Meiofaunal Organisms Research Articles

Benthic foraminifera biomass on the continental slope and São Paulo plateau of Santos Basin (SE Brazil): Comparison of different estimation methods

The biomass of benthic foraminifera stands out in marine environments compared to other meiofaunal organisms. Estimating the biomass of these organisms is a valuable biotic descriptor for understanding the carbon cycle and the flow of particulate organic matter. This study estimates the biomass of benthic foraminifera on the slope and plateau of the Santos Basin (SE Brazil) using the biovolume and cytoplasmic occupancy methodology. This work applies a non-destructive biovolume method of estimating biomass by the direct visualization of cytoplasmic occupancy (DV) compared with pre-established (in the literature) percentages of cytoplasmic occupation of the test volume: an average of 32 % (GE) and 35 % (AL). Although there was no statistically significant difference (p < 0.05) between DV and cytoplasmic percentages, it is recognized that the calculation of GE and AL can bias the results. We, therefore, emphasize the need to assess biomass according to species composition and ultrastructural variability. The species with the biggest individuals (>250 μm) contributed most to biomass in the Santos Basin and are considered k-strategists. In contrast, the species with smaller specimens (250–63 μm) are considered r-strategists, contributing more to the density in the study area. This study highlights the discrepancy between the abundant species biomass results by measuring all specimens and the extrapolation of the population for less sample effort, probably due to biological (e.g. intra/inter species variations) and environmental (e.g. availability of food and oxygen) factors. Based on the ecology of the species, the biomass estimates seem to reveal a relationship with the quantity and quality of organic matter, which will be investigated in the future. Future studies should consider the internal structures and address potential errors resulting from cytoplasm dehydration when staining and drying are performed.

Environmental drivers modelling the mangrove Kinorhyncha community along an urban-to-natural gradient in French Guiana (western Atlantic Ocean)

Meiofaunal communities are dominated by free-living nematodes and harpacticoid copepods. Most of the studies defining the environmental drivers that influence meiofauna focus on these profuse groups. The ‘rare’ meiofaunal organisms (densities &amp;lt;5%) are frequently overlooked, making it difficult to know which abiotic variables influence their populations, or their ecological role in the benthic ecosystems. In this study, we explore the ecological factors that characterize a low human-polluted mangrove in French Guiana (western Atlantic Ocean) along an urban-to-natural gradient, focusing on the ‘rare’ phylum Kinorhyncha. This taxon seems to be mainly influenced by sediment size, being more abundant in silty sediments. The presence of microorganisms also enhances the community, likely due to a higher food availability. Oppositely, some trace metals of both lithogenic and anthropogenic origin, as well as predominance of coarser sediment particles, seem to negatively affect their populations. The importance of including the lesser abundant groups of meiofauna in ecological studies is evident, since it allows to have a better idea of the ecological state of marine benthic environments.

Increasing temperature-driven changes in life history traits and gene expression of an Antarctic tardigrade species.

The Antarctic region has been experiencing some of the planet's strongest climatic changes, including an expected increase of the land temperature. The potential effects of this warming trend will lead ecosystems to a risk of losing biodiversity. Antarctic mosses and lichens host different microbial groups, micro-arthropods and meiofaunal organisms (e.g., tardigrades, rotifers). The eutardigrade Acutuncus antarcticus is considered a model animal to study the effect of increasing temperature due to global warming on Antarctic terrestrial communities. In this study, life history traits and fitness of this species are analyzed by rearing specimens at two different and increasing temperatures (5°C vs. 15°C). Moreover, the first transcriptome analysis on A. antarcticus is performed, exposing adult animals to a gradual increase of temperature (5°C, 10°C, 15°C, and 20°C) to find differentially expressed genes under short- (1day) and long-term (15days) heat stress. Acutuncus antarcticus specimens reared at 5°C live longer (maximum life span: 686days), reach sexual maturity later, lay more eggs (which hatch in longer time and in lower percentage) compared with animals reared at 15°C. The fitness decreases in animals belonging to the second generation at both rearing temperatures. The short-term heat exposure leads to significant changes at transcriptomic level, with 67 differentially expressed genes. Of these, 23 upregulated genes suggest alterations of mitochondrial activity and oxido-reductive processes, and two intrinsically disordered protein genes confirm their role to cope with heat stress. The long-term exposure induces alterations limited to 14 genes, and only one annotated gene is upregulated in response to both heat stresses. The decline in transcriptomic response after a long-term exposure indicates that the changes observed in the short-term are likely due to an acclimation response. Therefore, A. antarcticus could be able to cope with increasing temperature over time, including the future conditions imposed by global climate change.

