Marine Nitrogen Research Articles

Riverine nutrient impact on global ocean nitrogen cycle feedbacks and marine primary production in an Earth system model

Abstract. Riverine nutrient export is an important process in marine coastal biogeochemistry and also impacts global marine biology. The nitrogen cycle is a key player here. Internal feedbacks are shown to regulate not only nitrogen distribution, but also primary production and thereby oxygen concentrations. Phosphorus is another essential nutrient and interacts with the nitrogen cycle via different feedback mechanisms. After a previous study of the marine nitrogen cycle response to riverine nitrogen supply, here we include phosphorus from river export with different phosphorus burial scenarios and study the impact of phosphorus alone and in combination with nitrogen in a global 3D ocean biogeochemistry model. Again, we analyse the effects on near-coastal and open-ocean biogeochemistry. We find that riverine export of bioavailable phosphorus alone or in conjunction with nitrogen affects marine biology on millennial timescales more than riverine nitrogen alone. Biogeochemical feedbacks in the marine nitrogen cycle are strongly influenced by additional phosphorus. Where bioavailable phosphorus increases with river input, nitrogen concentration increases as well, except for in regions with diminishing oxygen concentrations. High phosphorus burial rates decrease biological production significantly. Globally, the addition of riverine phosphorus in the modelled ocean leads to elevated primary production rates in the coastal and open oceans.

Influence of Terrigenious Inorganic Nitrogen on Marine Nitrogen Cycle Reconstruction Inferred from Sedimentary Bulk Nitrogen Isotope

This study reevaluates the application of sedimentary bulk nitrogen isotopes (δ15NTN) as proxies for reconstructing past marine nitrogen dynamics, traditionally assumed to reflect organic nitrogen (δ15NON) derived from marine productivity. Employing a novel method that utilizes persulfate oxidation to convert organic nitrogen (ON) and ammonium into nitrate, followed by nitrate reduction to nitrous oxide via denitrifying bacteria, we quantified and characterized both ON and inorganic nitrogen (IN) across diverse environments, including soils, rivers, lakes, and marine sediments. We found that IN, primarily sourced from clay-fixed ammonium via riverine and dust inputs, constitutes 30 % to 50 % of total nitrogen (TN) in marine sediments. Our findings reveal that δ15N values of IN are typically 2 ‰ to 5 ‰ lower than those of δ15NON, resulting in a − 0.5 ‰ to −2 ‰ negative shift in marine δ15NTN. This significant isotopic deviation necessitates a reevaluation of nitrogen cycle interpretations inferred from δ15NTN, especially regarding the potential underestimation of nitrate utilization in nitrate-rich regions and the overestimation of nitrogen fixation in oligotrophic oceans.

Nitrogen fixation in the North Atlantic supported by Gulf Stream eddy-borne diazotrophs

Mesoscale oceanic eddies contribute to the redistribution of resources needed for plankton to thrive. However, due to their fluid-trapping capacity, they can also isolate plankton communities, subjecting them to rapidly changing environmental conditions. Diazotrophs, which fix dinitrogen (N2), are key members of the plankton community, providing reactive nitrogen, particularly in large nutrient-depleted regions such as subtropical gyres. However, there is still limited knowledge about how mesoscale structures characterized by specific local environmental conditions can affect the distribution and metabolic response of diazotrophs when compared with the large-scale dynamics of an oceanic region. Here we investigated genetic diazotroph diversity and N2 fixation rates in a transect across the Gulf Stream and two associated eddies, a region with intense mesoscale activity known for its important role in nutrient transport into the North Atlantic Gyre. We show that eddy edges are hotspots for diazotroph activity with potential community connectivity between eddies. Using a long-term mesoscale eddy database, we quantified N2 fixation rates as up to 17 times higher within eddies than in ambient waters, overall providing ~21 µmol N m−2 yr−1 to the region. Our results indicate that mesoscale eddies are hotspots of reactive nitrogen production within the broader marine nitrogen cycle.

