Cold Stress Tolerance Mechanisms Research Articles

The Molecular Mechanism of Cold-Stress Tolerance: Cold Responsive Genes and Their Mechanisms in Rice (Oryza sativa L.).

Rice (Oryza sativa L.) production is highly susceptible to temperature fluctuations, which can significantly reduce plant growth and development at different developmental stages, resulting in a dramatic loss of grain yield. Over the past century, substantial efforts have been undertaken to investigate the physiological, biochemical, and molecular mechanisms of cold stress tolerance in rice. This review aims to provide a comprehensive overview of the recent developments and trends in this field. We summarized the previous advancements and methodologies used for identifying cold-responsive genes and the molecular mechanisms of cold tolerance in rice. Integration of new technologies has significantly improved studies in this era, facilitating the identification of essential genes, QTLs, and molecular modules in rice. These findings have accelerated the molecular breeding of cold-resistant rice varieties. In addition, functional genomics, including the investigation of natural variations in alleles and artificially developed mutants, is emerging as an exciting new approach to investigating cold tolerance. Looking ahead, it is imperative for scientists to evaluate the collective impacts of these novel genes to develop rice cultivars resilient to global climate change.

ITRAQ-based proteomic analysis reveals proteins associated with cold stress response in two different populations of Manila clam (Ruditapes philippinarum).

Water temperature is one of the key environmental factors for marine ectotherms and a change in temperature beyond and organism's capacity limits can cause a series of changes to physiological state and damage to the organism. Understanding how organisms adapt to complex environments is a central goal of evolutionary biology and ecology. Ruditapes philippinarum is an ecologically and scientifically important marine bivalve species. To uncover the molecular mechanisms of acclimation of R. philippinarum to low-temperature stress, iTRAQ-based quantitative proteomics was conducted to compare the proteomes of the north and south populations of R. philippinarum under low-temperature stress. The results showed a total of 6355 and 6352 proteins were identified in two populations, respectively. Among these, 94 and 83 were differentially abundant proteins (DAPs), and most of DAPs were related to oxidation-process, protein binding, or an integral component of membrane. According to the results of KEGG pathway enrichment analysis, most of DAPs in both populations are involved in immune-related pathways, while other population-specific significant abundance proteins of south population and north population were enriched in biosynthesis of amino acids (Enolase, Glutamine synthetase) and unsaturated fatty acids pathways (3-ketoacyl-CoA thiolase, Stearoyl-CoA desaturase), respectively, indicating that two population of clams may have different cold-stress regulation mechanisms. Our study provides new insights into different cold stress tolerance mechanisms in northern and southern populations of R. philippinarum using iTRAQ-based proteomics. This work contributes to a better understanding of molecular basis on cold stress response and adaptations, which shed lights on evolutionary biology and general ecophysiology of R. philippinarum.

Joint transcriptomic and metabolomic analysis reveals the mechanism of low-temperature tolerance in Hosta ventricosa.

Hosta ventricosa is a robust ornamental perennial plant that can tolerate low temperatures, and which is widely used in urban landscaping design in Northeast China. However, the mechanism of cold-stress tolerance in this species is unclear. A combination of transcriptomic and metabolomic analysis was used to explore the mechanism of low-temperature tolerance in H. ventricosa. A total of 12 059 differentially expressed genes and 131 differentially expressed metabolites were obtained, which were mainly concentrated in the signal transduction and phenylpropanoid metabolic pathways. In the process of low-temperature signal transduction, possibly by transmitting Ca2+ inside and outside the cell through the ion channels on the three cell membranes of COLD, CNGCs and CRLK, H. ventricosa senses temperature changes and stimulates SCRM to combine with DREB through the MAPK signal pathway and Ca2+ signal sensors such as CBL, thus strengthening its low-temperature resistance. The pathways of phenylpropanoid and flavonoid metabolism represent the main mechanism of low-temperature tolerance in this species. The plant protects itself from low-temperature damage by increasing its content of genistein, scopolentin and scopolin. It is speculated that H. ventricosa can also adjust the content ratio of sinapyl alcohol and coniferyl alcohol and thereby alter the morphological structure of its cell walls and so increase its resistance to low temperatures.When subjected to low-temperature stress, H. ventricosa perceives temperature changes via COLD, CNGCs and CRLK, and protection from low-temperature damage is achieved by an increase in the levels of genistein, scopolentin and scopolin through the pathways of phenylpropanoid biosynthesis and flavonoid biosynthesis.