The Ecological Quality Status Assessment of Marine and Transitional Ecosystems: New Methods and Perspectives for the Future

Worldwide legislation emphasizes the need to monitor the health of aquatic ecosystems based on the response of biological quality elements to environmental conditions. A plethora of methodologies have been suggested in this sense. Lately, substantial efforts have led to the exploration of new biological quality elements from the meiobenthic compartment and the implementation of new methodologies based on environmental DNA. Due to their short life-cycles, meiofaunal organisms respond quickly to environmental variability. Changes in population dynamics and species composition are indicative of changes in environmental conditions. Recent pioneer studies have shown that biotic indices based on benthic foraminifera and nematodes can efficiently assess the health of transitional and marine ecosystems. The use of environmental DNA, as well as other fingerprinting techniques, is increasing in biomonitoring studies, and further calibrations are still needed to implement this method. The published papers in this Special Issue represent well the wide applicability of meiobenthic groups, i.e., benthic foraminifera and nematodes, allowing us to address a key ecological knowledge gap in order to convince decision makers and stakeholders about the advantage of introducing new biological quality elements in environmental biomonitoring.

Looking for Nano- and Microplastics in Meiofauna Using Advanced Methodologies

Meiofauna (body size within 30–1000 µm) are the community of microscopic invertebrates that live at the bottom of marine and freshwater ecosystems and play a key role in the food webs of these environments. Several studies have addressed the adverse effects of anthropic stressors on meiofauna; however, data on the presence and impact of plastic debris in wild meiofaunal organisms are scant. Since the amount of microplastic waste in sediments may surge rapidly, ascertaining the ingestion of these xenobiotics by the abundant micrometazoan community is necessary to understand their potential accumulation in aquatic food webs and their hazard to the health of the ecosystem. The absence of documentation in this regard may be due to the difficulty in detecting the small size of the plastic fragments meiofauna may potentially ingest. To overcome this difficulty, we developed an integrated approach based on different microscopic/spectroscopic techniques suitable for detecting plastic particles of sizes down to 200 nm.

Domestic Sewage Outfall Severely Altered Environmental Conditions, Foraminiferal Communities, and Ecological Quality Statuses in Front of the Nearshore Beach of Cigarras (SE Brazil)

This study aims to analyses the response of meiofaunal organisms (foraminifera) to disturbances caused by the diffusers of domestic sewage outfall at Cigarras beach, SE Brazil. Hydrographical, sedimentological (grain size and geochemical), and living benthic foraminiferal recorded in 2006 and 2007 analyzed in ten stations were compared with the same results analyzed in two control/reference stations (sampled in 2008). The results of this work show that, in the benthic environment of the Cigarras region, moderated hydrodynamic conditions, relatively high total organic carbon, total nitrogen, total sulfur contents, oxic water column and anoxic sediments, organic matter supplied by marine productivity and from mixed sources prevail. Living foraminiferal assemblages denote that the Cigarras region is undergoing environmental degradation due to progressive organic enrichment directly influenced by the domestic sewage outfall. The effluents discharged by the domestic sewage constrained the composition of foraminiferal communities (which include mainly stress tolerant species) with probable impacts on the entire marine trophic chain. Noticeably, the tolerant species Ammonia tepida, Bolivina striatula and Buliminella elegantissima dominated at the stations under the influence of the sewage outfall. In addition, Ammonia parkinsoniana was found in moderate abundances, and the moderate level of TOC enrichment by the sewage outfall did not prevent the survival of this sensitive species. The ecological quality status inferred from the diversity index Exp(H’bc) calculated on foraminifera showed the poor ecological status of benthic habitats in the area. Overall, this work highlighted the adverse effects of the sewage outfall on the benthic ecosystem in front of the Cigarras beach in Brazil. Future works should investigate the current ecological quality of the area to figure out if any change occurred since the present study sampling.

