Streams In Massachusetts Research Articles

Daily Patterns of River Herring (Alosa spp.) Spawning Migrations: Environmental Drivers and Variation among Coastal Streams in Massachusetts

AbstractThe timing of life history events in many plants and animals depends on the seasonal fluctuations of specific environmental conditions. Climate change is altering environmental regimes and disrupting natural cycles and patterns across communities. Anadromous fishes that migrate between marine and freshwater habitats to spawn are particularly sensitive to shifting environmental conditions and thus are vulnerable to the effects of climate change. However, for many anadromous fish species the specific environmental mechanisms driving migration and spawning patterns are not well understood. In this study, we investigated the upstream spawning migrations of river herring Alosa spp. in 12 coastal Massachusetts streams. By analyzing long‐term data sets (8–28 years) of daily fish counts, we determined the local influence of environmental factors on daily migration patterns and compared seasonal run dynamics and environmental regimes among streams. Our results suggest that water temperature was the most consistent predictor of both daily river herring presence–absence and abundance during migration. We found inconsistent effects of streamflow and lunar phase, likely due to the anthropogenic manipulation of flow and connectivity in different systems. Geographic patterns in run dynamics and thermal regimes suggest that the more northerly runs in this region are relatively vulnerable to climate change due to migration occurring later in the spring season, at warmer water temperatures that approach thermal maxima, and during a narrower temporal window compared to southern runs. The phenology of river herring and their reliance on seasonal temperature patterns indicate that populations of these species may benefit from management practices that reduce within‐stream anthropogenic water temperature manipulations and maintain coolwater thermal refugia.

Using Matrix-Assisted Laser Desorption/Ionization Time of Flight Spectra To Elucidate Species Boundaries by Matching to Translated DNA Databases.

A method has been established to map a bacterial colony to the ever-expanding database of publicly available bacterial genomes by means of matrix-assisted laser desorption/ionization (MALDI) spectra. To accomplish this, spectra are mapped to the predicted masses of ∼65 families of mostly ribosomal proteins. Each of the ∼40 000 bacterial strains in the database receives scores, together with tables listing identified protein sequences and how the highest ranking strains are related to one another. The approach was first confirmed with 16 distinct species of bacteria from the Vibrionales whose genome had been sequenced. Identifications of a few species of bacteria from environmental samples from compost, lakes, and streams in Massachusetts are also reported. Most of these organisms map to known species in the Gammaproteobacteria and Firmicutes. The clades of bacteria deducible from shared ribosomal protein sequences do not always correspond well to named bacterial species. Instead, the identifications made by this methodology indicate groupings of organisms that can readily be distinguished by MALDI-TOF and indicate which polymorphisms in highly conserved proteins demarcate the groupings. Successful identifications highlight organism interrelationships that can be deduced from the available genomes, sorting together genomes into new proposed clades typically consistent with relationships deduced from DNA sequence analysis. In contrast, if for a high-quality spectrum from a fresh colony, no group of related organisms receives high scores, one might infer that no closely related genome has yet been deposited into the database.

Declining ambient water phosphorus concentrations in Massachusetts’ rivers from 1999 to 2013: Environmental protection works

Over the last century, nutrient concentrations in streams, rivers, lakes and ponds have increased substantially in the United States. Elevated phosphorus levels are a concern due to their ability to cause changes in freshwater ecosystems that are detrimental to humans and wildlife. In the present study, long-term trends in total phosphorus (TP) concentrations from 20 rivers in central Massachusetts from 1999 to 2013 were investigated. Kendall's correlation coefficients were used to demonstrate that 18 of the 20 rivers had significant reductions in TP concentrations (P < 0.05). A similar trend was found when flow-adjusted TP concentrations were analyzed. At the beginning of monitoring activities, the average TP concentration in 9 of the 20 rivers was greater than 0.05 mg/L and 6 of these 9 rivers contained TP concentrations greater than 0.1 mg/L; about fifteen years later, only 3 rivers contained TP greater than 0.05 mg/L and none had concentrations> 0.1 mg/L. TP decreases were greater in rivers with more anthropogenic inputs. Principal component analysis (PCA) revealed that the decline of TP in these Massachusetts streams is likely the result of advancements in wastewater treatment and implementation of effective non-point source management practices.

