Temperature cracks caused by the internal and external temperature gradient pose a threat to the durability of concrete structures. Phase change materials (PCM) offer a feasible solution by absorbing the released heat of cement hydration, yet of which the applications are limited by potential leakage and weak combination with cement matrix. Herein, this study employed silica as a protective shell to inhibit core PCM (n-octadecane, n-OD) from leaking, and enhance the compatibility with Portland cement. The surveyed core-to-shell mass ratios of PCM were chosen as 1:1, 1.5:1, and 2:1. The encapsulation of n-OD was successfully demonstrated by characterization results of Fourier transform-infrared spectroscopy (FT-IR), X-ray diffraction (XRD) and scanning electron microscopy (SEM). The microcapsules labeled M3 possessed the highest melting enthalpy of 183.4 J/g due to the highest core-to-shell ratio of 2:1 and exhibited good physico-chemical stability that pertained integrity after the mechanical mixing into cement paste. The effect of complexing M3 into cement paste was further investigated. The increasing dosage of M3 evidently remediated temperature rise that with highest dosage of 30.0 vol%, the maximum central temperature of cement paste decreased by 16.9 °C compared to the reference group. Moreover, it was unravelled that M3 components promote cement hydration and pore filling, thus with such high dosage of 30.0 vol%, the cement sample strength mildly decreased by 22.0%, which is dramatically lower compared with previous studies, i.e., at least ∼58.4% decrease in strength with similar dosage. Hence, the as-prepared M3 microcapsules can serve as promising functional additives for controlling the internal temperature rise of cement-based materials to mitigate the formation of temperature cracks.