Banco de dados georreferenciado e mapa interativo online de Tardigrada terrestres e aquáticos da América Central e América do Sul

Abstract Like other meiofaunal organisms, tardigrades suffer from a significant knowledge gap concerning many aspects of their biodiversity. The lack of an up-to-date digital collection with all species and details of limnoterrestrial and freshwater tardigrades in South and Central America is one of the most critical gaps to be filled. Therefore, the present work aims to develop a database containing all valid species of limnoterrestrial and freshwater tardigrades from South and Central America found until 2023 and provide open access to the results. Data for each species were obtained directly from the literature using Google Scholar and the website tardigrada.net. This compiled data resulted in the creation of a database with the species name, author and year of species description, genus, family, class, type country, type location, coordinates (longitude and latitude), if it is aquatic and/or limnoterrestrial, substrate where it was found, the country and location of collection, and manuscript containing the species identification. Furthermore, the coordinates of each occurrence were plotted on maps with political-administrative boundaries and Neotropical and Andean biogeographic regions. In addition, statistical analysis was performed related to the geographic distribution of the sampling effort. From the literature, 2157 records of valid non-marine Tardigrada species, endemic or not, were computed. From these records, 271 species of tardigrades have been identified in the two regions combined, with 223 species in South America and 129 species in Central America. We were able to show that there are still many biases in the sampling of tardigrades in the Neotropical and Andean regions and that further studies are needed on the biogeography of these meiofaunal organisms in these biogeographic regions. We expect this database to help better understand the richness and distribution patterns of limnoterrestrial and aquatic tardigrade species in Central and South America.

Distribution patterns of microplastics in subtidal sediments from the Sado river estuary and the Arrábida marine park, Portugal

Understanding local accumulation patterns of microplastics in subtidal sediments is crucial to assess how available such particles are for ingestion by benthic feeders and to identify the potential pollution sources in the region upon which is urgent to act. The coastal urban centers of Setúbal and Sesimbra (Portugal) and the multiple activities taking place at the contiguous Sado estuary and in the sheltered waters of Professor Luiz Saldanha Marine Park make this a relevant case study about MPs pollution in the seabed. Here, a short-term investigation assessed the spatiotemporal distribution, abundance, and composition of MPs on the nearshore seabed. Sediment samples were monthly collected from summer 2018 to winter 2019, in six stations. Despite the differences observed in rainfall between campaigns, no distinct patterns were detected in the accumulation of MPs throughout the sampled months. Yet, strong variations occurred among stations. The abundance of MPs in the Sado estuary (1042.8 ± 430.8 items kg−1) was higher in comparison to all the stations located along the marine park (52.9 ± 31.9 items kg−1). Fragments comprised 70% of particles found in estuarine sediments, while fibers were the predominant type in marine sediments. The majority of MPs collected in the estuary shared the same size class as the best represented grain size fraction: 0.250–0.500 mm. On average, the ratio between the abundance of MPs and the abundance of meiofauna organisms was higher in the estuary, suggesting more encounter rates, by both meiofauna and their predators, with MPs. The distribution of MPs throughout the study area was moderately correlated with sediment sorting and organic matter content. Also, the distinct mineralogical content of each station indicates a reduced sediment transit between stations and consequently a weak exportation of MPs from the estuary. The majority of the polymers identified by Fourier Transform Infrared Spectroscopy was denser than seawater. Polyethylene terephthalate represented 41% of the items analyzed and was mostly assigned to fibers and fiber bundles. Unveiling the distribution patterns of MPs along this segment of the Portuguese west coast enabled to identify a high-risk area where the implementation of preventive measures is urgent.