Hormonal interplay in the regulation of fruit ripening and cold acclimation in avocados

Avocados (Persea americana Mill.) are climacteric fruits, the ripening of which during postharvest at room temperature is strongly ethylene dependent. However, the role of other phytohormones in the modulation of postharvest ripening of avocados is still poorly understood. The optimal ripening state of avocados is attained a few days after harvest depending on the genotype, growing region and initial maturity stage of the fruit, and cold temperature storage is commonly used to delay this process. Here, we hypothesized that the ripening of avocados at room temperature may be governed not only by ethylene, but also by other phytohormones. With this aim, we analyzed the hormonal profiling of avocados subjected to either 4 °C and 25 °C during 10 days of postharvest. A biphasic response was observed during postharvest ripening of avocados at room temperature. While ethylene alone appeared to govern fruit ripening during the first transfer from cold to room temperature, a complex hormonal interplay occurred during ripening of avocados leading to a progressive fruit softening at room temperatures. Aside from ethylene, auxin, gibberellins, jasmonates and ABA appeared to be involved in avocado fruit ripening during postharvest at room temperature. Cold storage for a period of 10 days inhibited this hormonal response related to ripening. Furthermore, avocados stored at cold temperatures underwent a quick response in order to tolerate cold stress leading to changes in endogenous ABA and jasmonates. We conclude that a complex hormonal interplay, rather than ethylene alone, modulates postharvest ripening of avocados and that cold storage can effectively be employed as a technique to prevent avocados from a rapid ripening thanks to the cold stress tolerance mechanisms deployed by fruits through multiple hormonal regulation.

Integrated RNA-Seq Analysis and Meta-QTLs Mapping Provide Insights into Cold Stress Response in Rice Seedling Roots.

Rice (Oryza sativa L.) is a widely cultivated food crop around the world, especially in Asia. However, rice seedlings often suffer from cold stress, which affects their growth and yield. Here, RNA-seq analysis and Meta-QTLs mapping were performed to understand the molecular mechanisms underlying cold tolerance in the roots of 14-day-old seedlings of rice (RPY geng, cold-tolerant genotype). A total of 4779 of the differentially expressed genes (DEGs) were identified, including 2457 up-regulated and 2322 down-regulated DEGs. The GO, COG, KEEG, and Mapman enrichment results of DEGs revealed that DEGs are mainly involved in carbohydrate transport and metabolism, signal transduction mechanisms (plant hormone signal transduction), biosynthesis, transport and catabolism of secondary metabolites (phenylpropanoid biosynthesis), defense mechanisms, and large enzyme families mechanisms. Notably, the AP2/ERF-ERF, NAC, WRKY, MYB, C2H2, and bHLH transcription factors participated in rice’s cold–stress response and tolerance. On the other hand, we mapped the identified DEGs to 44 published cold–stress-related genes and 41 cold-tolerant Meta-QTLs regions. Of them, 12 DEGs were the published cold–stress-related genes and 418 DEGs fell into the cold-tolerant Meta-QTLs regions. In this study, the identified DEGs and the putative molecular regulatory network can provide insights for understanding the mechanism of cold stress tolerance in rice. In addition, DEGs in KEGG term-enriched terms or cold-tolerant Meta-QTLs will help to secure key candidate genes for further functional studies on the molecular mechanism of cold stress response in rice.

