AbstractCurrently barrens communities only represent about 1% of their original area in the Great Lakes region. To maintain or restore barrens vegetation, prescribed fire is often applied to limit the regeneration of undesirable species and shrubs. Vegetation community response is a combination of direct fire effects on the vegetation vitality and the indirect effect of soil nitrogen (N) loss that favors nutrient‐poor adapted barren communities. In this study, we assessed forest floor and upper mineral soil (0–5 cm) pools of carbon (C), N, and mercury (Hg) before and after prescribed fire of the Moquah Barrens in northwest Wisconsin. Although we took measurements in four distinct cover types, we found no relationship between cover type and soil pools. Across all cover types, prescribed fire led to considerable emissions of C, N, and Hg in the forest floor but only Hg in the upper mineral soils (0–5 cm), presumably because maximum fire temperatures were met for Hg volatilization. We classified fire severity and soil surface temperatures at the quadrat scale, but no discernable relationships with emissions were observed. The lack of detectable relationships is likely the result of a mismatch between the scales of response variables and predictors. As a result, we calculated ecosystem‐scale fire emissions based on the total area burned because we could not discern other smaller scale predictors. Overall emissions from dormant, spring season prescribed fires at the Moquah Barrens were approximately 11,000 Mg (5.5 Mg ha−1) for C, 350 Mg for N (0.17 Mg ha−1), and 4,500 g for Hg (2.3 g ha−1).