Long distance dispersal and pseudo-cryptic species in Gastrotricha: first description of a new species (Chaetonotida, Chaetonotidae, Polymerurus) from an oceanic island with volcanic rocks

The majority of meiofaunal organisms have limited abilities to disperse over long distances, yet they may still have disjointed distributions. Many studies have found evidence of long distance meiofauna dispersal due to passive transport by wind and/or animals that serve as vectors for these widespread distributions. Our research on an archipelago in northeast Brazil uncovered a species of freshwater gastrotrich that at first sight appeared to be a ‘cosmopolitanʼ species that had surpassed the connectivity constraint to occupy an island more than 350 km from the mainland. However, through an integrative approach using molecular sequences and morphology, we have uncovered evidence of a pseudo-cryptic species in this freshwater gastrotrich. Polymerurus insularis sp. nov. closely resembles its congeners and can easily be mistaken for similar species such as P. nodicaudus, a cosmopolitan gastrotrich. Unique to P. insularis sp. nov. are (1) a cuticular armature composed of simple spined scales with polygonal shape (Type 1 scales), (2) a single, spineless dorsal scale with a triangular shape located terminally next to the furca base (Type 2 scale), (3) a spineless zone composed by a patch lacking cuticular ornamentation and flat, rounded or polygonal scales without spines (Type 4 scales) (4) particular sets of terminal spined or keeled scales located both dorsally and ventrally around the furca base (Types 3, 5, 6, 7 and 8 scales). The presence of this species on a volcanic island is discussed, as is the relationship between pseudocryptism and dispersal in gastrotrichs and other meiofauna.

Fast autooxidation of a bis-histidyl-ligated globin from the anhydrobiotic tardigrade, Ramazzottius varieornatus, by molecular oxygen.

Tardigrades, a phylum of meiofaunal organisms, exhibit extraordinary tolerance to various environmental conditions, including extreme temperatures (-273 to 151°C) and exposure to ionizing radiation. Proteins from anhydrobiotic tardigrades with homology to known proteins from other organisms are new potential targets for structural genomics. Recently, we reported spectroscopic and structural characterization of a hexacoordinated haemoglobin (Kumaglobin [Kgb]) found in an anhydrobiotic tardigrade. In the absence of its exogenous ligand, Kgb displays hexacoordination with distal and proximal histidines. In this work, we analysed binding of the molecular oxygen ligand following reduction of haem in Kgb using a pulse radiolysis technique. Radiolytically generated hydrated electrons (eaq-) reduced the haem iron of Kgb within 20 µs. Subsequently, ferrous haem reacted with O2 to form a ferrous-dioxygen intermediate with a second-order rate constant of 3.0 × 106 M-1 s-1. The intermediate was rapidly (within 0.1 s) autooxidized to the ferric form. Redox potential measurements revealed an E'0 of -400 mV (vs. standard hydrogen electrode) in the ferric/ferrous couple. Our results suggest that Kgb may serve as a physiological generator of O2▪- via redox signalling and/or electron transfer.

Substrate temperature as a primary control on meiofaunal populations in the intertidal zone: A dead zone attributed to elevated summer temperatures in eastern Bahrain

Summer temperatures in excess of 52°C, have been measured at the high tide mark in surficial substrates in the exposed areas of an intertidal mudflat in Bahrain. The incoming flood tide may have a temperature as high as 42°C. As a result, large swaths of the upper intertidal zone are barren of living meiofauna (e.g., foraminifera, ostracods, gastropods, and worms) during the hottest months of the year. Samples collected from the intertidal zone in August present only dead assemblages of foraminifera, ostracods, and gastropod shells. Dead assemblages of the foraminifer Peneroplis collected from the upper reaches of the intertidal zone consist largely of juvenile specimens, implying that the living populations, when present, do not reach maturity. The full range of living meiofaunal organisms is only observed in tidal channels that remain submerged during low tide. The presence of a summer dead zone for intertidal meiofaunal organisms is consistent with predictions of climate models that suggest portions of the Arabian Gulf may become too extreme to support eukaryotic life.

