Detailed measurements of photon flux density (PFD) on the paddy field water surface were conducted under sunny sky conditions using a photosensor array of 100 small photodiodes under rice canopies at the heading and ripening stages. PFD on paddy water surface was not uniform and spatially variable even within a short distance of a few centimeters, showing that the irregular penetration of direct sunlight significantly affects the light environment under the canopies. Although occasional high peaks of PFD were observed, most of the water surface was exposed to a PFD of less than 200 µmol m−2 s−1, even around midday. Mean PFD were high at midday and low in early morning or late evening. Mean ratios of the PFD under the canopy to that outside the canopy (RPFD) were also high at midday and low in early morning or late evening, which can be explained by Poisson's model of light penetration. Maximum mean PFD and mean RPFD were often observed not around noon, but when the azimuth angle of the sun coincided with the row direction. Moreover, under rice canopies at the heading stage, rapid increases and decreases of mean RPFD were observed immediately before and after the peak time. These results indicate that significant high photosynthetic carbon fixation by the paddy field weeds can take place only during the few hours when the azimuth angle of the sun coincides with the row direction.