Brook trout, Salvelinus fontinalis, microhabitat selection and diet under low summer stream flows

Abstract This study investigated the effects of low summer discharge on habitat, prey use and prey availability for age 1 brook trout, Salvelinus fontinalis (Mitchill), in two small streams in Massachusetts, USA. Stream discharge declined substantially from June to August, with corresponding decreases in microhabitat depth and velocity; but fish habitat preferences were consistent throughout the summer, with fish selecting deep, low current velocity locations. Invertebrate drift rate, drift density and trout stomach fullness were significantly greater in June than August samples. Diets were dominated by aquatic‐derived prey (chironomid larvae and adult blackflies) in June, but terrestrial invertebrates were the most frequent diet items in August. Consistent occupancy of low‐velocity, deep microhabitats with low invertebrate flux rates indicated that, despite variation in habitat and prey conditions, trout adopted a habitat‐use strategy of minimising risks and energy costs rather than maximising forage gain. This observation is consistent with, and provides a potential explanation for, the low summer growth rates of brook trout observed in small streams.

Quantitative PCR analysis of CYP1A induction in Atlantic salmon ( Salmo salar)

Environmental pollutants are hypothesized to be one of the causes of recent declines in wild populations of Atlantic salmon ( ̄ Salmo salar ) ̄ across Eastern Canada and the United States. Some of these pollutants, such as polychlorinated biphenyls and dioxins, are known to induce expression of the CYP1A subfamily of genes. We applied a highly sensitive technique, quantitative reverse transcription-polymerase chain reaction (RT-PCR), for measuring the levels of CYP1A induction in Atlantic salmon. This assay was used to detect patterns of CYP1A mRNA levels, a direct measure of CYP1A expression, in Atlantic salmon exposed to pollutants under both laboratory and field conditions. Two groups of salmon were acclimated to 11 and 17 °C, respectively. Each subject then received an intraperitoneal injection (50 mg kg −1) of either β-naphthoflavone (BNF) in corn oil (10 mg BNF ml −1 corn oil) or corn oil alone. After 48 h, salmon gill, kidney, liver, and brain were collected for RNA isolation and analysis. All tissues showed induction of CYP1A by BNF. The highest base level of CYP1A expression (2.56×10 10 molecules/μg RNA) was found in gill tissue. Kidney had the highest mean induction at five orders of magnitude while gill tissue showed the lowest mean induction at two orders of magnitude. The quantitative RT-PCR was also applied to salmon sampled from two streams in Massachusetts, USA. Salmon liver and gill tissue sampled from Millers River (South Royalston, Worcester County), known to contain polychlorinated biphenyls (PCBs), showed on average a two orders of magnitude induction over those collected from a stream with no known contamination (Fourmile Brook, Northfield, Franklin County). Overall, the data show CYP1A exists and is inducible in Atlantic salmon gill, brain, kidney, and liver tissue. In addition, the results obtained demonstrate that quantitative PCR analysis of CYP1A expression is useful in studying ecotoxicity in populations of Atlantic salmon in the wild.

PHYLOGEOGRAPHY AND WITHIN‐STREAM GENETIC VARIATION OF BATRACHOSPERMUM HELMENTOSUM (RHODOPHYTA) USING INTER‐SIMPLE SEQUENCE REPEATS

A relatively new molecular marker technique, inter‐simple sequence repeats (ISSR), was used to assess the within‐stream reach genetic variation and phylogeography of the freshwater red alga, Batrachospermum helmentosum. The within‐stream reach study was undertaken in Southeastern Ohio, where 58 individuals were collected from an approximately 200 m stream length. Individuals appeared to be congregated into three distinct areas, with no plants between areas. Using three primers, 100 polymorphic bands were scored. Although it was hypothesized that genetic variation would reflect physical distance, the results showed six distinct genetic groupings, some of which consisted of physically distant individuals. Overall, genetic diversity was greater among individuals than between geographic and genetic groups. To investigate phylogeography, 11 stream reaches (3 from Ohio and one each from Connecticut, Massachusetts, Rhode Island, North Carolina, Tennessee, Indiana, Michigan and Louisiana) were sampled throughout the alga's known distribution in North America. Approximately 15 individuals were collected per stream for ISSR analysis. Five primers, yielding 243 polymorphic bands, were used to examine variation among all individuals. Neighbor‐joining trees generated from the Dice, Jaccard and Excoffier coefficients showed that individuals from the same stream formed a clade. Among streams there was no distinct correlation between geographic distance and genetic similarity. Genetic groupings varied slightly among distance coefficients employed. Michigan and Tennessee, Connecticut and Rhode Island, and Indiana and Massachusetts streams consistently showed the same relationship, but the relationships among the three Ohio streams and Louisiana stream were variably related to each other.