Nematode responses to an Arctic sea-ice regime: morphometric characteristics and biomass size spectra

Body size is one of the most important traits of organisms that affects their behavioral life histories, physiologies, and energy requirements. For sediment-dwelling organisms, such as free-living nematodes, body size is a direct adaptation for living in sediments with a particular particle size, but other environmental factors, e.g., water depth and food availability, directly or indirectly shape nematode morphology. Nevertheless, our knowledge of meiofaunal organisms sizes still lags far behind that of other aquatic fauna, particularly for high-latitude fauna. Therefore, to gain insight into the nematode community size structure, we investigated eight stations located in the seasonal sea-ice zone north of Svalbard (Yermak Plateau, Nansen Basin, and Northern Svalbard shelf) during Arctic spring. Sample locations covered a wide depth gradient, different sea-ice concentrations and subsequent bloom stages. Our study provides previously unavailable data on nematode morphometry for this Arctic region during ecologically important spring to summer transition times. We analyzed nematode biomass, body shape and morphometric attributes, along with respective feeding types and life stage information. Our results show that differences in nematode densities, biomass and allometric attributes most likely reflect differences in the flux of organic material to the seafloor and in the biogeochemical properties of the sediments. Nematode assemblages appeared to respond to spatial gradients in ice cover duration and therefore pelagic productivity from the northern Svalbard shelf to the Yermak Plateau as evidenced by decreasing density, biomass and body size. Considering the entire community, as well as different life stages, average individual body weight decreased northward. Biomass dominance in the lower weight classes and the significantly lower abundance of long and thick morphotype nematodes observed on the Yermak Plateau than in the two other regions were striking. This was in contrast with the assemblage observed on the shelf, where prevailing environmental conditions influenced the presence of other morphotypes - markedly longer and wider organisms. Ongoing changes in sea-ice cover and primary production in the Arctic may significantly affect nematode functioning, as they are expected to have pronounced impacts on nematode morphological characteristics. In this regard, the size-based approach becomes a useful tool for detecting changes in the community and has important implications for predicting the direction of change with regard to benthic productivity.

Should we redefine meiofaunal organisms? The impact of mesh size on collection of meiofauna with special regard to nematodes

Meiofaunal organisms are the predominant metazoans in benthic systems and important members of the benthic food web. They are defined by mesh size and specifically by their retention on a sieve with a 44-µm mesh size. In this study, we examined the accuracy of this standard collection method by counting the number of meiobenthic individuals, life stages and nematode species in a sample. A filter cascade consisting of five different mesh sizes (41 µm, 30 µm, 20 µm, 10 µm and 1 µm) was used to fractionate a natural freshwater meiobenthic collection, and the individuals in each fraction were then counted. In line with the current definition of meiofauna, all tardigrades, microcrustaceans, chironomids and oligochaetes were retained by the largest mesh size, whereas 9% of the rotifers were first retained on the 30-µm meshes. For nematodes, 23% were not retained on the 41-µm meshes and individuals were collected even from the 1-µm fraction. With declining mesh size, the yield of retained nematodes increased, the age structure shifted to juveniles, evenness declined, and the species composition changed. As all of these findings were significant, this study therefore shows that the current definition of meiofauna is not sufficient to encompass the entire spectrum of meiofauna present in a sample and may result in misleading assessments of the diversity and composition of these organisms. We therefore propose that, especially for nematodes, a definition based on a smaller mesh size (at least 20 µm) is more appropriate.