Overexpression of Arabidopsis thaliana malonyl-CoA synthetase gene enhances cold stress tolerance by activating mitogen-activated protein kinases in plant cells

Malonyl-CoA synthetases may modulate cell responses to abiotic stress by regulating stress-related signaling transduction pathways or activating expression of transcription factors. However, the molecular mechanism of cold stress tolerance enhanced by malonyl-CoA synthetase is not fully understood. Here, we report that overexpression of the Arabidopsis thaliana malonyl-CoA synthetase gene AAE13.1 resulted in increased cell viability and growth rate and decreased thiobarbituric acid reactive substances under cold stress in rice (Oryza sativa L.), tobacco (Nicotiana tabacum), and slash pine (Pinus elliottii Engelm.). AAE13.1 was associated with cold stress tolerance by increasing the activity of ascorbate peroxidase, catalase, polyphenol oxidase, and peroxidase and the accumulation of acid phosphatase and alkaline phosphatase. Among six rice mitogen-activated protein kinase (MAPK) genes examined, AAE13.1 overexpression increased the expression of OsMAPK genes during cold stress. AAE13.1 activated expression of stress-response genes OsMAPK1, OsMAPK2, and OsMAPK3, indicating that AAE13.1 enhances cold stress tolerance by regulating expression of MAPK genes in plant cells. These results increase our understanding of cold stress tolerance in species of monocotyledons, dicotyledons, and gymnosperms.

Early Cold-Induced Peroxidases and Aquaporins Are Associated With High Cold Tolerance in Dajiao (Musa spp. 'Dajiao').

Banana is an important tropical fruit with high economic value. One of the main cultivars (‘Cavendish’) is susceptible to low temperatures, while another closely related specie (‘Dajiao’) has considerably higher cold tolerance. We previously reported that some membrane proteins appear to be involved in the cold tolerance of Dajiao bananas via an antioxidation mechanism. To investigate the early cold stress response of Dajiao, here we applied comparative membrane proteomics analysis for both cold-sensitive Cavendish and cold-tolerant Dajiao bananas subjected to cold stress at 10°C for 0, 3, and 6 h. A total of 2,333 and 1,834 proteins were identified in Cavendish and Dajiao, respectively. Subsequent bioinformatics analyses showed that 692 Cavendish proteins and 524 Dajiao proteins were predicted to be membrane proteins, of which 82 and 137 differentially abundant membrane proteins (DAMPs) were found in Cavendish and Dajiao, respectively. Interestingly, the number of DAMPs with increased abundance following 3 h of cold treatment in Dajiao (80) was seven times more than that in Cavendish (11). Gene ontology molecular function analysis of DAMPs for Cavendish and Dajiao indicated that they belong to eight categories including hydrolase activity, binding, transporter activity, antioxidant activity, etc., but the number in Dajiao is twice that in Cavendish. Strikingly, we found peroxidases (PODs) and aquaporins among the protein groups whose abundance was significantly increased after 3 h of cold treatment in Dajiao. Some of the PODs and aquaporins were verified by reverse-transcription PCR, multiple reaction monitoring, and green fluorescent protein-based subcellular localization analysis, demonstrating that the global membrane proteomics data are reliable. By combining the physiological and biochemical data, we found that membrane-bound Peroxidase 52 and Peroxidase P7, and aquaporins (MaPIP1;1, MaPIP1;2, MaPIP2;4, MaPIP2;6, MaTIP1;3) are mainly involved in decreased lipid peroxidation and maintaining leaf cell water potential, which appear to be the key cellular adaptations contributing to the cold tolerance of Dajiao. This membrane proteomics study provides new insights into cold stress tolerance mechanisms of banana, toward potential applications for ultimate genetic improvement of cold tolerance in banana.

Cold stress tolerance mechanisms in plants. A review

The human population is increasing at an alarming rate, whereas at the same time agricultural productivity is decreasing due to the effect of various environmental problems. In particular, cold stress is a serious threat to the sustainability of crop yields. Indeed, cold stress can lead to major crop losses. Various phenotypic symptoms in response to cold stress include poor germination, stunted seedlings, yellowing of leaves (chlorosis), reduced leaf expansion and wilting, and may lead to death of tissue (necrosis). Cold stress also severely hampers the reproductive development of plants. The major negative effect of cold stress is that it induces severe membrane damage. This damage is largely due to the acute dehydration associated with freezing during cold stress. Cold stress is perceived by the receptor at the cell membrane. Then a signal is transduced to switch on the cold-responsive genes and transcription factors for mediating stress tolerance. Understanding the mechanism of cold stress tolerance and genes involved in the cold stress signaling network is important for crop improvement. Here, I review cold stress tolerance mechanisms in plants. The major points discussed are the following: (1) physiological effects of cold stress, (2) sensing of cold temperatures and signal transduction, and (3) the role of various cold-responsive genes and transcription factors in the mechanism of cold stress tolerance.