Significance of Urea in Sustaining Nitrite Production by Ammonia Oxidizers in the Oligotrophic Ocean

AbstractNitrification, the stepwise oxidation of ammonia to nitrate via nitrite, is a key process in the marine nitrogen cycle. Reported nitrite oxidation rates frequently exceed ammonia oxidation rates below the euphotic zone, raising the fundamental question of whether the two steps are balanced and if alternative sources contribute to nitrite production in the dark ocean. Here we present vertically resolved profiles of ammonia, urea, and nitrite oxidation rates and their kinetic traits in the oligotrophic Subtropical North Pacific. Our results show active urea‐derived nitrogen oxidation (urea‐N oxidation) in the presence of experimental ammonium amendment, suggesting direct urea utilization. The depth‐integrated rates of urea‐N oxidation and ammonia oxidation are comparable, demonstrating that urea‐N oxidation is a significant source of nitrite. The additional nitrite from urea‐N oxidation helps to balance the two steps of nitrification in our study region. Nitrifiers exhibit high affinity for their substrates, and the apparent half‐saturation constants for ammonia and nitrite oxidation decrease with depth. The apparent half‐saturation constant for urea‐N oxidation is higher than that for ammonia oxidation and shows no clear vertical trend. Such kinetic traits may account for the relatively higher urea concentration than ammonium concentration in the ocean's interior. Moreover, a compilation of our results and reported data shows a trend of increased urea‐N oxidation relative to ammonia oxidation from the eutrophic coastal zone to the oligotrophic open ocean. This trend reveals a substrate‐dependent biogeographic distribution of urea‐N oxidation across marine environments and provides new information on the balance and flux of the marine nitrification process.

Distribution Characteristics of Nitrogen-Cycling Microorganisms in Deep-Sea Surface Sediments of Western South China Sea.

Nitrogen-cycling processes in the deep sea remain understudied. This study investigates the distribution of nitrogen-cycling microbial communities in the deep-sea surface sediments of the western South China Sea, using metagenomic sequencing and real-time fluorescent quantitative PCR techniques to analyze their composition and abundance, and the effects of 11 environmental parameters, including NH4+-N, NO3--N, NO2--N, PO43--P, total nitrogen (TN), total organic carbon (TOC), C/N ratio, pH, electrical conductivity (EC), SO42-, and Cl-. The phylum- and species-level microbial community compositions show that five sites can be grouped as a major cluster, with sites S1 and S9 forming a sub-cluster, and sites S13, S19, and S26 forming the other; whereas sites S3 and S5 constitute a separate cluster. This is also evident for nitrogen-cycling functional genes, where their abundance is influenced by distinct environmental conditions, including water depths (shallower at sites S1 and S9 against deeper at sites S13, S19, and S26) and unique geological features (sites S3 and S5), whereas the vertical distribution of nitrogen-cycling gene abundance generally shows a decreasing trend against sediment depth. Redundancy analysis (RDA) exploring the correlation between the 11 environmental parameters and microbial communities revealed that the NO2--N, C/N ratio, and TN significantly affect microbial community composition (p < 0.05). This study assesses the survival strategies of microorganisms within deep-sea surface sediments and their role in the marine nitrogen cycle.

Large nitrogen cycle perturbations during the Early Triassic hyperthermal

Ocean temperature, redox state, circulation, and nutrient levels regulate the marine nitrogen (N) cycle, yet their specific impacts during greenhouse intervals remain poorly understood. Here, we examined the Smithian–Spathian hyperthermal event (∼250.5 Ma) during the Early Triassic greenhouse using stable N isotopes (δ15N) from sedimentary records in the Nanpanjiang Basin and Northern Yangtze Basin of South China. The δ15N profiles in both basins reveal consistent trends that correspond to fluctuations in temperature across the Smithian–Spathian transition. The Smithian hyperthermal interval exhibited low δ15N values (mostly <+2‰), indicating N deficiency and enhanced biological N2 fixation. Bacterial blooms and the release of the potent greenhouse gas N2O, enhanced by high temperatures, may have triggered positive feedback mechanisms that sustained the warming and contributed to the late Smithian extinction. During subsequent cooling across the Smithian–Spathian transition, δ15N increased to a range of +3‰ to +7‰, likely reflecting signals of partial denitrification based on reconstruction of the NO3− inventory associated with oceanic cooling and oxygenation. The prevailing increases in sedimentary TOC/TN ratios signify heightened deamination (removal of amino groups) and N recycling across the Smithian–Spathian boundary. This transition is likely attributed to cooling-driven amelioration of seawater stratification and anoxia from the Smithian to the Spathian, which resulted in increased nitrate availability in the photic zone. Eukaryotic algae thrived while prokaryotes declined during the Spathian, evidenced by elevated δ15N and Δ13Ccarb-org (the difference between carbonate and organic carbon isotopes). The proliferation of eukaryotic algae had a positive impact on environmental conditions and facilitated biotic recovery due to more efficient burial of organic particles. A notable latitudinal gradient in the N cycle response was observed, with low-latitude regions showing a more pronounced response to cooling compared to mid-latitude areas. This significant gradient may suggest that the rapid recovery of nutrient cycles, despite relatively small decline in high temperature, was a key factor in the amelioration of climate and recovery of life in low latitudes. These findings highlight that the marine N cycle is highly sensitive to temperature changes, particularly in low-latitude regions, and that changes in N cycle under high-temperature conditions may be a critical life-limiting factor.