Meiofauna in stream habitats: temporal dynamics of abundance, biomass and secondary production in different substrate microhabitats in a first-order stream

Meiofaunal abundance, biomass and secondary production were investigated over 13 months in an unpolluted first-order stream. Four microhabitats were considered: sediment and the biofilms on dead wood, macrophytes and leaf litter. The relative contribution of the microhabitats to secondary production and the influence of environmental factors on meiofaunal density distribution were estimated. We expected (1) meiofaunal abundance and biomass to exhibit seasonal patterns, with more pronounced seasonal fluctuations on macrophytes and leaf litter than in the other microhabitats, (2) annual secondary production to be highest in sediment; however, the relative contribution of the microhabitats to monthly secondary production would change during the year, and (3) a bottom-up driven influence on meiofaunal density distribution in the microhabitats. Meiofaunal annual mean abundance, biomass and secondary production were 7–14 times higher in sediment and on dead wood than on macrophytes and leaf litter. Significant seasonal patterns described the meiofaunal abundance in sediment and on leaf litter as well as the biomass in sediment, on macrophytes and leaf litter. Organisms in sediment and on dead wood contributed 48 and 43%, respectively, to secondary production m−2, but in regard to the stream area covered by the microhabitats, sediment had the highest share (80%). Significant determinants of the density distribution were AFDM, protozoans, bacteria and Chl-a, which influenced all meiofaunal groups. Our study clearly indicates that meiofaunal organisms in sediment and on dead wood have a remarkable share on total secondary production of lotic systems which is especially relevant for forested low-order streams.

Echinoderes unispinosus (Kinorhyncha: Cyclorhagida), a new record fromdeep-sea sediments in the Gulf of Mexico.

Kinorhyncha is a phylum of exclusively marine, meiofaunal invertebrates (Sørensen Pardos 2008). Currently, the knowledge about the worldwide distribution of most of its species is considerably patchy, as several taxa have been reported from a single or few localities, usually within a limited geographic area (Sørensen Pardos 2008; Yamasaki et al. 2018a). This even becomes more evident for deep-sea kinorhynchs, as noticed by Sørensen et al. (2018). Given the particular value of new records from the deep-sea to increase our understanding in the distribution of meiofaunal organisms plus the observed relationship of morphological variation through the bathymetric gradient, we aim to report the first record of Echinoderes unispinosus Yamasaki, Neuhaus George, 2018 in the southern edge of the Gulf of Mexico (GoM), and contribute with new information about the morphological intraspecific variation of this species. In Mexico, studies of kinorhynch biodiversity are limited to the northern Gulf of California (50-1570m depth) (Álvarez-Castillo et al. 2015, 2018; Cepeda et al. 2019) and the Yucatán Peninsula (Sánchez Martínez 2019). The GoM is a semi-closed basin located in a transition zone with both subtropical and tropical weather. Deep-sea muddy sediment samples of the present study were collected during the expedition XIXIMI-5 (10-24 June 2016) and processed according to Cisterna-Céliz et al. (2019). Kinorhynch specimens were mounted, measured and photographed according to Cepeda et al. (2019). Two adult males were identified as E. unispinosus, one from station B11 (2298 m depth) and another from station B15 (3708m depth). Kinorhynch specimens were deposited at the Aquatic Invertebrates Collection of the Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM), Mexico, under accession numbers: KGM.001 and KGM.002.

Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability

Meiofauna organisms play an important role in ecological and sedimentary processes in estuarine ecosystems. Recently, the application of environmental DNA (eDNA) for investigating meiofauna in different environments, improved the accessibility to its diversity and composition in a scale, frequency and depth previously unattainable. Nevertheless, little attention has been given to the description of baseline patterns of coupled spatial and temporal dynamics of meiobenthic communities. In an earlier study conducted in Lima estuary (NW Portugal), using eDNA metabarcoding of sediment samples, high levels of meiofauna Operational Taxonomic Units (OTUs) turnover were recorded, between sampling points only a few metres apart, and among sampling stations along the estuary. In order to verify the consistency of these patterns, in the current study we re-assessed Lima estuary’s meiofauna communities approximately 1 year after, applying the same methodological approach (targeting segments of the COI and 18S rRNA genes), and expanding HTS-data analyses through the use of association networks. A high degree of spatial turnover was found both within and between sampling stations and this was consistent for both markers and years. As a consequence, most of the beta-diversity was accounted by OTU replacement with only a minor contribution from OTU richness. Despite the high levels of OTU replacement, relatively stable network properties were found in meiofaunal communities, irrespective of the sampled year. Network properties appear to shift sharply from the downstream/high salinity area of the estuary to the mesohaline medium-upstream areas, suggesting high resilience and redundancy of meiofaunal communities along the estuarine gradient. The recognition of meiofauna’s networks features may improve the understanding of the ecology and dynamics of these communities that apparently hold large portions of variable elements, thereby making difficult their analyses solely based on the OTU/species composition.

