Mesoscale eddies have attracted increased attention due to their central role in ocean energy and mass transport. The observations of their three-dimensional structure will facilitate the understanding of nonlinear eddy dynamics. In this paper, we propose a novel framework, the mesoscale eddy characterization from ordinal modalities recurrence networks method (MeC-OMRN), that utilizes a Petrel-II underwater glider for in situ observations and vertical structure characterization of a moving mesoscale eddy in the northern South China Sea. First, higher resolution continuous observation profile data collected throughout the traversal by the underwater glider are acquired and preprocessed. Subsequently, we analyze and compute these nonlinear data. To further amplify the hidden structural features of the mesoscale eddy, we construct ordinal modalities sequences rich in spatiotemporal characteristics based on the measured vertical density of the mesoscale eddy. Based on this, we employ ordinal modalities recurrence plots (OMRPs) to depict the vertical structure inside and outside the eddy, revealing significant differences in the OMRPs and the unevenness of density stratification within the eddy. To validate our intriguing findings from the perspective of complex network theory, we build the multivariate weighted ordinal modalities recurrence networks, through which network measures exhibit a more random distribution of vertical density stratification within the eddy, possibly due to more intense vertical convection and oscillations within the eddy's seawater micelles. These framework and intriguing findings are anticipated to be applied to more data-driven in situ observation tasks of oceanic phenomena.