Global Phylogeography and Microdiversity of the Marine Diazotrophic Cyanobacteria Trichodesmium and UCYN-A.

Cyanobacterial diazotrophs, specifically the genera Trichodesmium and UCYN-A, play a pivotal role in marine nitrogen cycling through their capacity for nitrogen fixation. Despite their global distribution, the microdiversity and environmental drivers of these diazotrophs remain underexplored. This study provides a comprehensive analysis of the global diversity and distribution of Trichodesmium and UCYN-A using the nitrogenase gene ( nifH ) as a genetic marker. We sequenced 954 samples from the Pacific, Atlantic, and Indian Oceans as part of the Bio-GO-SHIP project. Our results reveal significant phylogenetic and biogeographic differences between and within the two genera. Trichodesmium exhibited greater microdiversity compared to UCYN-A, with clades showing region-specific distribution. Trichodesmium clades were primarily influenced by temperature and nutrient availability, and particularly frequent in regions of phosphorus stress. In contrast UCYN-A was found in regions of iron stress. UCYN-A clades demonstrated a more homogeneous distributions, with a single sequencing variant within the UCYN-A1 clade dominating across varied environments. The biogeographic patterns and environmental correlations of Trichodesmium and UCYN-A highlight the role of microdiversity in their ecological adaptation and reflect their different ecological strategies. This study underscores the importance of characterizing the global patterns of fine-scale genetic diversity to better understand the functional roles and distribution of marine nitrogen-fixing cyanobacteria.

Physical optima for nitrogen fixation in cyclonic eddies in the Subtropical Northwestern Pacific

Nitrogen fixation is a vital new nitrogen source in the oligotrophic ocean. Although our knowledge of the controlling factors of marine nitrogen fixation have increased rapidly, the physical controls, particularly eddies-induced upwelling and light intensity, remain elusive. In this study, conducted in the Subtropical Northwestern Pacific, we measured nitrogen fixation rates (NFR) in two cyclonic eddies (CEs). Our observations in one CE revealed that depth-integrated NFR (INFR) in core stations were significantly higher than in edge stations, indicating that CEs-induced upwelling might enhance nitrogen fixation. However, more intense upwelling in another CE resulted in lower INFR in core stations compared to edge stations. The INFR distributions in CEs were driven by the upwelling intensity, showing a unimodal response, i.e., the maximum INFR appeared at optimal upwelling intensity. This finding reconciles the debate about whether CEs inhibit nitrogen fixation. Additionally, results from light manipulation incubations proved that light intensity is a key driver for the vertically unimodal pattern of NFR, i.e., peaks at the subsurface layer with an optimum light intensity of 20% to 50% of surface PAR. Furthermore, molecular evidence showed that UCYN-A dominated in the upwelling area, while UCYN-B dominated in the non-upwelling area, indicating that CEs-induced physical perturbation regulates the niches of diazotrophs. Taken together, these results suggest that physical dynamics exert profound controls on the spatial heterogeneity of diazotrophic distribution and activity in the Subtropical Northwestern Pacific, providing new insights into the physical drivers of nitrogen fixation on mesoscale hydrodynamics..