Meiofaunal communities and nematode diversity characterizing the Secca delle Fumose shallow vent area (Gulf of Naples, Italy).

Hydrothermal venting is rather prevalent in many marine areas around the world, and marine shallow vents are relatively abundant in the Mediterranean Sea, especially around Italy. However, investigations focusing on the characterization of meiofaunal organisms inhabiting shallow vent sediments are still scant compared to that on macrofauna. In the present study, we investigated the meiobenthic assemblages and nematode diversity inhabiting the Secca delle Fumose (SdF), a shallow water vent area located in the Gulf of Naples (Italy). In this area, characterized by a rapid change in the environmental conditions on a relative small spatial scale (i.e., 100 m), we selected four sampling sites: one diffusive emission site (H); one geyser site (G) and two inactive sites (CN, CS). Total meiofauna abundance did not vary significantly between active and inactive sites and between surface and deeper sediment layers due to a high inter-replicate variability, suggesting a pronounced spatial-scale patchiness in distribution of meiofauna. Nematofauna at site H presented the typical features of deep-sea vents with low structural and functional diversity, high biomass and dominance of few genera (i.e., Oncholaimus; Daptonema) while from site G we reported diversity values comparable to that of the inactive sites. We hypothesized that site G presented a condition of “intermediate disturbance” that could maintain a high nematode diversity. Environmental features such as sediment temperature, pH, total organic carbon and interstitial waters ions were found to be key factors influencing patterns of meiofauna and nematofauna assemblages at SdF. Even though the general theory is that nematodes inhabiting shallow vent areas include a subset of species that live in background sediments, this was not the case for SdF vent area. Due to a marked change in nematode composition between all sites and to the presence of many exclusive species, every single investigated site was characterized by a distinct nematofauna reflecting the high spatial heterogeneity of SdF.

Meiofauna Life on Loggerhead Sea Turtles-Diversely Structured Abundance and Biodiversity Hotspots That Challenge the Meiofauna Paradox

Sea turtles migrate thousands of miles annually between foraging and breeding areas, carrying dozens of epibiont species with them on their journeys. Most sea turtle epibiont studies have focused on large-sized organisms, those visible to the naked eye. Here, we report previously undocumented levels of epibiont abundance and biodiversity for loggerhead sea turtles (Caretta caretta), by focusing on the microscopic meiofauna. During the peak of the 2018 loggerhead nesting season at St. George Island, Florida, USA, we sampled all epibionts from 24 carapaces. From the subsamples, we identified 38,874 meiofauna individuals belonging to 20 higher taxa. This means 810,753 individuals were recovered in our survey, with an average of 33,781 individuals per carapace. Of 6992 identified nematodes, 111 different genera were observed. To our knowledge, such levels of sea turtle epibiont abundance and diversity have never been recorded. Loggerhead carapaces are without doubt hotspots of meiofaunal and nematode diversity, especially compared to other non-sedimentary substrates. The posterior carapace sections harbored higher diversity and evenness compared to the anterior and middle sections, suggesting increased colonization and potentially facilitation favoring posterior carapace epibiosis, or increased disturbance on the anterior and middle carapace sections. Our findings also shed new light on the meiofauna paradox: “How do small, benthic meiofauna organisms become cosmopolitan over large geographic ranges?” Considering high loggerhead epibiont colonization, the large distances loggerheads migrate for reproduction and feeding, and the evolutionary age and sheer numbers of sea turtles worldwide, potentially large-scale exchange and dispersal for meiofauna through phoresis is implied. We distinguished different groups of loggerhead carapaces based on divergent epibiont communities, suggesting distinct epibiont colonization processes. These epibiont observations hold potential for investigating loggerhead movements and, hence, their conservation.