Evidence of recovery from acidification in Massachusetts streams

A ten year survey of water quality in 330 Massachusetts streams was conducted to examine the rate and pattern of recovery from acidification. Meta-analysis was used to combine the results of the 330 non-parametric trend tests into an overall test for trend in a variety of water quality variables including pH, acid neutralizing capacity (ANC), and major inorganic ions. Analysis of trends in the raw data indicates both pH and ANC are increasing. After detrending for variations in stream runoff, we estimate the streams are recovering from acidification at a rate of +0.021 pH units/year and +2.4μeq/L/year, for pH and ANC respectively. These trends appear to be related to declines in sulfate (−1.8μeq/L/year), while base cation trends were mixed. Meta-analysis reveals the trends are not always homogeneous between seasons or between sites. While it is commonly assumed that the low ANC systems are most ‘sensitive’ to changes in acid or base inputs, we found the greatest rates of change in ANC were associated with the high ANC systems. The greatest increases in pH were seen in the low ANC streams as expected. The results also suggest streams respond quickly to changes in precipitation inputs and stream monitoring networks may be valuable as an early detection technique for changes in environmental quality.

Identification of road salt contamination using multiple regression and GIS

A multiple regression model of atmospheric deposition of salt, combined with geographic information systems (GIS) data on four classes of roads, is used to predict sodium concentrations in 162 randomly chosen streams in Massachusetts. All four classes of roads, as well as atmospheric deposition, were found to be highly significant in a model that explains 68% of the observed variation in sodium concentration. The highest salt loading rates are associated with interstate and major state roads with an estimated 22,500 and 17,700 kg of salt per kilometer, respectively. Our mass balance calculations indicate road salt is the major source of salt to the streams in Massachusetts.

Cooperative federal-state liming research on surface waters impacted by acidic deposition

In the eastern and north-central United States, lakes and streams with low acid neutralizing capacity are at risk from acidity. Resource management agencies are interested in developing mitigation strategies that protect or restore fisheries in these waters. Addition of limestone (calcium carbonate) to improve water quality and prevent episodic depressions of pH during precipitation events and spring runoff is one mitigation technique being used. The ecological changes that accompany such treatment of streams and lakes are being investigated in a cooperative program between the U.S. Fish and Wildlife Service and individual states. Streams in Massachusetts, West Virginia and Tennessee, and a lake in Minnesota are included in this 5-yr research program. Intensive monitoring during pre- and post-liming tracks a suite of physical, chemical and biological parameters that influence the re-establishment or maintenance of healthy fisheries. Supporting studies on liming being conducted at Adirondack lakes in New York focus on fisheries management. A model on the influence of liming on light attenuation and thermal stratification is also being developed. Management guidelines are to be generated from the program results.

Incidence of Crooked Vertebral Columns in Juvenile Atlantic Menhaden, Brevoortia tyrannus

Juvenile Atlantic menhaden from 20 estuaries between Florida and Massachusetts were visually examined for crooked vertebral columns. Only 12 abnormal juveniles were collected and all came from two streams in Massachusetts. Radiographs showed kyphosis, lordosis, scoliosis and fusion of the vertebral columns. These and previous observations suggest that crooked backbones may be endemic only to menhaden spawned in the extreme northern regions of their range. This is the first reported incidence in menhaden of scoliosis and of kyphosis and lordosis of the caudal vertebrae.

Nuclear Long-Range Fallout in Surface Waters

Measurements for and calculation of runoff coefficients of gross long range fallout beta radioactivity for several streams in Massachusetts and Genessee River, NY; measurements and analyses are presented that indicate selective uptake of certain radioactive nuclides in recently deposited fallout, although no individual species was identified.

The Comparative Returns of Various Sizes of Trout Stocked in Massachusetts Streams

The Comparative Returns of Various Sizes of Trout Stocked in Massachusetts Streams

Water Pollution Control by Interstate Cooperation: A Symposium: Classification of Massachusetts Streams

Water Pollution Control by Interstate Cooperation: A Symposium: Classification of Massachusetts Streams