Shallow-water redox changes and nitrogen cycles in the early Cambrian Nanhua Basin, South China

Widespread oceanic anoxia has been frequently invoked for metazoan extinctions during the Cambrian. However, this hypothesis remains to be debated. In this study, we measured total organic carbon (TOC), total bulk nitrogen (TNbulk), iron speciation, major and trace elements, and isotopic compositions of sedimentary bulk nitrogen (δ15Nbulk) for the Shiyantou Formation in the Meishucun section. Our results suggest ferruginous conditions and high productivity in the lower member (LM: 0–16.0 m), dominantly suboxic conditions and low productivity in the middle member (MM: 16.0–23.7 m), and oxic conditions and low productivity in the upper member (UM: 23.7–28.0 m). Low δ15Nbulk values (average 1.0 ‰) in the LM suggest quantitative assimilation of NH4+ and strong nitrogen fixation as a consequence of high primary productivity and widespread water-column reducing conditions in the Nanhua Basin. δ15Nbulk values close to 0 ‰ in the MM suggest intense nitrogen fixation owing to quantitative denitrification and anammox in an oligotrophic environment. Low δ15Nbulk values (average 1.2 ‰) in the UM are indicative of marine nitrogen limitations in an oligotrophic environment. These findings suggest a similar range of low δ15Nbulk values might result from different environments. In comparison with marine redox conditions and δ15Nbulk data from the other coeval sections in the Nanhua Basin, we propose that widespread anoxic conditions might cause the extinction of small shelly faunas. More importantly, the oligotrophic environment and anoxic conditions might delay the recovery of small shelly faunas in the shallow and deep waters of the Nanhua Basin, respectively.

Societal impacts of marine nitrogen pollution: rapid evidence assessment and future research

Nitrogen pollution is a global problem and to effectively mitigate the effects we need to understand both the ecological and societal impacts. Coral reefs are of particular concern, as they are a critical source of livelihoods, culture, and wellbeing for hundreds of millions of people. Yet they are rapidly declining due to numerous pressures, with nitrogen pollution identified as a top-ranked non-climatic pressure. A Rapid Evidence Assessment was carried out to understand the societal impacts derived from marine nitrogen pollution on coral reefs. The results highlight key research evidence gaps, such as unclear reporting of nitrogen pollution, not distinguishing impacts from nitrogen and other stressors, non-quantification of nitrogen-specific marine and societal impacts, unstudied global regions with high nitrogen pressure, and the need for greater awareness on marine nitrogen pollution. Future research questions are proposed to allow better understanding on how tropical coastal societies are being impacted by marine nitrogen pollution.

Marine Colloids Boost Nitrogen Fixation in Trichodesmium erythraeum by Photoelectrophy.

Nitrogen fixation by the diazotrophic cyanobacterium Trichodesmium contributes up to 50% of the bioavailable nitrogen in the ocean. N2 fixation by Trichodesmium is limited by the availability of nutrients, such as iron (Fe) and phosphorus (P). Although colloids are ubiquitous in the ocean, the effects of Fe limitation on nitrogen fixation by marine colloids (MC) and the related mechanisms are largely unexplored. In this study, we found that MC exhibit photoelectrochemical properties that boost nitrogen fixation by photoelectrophy in Trichodesmium erythraeum. MC efficiently promote photosynthesis in T. erythraeum, thus enhancing its growth. Photoexcited electrons from MC are directly transferred to the photosynthetic electron transport chain and contribute to nitrogen fixation and ammonia assimilation. Transcriptomic analysis revealed that MC significantly upregulates genes related to the electron transport chain, photosystem, and photosynthesis, which is consistent with elevated photosynthetic capacities (e.g., Fv/Fm and carboxysomes). As a result, MC increase the N2 fixation rate by 67.5-89.3%. Our findings highlight a proof-of-concept electron transfer pathway by which MC boost nitrogen fixation, broadening our knowledge on the role of ubiquitous colloids in marine nitrogen biogeochemistry.

Microbial Diversity and Nitrogen Cycling in Peat and Marine Soils: A Review

Nitrogen is an essential nutrient for living organisms in peat and marine soils, and its transformation within the soil matrix is a complex process mediated by various microbes that inhabit these ecological niches. The metabolism of nitrogen is governed by microbially mediated biogeochemical transformations, such as nitrification, anammox, and denitrification, which contribute to the assimilated pool of nitrogen and fixed nitrogen loss. One of the major challenges facing the field of peat and marine microbiology is the lack of understanding of the correlation between ecosystem-driven nitrogen transformation and microbial diversity. This is crucial because of growing concerns regarding the impacts of human-induced activities and global climate change on microbial nitrogen-cycling processes in peat and marine soils. Thus, this review aimed to provide a comprehensive overview of the current understanding of the microbial communities involved in peat and marine nitrification, anammox, and denitrification; the factors influencing the niche differentiation and distribution of the main functional components; the genes involved; and the main effects of human-induced activities and global climate change on the peat and marine nitrogen cycle. The implications of this review will facilitate an understanding of the complex mechanisms associated with ecosystem function in relation to nitrogen cycling, the role of peat and marine soils as carbon sinks, pollution remediation using naturally occurring populations of diverse microbes, and the development of policies to mitigate the effects of anthropogenic influences in peat and marine soils.