DNA Barcoding for Delimitation of Putative Mexican Marine Nematodes Species

Nematode biodiversity is mostly unknown; while about 20,000 nematode species have been described, estimates for species diversity range from 0.1 to 100 million. The study of nematode diversity, like that of meiofaunal organisms in general, has been mostly based on morphology-based taxonomy, a time-consuming and costly task that requires well-trained specialists. This work represents the first study on the taxonomy of Mexican nematodes that integrates morphological and molecular data. We added eleven new records to the Mexican Caribbean nematode species list: Anticomidae sp.1, Catanema sp.1, Enoploides gryphus, Eurystomina sp.1, Haliplectus bickneri, Metachromadora sp.1, Odontophora bermudensis, Oncholaimus sp.1, Onyx litorale, Proplatycoma fleurdelis, and Pontonema cf. simile. We improved the COI database with 57 new sequences from 20 morphotypes. All COI sequences obtained in this work are new entries for the international genetic databases GenBank and BOLD. Among the studied sites, we report the most extensive species record (12 species) at Cozumel. DNA barcoding and species delineation methods supported the occurrence of 20 evolutionary independent entities and confirmed the high taxonomic resolution of the COI gene. Different approaches provided consistent results: ABGD and mPTP methods disentangled 20 entities, whereas Barcode Index Numbers (BINs) recovered 22 genetic species. Results support DNA barcoding being an efficient, fast, and low-cost method to integrate into morphological observations in order to address taxonomical shortfalls in meiofaunal organisms.

Small-scale spatial variation of meiofaunal communities in Lima estuary (NW Portugal) assessed through metabarcoding

Meiofaunal organisms play a key role in estuarine ecosystems, being responsible for significant ecological processes. However, meiofauna constitutes a particularly difficult community to be monitored through conventional morphology-based approaches. New emerging tools, such as DNA metabarcoding, facilitate the access to these communities and provide an opportunity to develop routine monitoring programs. In the present study, the small-scale spatial variation of meiofaunal communities in the Lima estuary (NW Portugal) was investigated using DNA metabarcoding. The first stage of the study aimed to establish the amount of sediment sample to be used for DNA extraction and to test six primer pairs, three of them amplifying fragments from the mitochondrial cytochrome c oxidase gene (COI) and three other the nuclear ribosomal 18S rRNA gene (18S). In a subsequent stage, sediment samples were collected in four stations along an estuarine gradient (salinity ranging between 9 and 28), in which six sampling points about 4–5 m apart were considered: three in the high intertidal and three in the mid intertidal. After the DNA extraction from sediments, COI and 18S amplicon libraries were produced and sequenced in an Illumina MiSeq platform. OTUs (operational taxonomic units) recovered by either COI or 18S displayed generally high turnover in occurrence among sampling points within a station and tidal horizon, among tidal horizons within a station, and among stations of distinct salinity (approx. 60–93%). Both markers recorded little variation among stations in OTU richness and in the taxonomic composition of the most dominant groups. However, the meiofauna detected differed qualitatively between the two markers used; Amoebozoa and Cnidaria were mostly detected with COI while Ciliophora and Platyhelminthes with 18S. In addition, the structure of the meiofauna community diverged significantly among stations and was strongly influenced by salinity and sediment features. Globally, results indicated a highly patchy distribution of meiofauna taxa in the Lima estuary, revealed by the high OTU turnover even between sampling points only a few meters apart. Hence, eDNA-based meiofauna surveys require consideration of the necessary sampling effort on relatively small spatial scales, as well as an appreciation of the tidal level-induced variation of these communities.