Cold Acclimation Responses of Three Cool-season Turfgrasses and the Role of Proline-associated Pentose Phosphate Pathway

The role of the antioxidant response system in association with the proline-associated pentose phosphate pathway for cold adaptation was investigated in three cool-season turfgrasses during a cold acclimation period. As phenolic biosynthesis and antioxidant stimulation is proposed to be linked to the proline-associated pentose phosphate pathway, this study was aimed to determine the active role of proline in metabolic regulation and its relationship with the cold stress tolerance mechanism of cool-season turfgrasses. In this study, significant accumulation of total soluble phenolics and higher total antioxidant activity was observed in creeping bentgrass (Agrostis stolonifera L.), kentucky bluegrass (Poa pratensis L.), and perennial ryegrass (Lolium perenne L.) during cold acclimation, confirming the direct and indirect role of phenolics to counter low temperature-induced oxidative stress. A positive correlation between high phenolic content and the proline-associated pentose phosphate pathway was also found in investigated turfgrass species during a cold acclimation period. Low succinate dehydrogenase activity along with the high glucose-6-phosphate dehydrogenase activity in cold-acclimated turfgrass species suggested a probable shift of carbon flux from the energy-consuming tricarboxylic cycle to the alternative energy-efficient proline-associated pentose phosphate pathway to induce a better cold stress tolerance mechanism in these cool-season turfgrasses. Higher proline accumulation in cold-acclimated turfgrass species also supported the above findings and a probable proline oxidation to support mitochondrial oxidative phosphorylation was observed in acclimated kentucky bluegrass based on the activity of proline dehydrogenase, which likely supports the active metabolic role of proline in stress-induced situations. Through this study, a significant variation in cold stress tolerance mechanisms was observed among three investigated cool-season turfgrass species during cold acclimation. Furthermore, a high cold stress tolerance characteristic was observed in kentucky bluegrass by adapting a more efficient pathway for an antioxidant response linked to proline accumulation.

Thermonastic leaf movements: a synthesis of research with Rhododendron

Thermonastic leaf movements in Rhododendron L. occur in response to freezing temperatures. These movements are composed of leaf curling and leaf angle changes that are distinct leaf movements with different responses to climatic factors. Leaf angle is controlled by the hydration of the petiole, as affected by soil water content, atmospheric vapour pressure, and air temperature. In contrast, leaf curling is a specific response to leaf temperature, and bulk leaf hydration has little effect. The physiological cause of leaf curling is not well understood, but the mechanism must lie in the physiology of the cell wall and/or regional changes in tissue hydration. Available evidence suggests that intercellular freezing is not a cause of leaf curling. Manipulation experiments demonstrate that changes in leaf orientation in Rhododendron most likely serve to protect the leaves from membrane damage due to high irradiance and cold temperatures. In particular, the pendent leaves protect the chloroplast from photoinhibition. Leaf curling may serve to slow the rate of thaw following freezing, a common phenomenon in the Appalachian mountains of the U.S. The thermonastic leaf movements have a greater importance to plants in a dim environment because the potential impact to canopy carbon gain is greater than in high light environments. These leaf movements have several implications for horticultural management. There seems to be a trade-off between water stress tolerance and freezing stress tolerance by leaf movements. Thermonastic leaf movements may be a major mechanism of cold stress tolerance in Rhododendron species. The actual physiological cause of leaf movement has not been elucidated and many more species need to be evaluated to verify the general importance of leaf movements to Rhododendron ecology and evolution.