Automated Method for the Sensitive Analysis of Volatile Amines in Seawater.

Methylamines are polar, volatile, and organic nitrogen-containing compounds. They are challenging to analyze, limiting our understanding of their occurrence and role within the marine nitrogen cycle. We describe an automated headspace solid-phase microextraction method, coupled with gas chromatography and nitrogen phosphorus detection (HS-SPME-GC-NPD), for analyzing methylamines in seawater. Three SPME conditions were investigated: temperature, equilibration, and extraction. The method was 6-24 times more sensitive to trimethylamine (TMA) than to dimethylamine (DMA) and monomethylamine (MMA). DMA and TMA were detected in small seawater volumes (2.5-10 mL), at volumes 100-400 times that previously reported. Detection limits of 19.1, 6.6, and 4.1 nM (nMol L-1) for MMA, DMA, and TMA, respectively, were measured in 10 mL sample volumes. Sample throughput was 4-6 times greater than previously reported similar methods. According to the Blue Applicability Grade Index (BAGI) metric, the method was considered "practical" and scored 62.5. The method was used to measure methylamines in seawater samples collected from the Southern Ocean. DMA and TMA were detected at concentrations from < LoD-35 nM and < LoD-48 nM, respectively. This study offers a systematic and standardized method for MA analysis in seawater and can significantly advance understanding of their role in marine systems.

Interannual Variability of Marine Nitrogen Fixation in the Western Tropical Atlantic

AbstractN2 fixation is a central process of the marine nitrogen cycle, yet little is known about how this process varies from year‐to‐year. Here, we investigate this variability in the Western Tropical Atlantic (WTA), a region where N2 fixation is prevalent, fueled, in part, by the nutrient input from the Amazon River. We use hindcast simulations from 1983 through 2019 with the Regional Oceanic Modeling System (ROMS) coupled to the Biogeochemical Elemental Cycling (BEC) model expanded to include Diatom‐Diazotroph Assemblages (DDAs). Throughout the WTA, we find a substantial level of interannual variability of N2 fixation, altering it by up to 33%, and locally by up to nearly 60%. Part of this interannual variability is driven by variations in the Amazon River discharge, which during high discharge events leads to reduced rates in the upper parts of the plume and strongly enhanced rates in the downstream part. This dipole pattern is a consequence of the riverine inputs of phosphorus and the competition with non‐diazotrophs for this limiting resource. Another part of the N2 fixation variability is driven by the Atlantic Meridional Mode (AMM), and the El Niño‐Southern Oscillation (ENSO). These processes alter N2 fixation primarily through the supply of the limiting nutrients phosphorus and iron by vertical mixing, while the role of top‐down control through grazing is relatively limited in our model. The high, and so far not well recognized interannual N2 fixation variability can lead to erroneous extrapolation of field measurements and inaccuracies in the marine nitrogen budget, if unaccounted for.

Nitrate fate in coastal unconfined aquifers influenced by preferential flows

This study examined the influence of preferential flow on pore water flows and marine nitrogen transport reaction in variable saturation and variable density coastal aquifers. The 2-D unconfined aquifer model established was based on the software COMSOL by coupling the dynamic and chemical processes together. The results showed that preferential flow affects groundwater flow and salinity distribution, leading to a more complicated mixing process. The preferential flow resulted in an increase in mixing zone area and the upper saline plume area of 10.33 and 2.62 m2, respectively, a decrease in saltwater wedge area of 7.22 m2, and an increase in nitrate (NO3-) removal efficiency from 7.9% to 8.97%. The NO3- removal efficiency increases progressively with the depth (h) and quantity (n) of preferential flows; however, it decreases after a certain quantity. Further quantitative analysis revealed an increase in the intensity of nitrification and dissolved oxygen inflow flux with preferential flow depth and quantity increase. This phenomenon usually occurs on coasts where biological caves are abundant. The results also offer significant implications for designing engineering measures to mitigate saltwater intrusion and are significant to prevent groundwater quality deterioration in coastal zones.

Nanoplastics impair growth and nitrogen fixation of marine nitrogen-fixing cyanobacteria

Nanoplastics pollution is a growing environmental problem worldwide. Recent research has demonstrated the toxic effects of nanoplastics on various marine organisms. However, the influences of nanoplastics on marine nitrogen-fixing cyanobacteria, a critical nitrogen source in the ocean, remained unknown. Here, we report that nanoplastics exposure significantly reduced growth, photosynthetic, and nitrogen fixation rates of Crocosphaera watsonii (a major marine nitrogen-fixing cyanobacterium). Transcriptomic analysis revealed that nanoplastics might harm C. watsonii via downregulation of photosynthetic pathways and DNA damage repair genes, while genes for respiration, cell damage, nitrogen limitation, and iron (and phosphorus) scavenging were upregulated. The number and size of starch grains and electron-dense vacuoles increased significantly after nanoplastics exposure, suggesting that C. watsonii allocated more resources to storage instead of growth under stress. We propose that nanoplastics can damage the cell (e.g., DNA, cell membrane, and membrane-bound transporters), inhibit nitrogen and carbon fixation, and hence lead to nutrient limitation and impaired growth. Our findings suggest the possibility that nanoplastics pollution could reduce the new nitrogen input and hence affect the productivity in the ocean. The impact of nanoplastics on marine nitrogen fixation and productivity should be considered when predicting the ecosystem response and biogeochemical cycling in the changing ocean.

Changes in isotope fractionation during nitrate assimilation by marine eukaryotic and prokaryotic algae under different pH and CO2 conditions

AbstractThe impact of environmental factors on nitrogen (N) and oxygen (O) isotope effects during algal nitrate assimilation causes uncertainty in the field application of sedimentary N isotope records and nitrate isotopes to understand the marine nitrogen cycle. Ocean acidification is predicted to change nitrogen cycling including nitrate assimilation, but how N and O isotope effects during algal nitrate assimilation vary in response to changes in seawater pH and partial pressure CO2 (pCO2) remains unknown. We measured N and O isotope effects during nitrate assimilation and physiological states of the marine diatom Thalassiosira weissflogii and Synechococcus under different pH (8.1 or 7.8) and pCO2 (400 or 800 μatm) conditions. Low pH and/or high pCO2 equally decreased N and O isotope effects during nitrate assimilation by diatoms possibly due to reducing cellular nitrate efflux/uptake ratio and decreased isotope effects for nitrate uptake, whereas they did not affect those by Synechococcus with low intracellular nitrate concentration and limited nitrate efflux. Our results provide compelling experimental evidence showing different changes in N and O isotope effects during nitrate assimilation by marine eukaryotic and prokaryotic phytoplankton at low pH and/or high pCO2. These findings suggest new insight into environmental controls on variability in the isotope effect during algal nitrate assimilation, and have implications for improving a predictive understanding of N and O isotope tools in acidified oceans.

Novel Alphaproteobacteria transcribe genes for nitric oxide transformation at high levels in a marine oxygen-deficient zone.

Marine oxygen-deficient zones (ODZs) are portions of the ocean where intense nitrogen loss occurs primarily via denitrification and anammox. Despite many decades of study, the identity of the microbes that catalyze nitrogen loss in ODZs is still being elucidated. Intriguingly, high transcription of genes in the same family as the nitric oxide dismutase (nod) gene from Methylomirabilota has been reported in the anoxic core of ODZs. Here, we show that the most abundantly transcribed nod genes in the Eastern Tropical North Pacific ODZ belong to a new order (UBA11136) of Alphaproteobacteria, rather than Methylomirabilota as previously assumed. Gammaproteobacteria and Planctomycetia also transcribe nod, but at lower relative abundance than UBA11136 in the upper ODZ. The nod-transcribing Alphaproteobacteria likely use formaldehyde and formate as a source of electrons for aerobic respiration, with additional electrons possibly from sulfide oxidation. They also transcribe multiheme cytochrome (here named ptd) genes for a putative porin-cytochrome protein complex of unknown function, potentially involved in extracellular electron transfer. Molecular oxygen for aerobic respiration may originate from nitric oxide dismutation via cryptic oxygen cycling. Our results implicate Alphaproteobacteria order UBA11136 as a significant player in marine nitrogen loss and highlight their potential in one-carbon, nitrogen, and sulfur metabolism in ODZs.IMPORTANCEIn marine oxygen-deficient zones (ODZs), microbes transform bioavailable nitrogen to gaseous nitrogen, with nitric oxide as a key intermediate. The Eastern Tropical North Pacific contains the world's largest ODZ, but the identity of the microbes transforming nitric oxide remains unknown. Here, we show that highly transcribed nitric oxide dismutase (nod) genes belong to Alphaproteobacteria of the novel order UBA11136, which lacks cultivated isolates. These Alphaproteobacteria show evidence for aerobic respiration, using oxygen potentially sourced from nitric oxide dismutase, and possess a novel porin-cytochrome protein complex with unknown function. Gammaproteobacteria and Planctomycetia transcribe nod at lower levels. Our results pinpoint the microbes mediating a key step in marine nitrogen loss and reveal an unexpected predicted metabolism for marine Alphaproteobacteria.

Mitigation effects of ammonium on microbiologically influenced corrosion of 90/10 copper-nickel alloy caused by Pseudomonas aeruginosa

Currently, the microbiologically influenced corrosion (MIC) of 90/10 copper-nickel (Cu–Ni) has garnered increased attention. Pseudomonas aeruginosa, a prevalent nitrate-reducing bacteria in seawater, is a notable participant in the process of marine nitrogen cycle. This study seeks to investigate the impact of NH4+ on the corrosion process of 90/10 Cu–Ni alloy in the P. aeruginosa media. The results revealed that the average pit depth of the alloy coupons was 4.4 ± 0.2μm in the P. aeruginosa media, whereas the average pit depth reduced to 2.8 ± 0.1 μm in the P. aeruginosa + NH4+ media. In the P. aeruginosa media, the corrosion current density (icorr) was 4.96 × 10−7 A cm−2, while in the P. aeruginosa + NH4+ media, the icorr decreased to 2.45 × 10−7 A cm−2. The excess NH4+ led to a reduction in the P. aeruginosa biofilm thickness (23.4 μm vs. 35.6 μm), facilitated the underlying P. aeruginosa sessile cells to obtain energy from free organic carbon more easily. Additionally, the interaction of Cu with NH3 led to the formation of the unstable complex Cu(NH3)2+, ultimately resulting in the formation of a protective Cu2O layer on the alloy surface, thus mitigating the 90/10 Cu–Ni alloy MIC.

Marine nitrogen cycling in the aftermath of the Marinoan Snowball Earth

The termination of the Marinoan Snowball Earth (ca. 635 Ma) was marked by the global precipitation of cap carbonate, which might have coincided with global environmental and evolutionary changes, particularly the evolution of early animals in the ocean and a significant rise in atmospheric oxygen concentrations. High nitrogen isotopic compositions (δ15N) of the Ediacaran marine sediments indicate that the seawater was oxygen-rich and maintained a substantial nitrate reservoir following the Marinoan Snowball Earth. However, the lack of nitrogen isotope records in the wake of the Marinoan Snowball Earth became a stumbling block in understanding the relationships between marine nitrogen cycling and biological evolution during the deglaciation. This study reported the δ15N of the cap carbonate in the basal Doushantuo Formation from two sections spanning from shelf margin to basin in the Yangtze Block, South China. Our results show a descending pattern in δ15N values at the lower part of the sections, reaching a nadir of ∼ − 4‰. This trend suggests that upwelling brought an abundance of NH4+ during the mixing process of glacial meltwater and seawater, resulting in incomplete assimilation of NH4+. The relatively heavier δ15N values (∼0‰) in the upper part observed in cap carbonate provide evidence of the onset of nitrogen fixation after the physical stratification of seawater. This process can be attributed to restoring the thermohaline circulation in the ocean. However, the occurrence of nitrogen fixation and δ15N values greater than +2‰ had not been observed, indicating a stable reservoir of nitrate had not yet been established. Overall, our data indicate a gradual oxidation of the ocean and the recovery of aerobic nitrogen cycling during the Marinoan deglaciation, which probably influenced ocean primary productivity. A stable nutrient reservoir built after this transitional period might provide a nutrient basis for the early animal evolution in the early Ediacaran.