Structure Of Marine Ecosystems Research Articles

Nutrient enrichment can increase the thermal performance of Galápagos seaweeds

Thermal sensitivity in ectothermic organisms is often contingent upon environmental factors. Nutrient availability in particular is believed to influence the physiological responses of primary producers to global warming and is thus relevant to consider when forecasting the structure and functioning of future marine ecosystems. This study measured the effect of nutrient enrichment on the thermal sensitivity of 4 genera of Galápagos seaweeds (Ulva, Caulerpa, Padina, and Ochtodes), estimated as the thermal optimum (Topt), performance maximum (Pmax), activation energy, and deactivation energy. These parameters were quantified by modeling thermal performance curves for net photosynthesis under ambient and nutrient-enriched conditions. Our findings revealed variation in Topt among genera, ranging from 27.6° to 36.0°C. Nutrient additions enhanced Topt by ~2°C for 2 (Padina and Caulerpa) of the 4 taxa and also significantly increased Pmax in Padina, suggesting the ability for warming-induced ocean stratification and associated effects (i.e. decreasing nutrient availability) to reduce the capacities of these populations to maintain and support new growth. No significant differences in Topt or Pmax were observed for either Ulva or Ochtodes with enrichment. Ambient net photosynthesis and respiration rates were also compared across genera; Pmax rates for net photosynthesis were consistently higher than those for respiration (i.e. until just beyond Topt); however, photosynthetic Topt values were lower. Thus, this study suggests that further warming could reduce overall net primary productivity, with potentially far-reaching implications for marine food webs.

Baleen stable isotopes reveal climate-driven behavioural shifts in North Atlantic fin whales

Climate variability impacts the structure and functioning of marine ecosystems and can trigger behavioural responses in organisms. We investigated whether such variability modulates diet and migration in the North Atlantic fin whale (Balaenoptera physalus). To reconstruct the dietary and migratory behaviours over time, we conducted stable isotope analysis of nitrogen (δ15N) and carbon (δ13C) along baleen plates from 29 fin whales sampled off southwestern (SW) Iceland in summer. We estimated a baleen growth rate of 16.1 ± 2.5 cm per year from the stable isotope oscillations observed along the baleens. We also assigned a deposition date for each baleen segment, thus obtaining isotopic sequential time series. We then assessed the potential association of these time series with the main climate patterns of the North Atlantic basin. Baleen δ15N and δ13C values are associated with the North Atlantic Oscillation (NAO) and the Atlantic Multidecadal Oscillation (AMO). During high AMO and low NAO periods, which tend to decrease krill abundance, there is an increase in both the mean and standard deviation of baleen δ15N values, suggesting that fin whales shift to higher trophic resources and expand their dietary niche. Additionally, high AMO periods, which relate to positive temperature anomalies, lead to a decrease in baleen δ13C values, suggesting that fin whales adjust their migratory routes and destinations towards higher latitudes. Significant variation in isotopic niche width between years also reflected these dietary and migratory behavioural shifts. This highlights the plasticity of the North Atlantic fin whale behaviour, a trait likely to strengthen the resilience of the species within the current context of rapid and intense climate variability.

Impacts of microplastic ingestion on fish communities in Haizhou Bay, China

Microplastics are pervasive throughout aquatic ecological communities. While their negative impacts on the life history traits of aquatic species are well studied, the effects on community dynamics remain elusive. Consequently, community-level assessments of microplastic effects on marine food webs are largely lacking, creating significant knowledge gaps regarding marine ecosystem structure and dynamics in the context of microplastic contamination. Here we expand a multispecies size-spectrum model by incorporating microplastic impacts on individual life-history traits, ultimately allowing us to study microplastic-mediated structural and functional changes in fish communities. As expected, microplastic ingestion may drive species extinction, but the microplastic-to-food ratio threshold for extinction is species-specific, and not necessarily correlated with species’ asymptotic weights. Interestingly, species responses to microplastics also propagate through the community as ingestion triggers both bottom-up and top-down effects on community dynamics. Which specific type of cascading effect is dominating depends on which species is ingesting microplastics as well as its trophic role in the community. Generally, low-trophic-level species ingesting microplastics can exert large detrimental effects on community biomass. Thus, this study highlights the necessity for a comprehensive risk assessment of species-specific responses to microplastic contamination as well as an understanding of individual species’ role in their communities.

Extinction cascades, community collapse, and recovery across a Mesozoic hyperthermal event

Mass extinctions are considered to be quintessential examples of Court Jester drivers of macroevolution, whereby abiotic pressures drive a suite of extinctions leading to huge ecosystem changes across geological timescales. Most research on mass extinctions ignores species interactions and community structure, limiting inference about which and why species go extinct, and how Red Queen processes that link speciation to extinction rates affect the subsequent recovery of biodiversity, structure and function. Here, we apply network reconstruction, secondary extinction modelling and community structure analysis to the Early Toarcian (Lower Jurassic; 183 Ma) Extinction Event and recovery. We find that primary extinctions targeted towards infaunal guilds, which caused secondary extinction cascades to higher trophic levels, reproduce the empirical post-extinction community most accurately. We find that the extinction event caused a switch from a diverse community with high levels of functional redundancy to a less diverse, more densely connected community of generalists. Recovery was characterised by a return to pre-extinction levels of some elements of community structure and function prior to the recovery of biodiversity. Full ecosystem recovery took ~7 million years at which point we see evidence of dramatically increased vertical structure linked to the Mesozoic Marine Revolution and modern marine ecosystem structure.

Urbanization alters sandy beach scavenging assemblages and dogs suppress ecosystem function

AbstractUrbanization is rapidly transforming coastal landscapes around the world, altering the structure and function of marine, intertidal, and terrestrial ecosystems. In tandem, coastal areas are hotspots for human recreation, leading to shifts in wildlife behavior and activity patterns. Together, urban development and recreational use of wildlife habitats can shape wildlife behavior, abundance, and ecosystem dynamics at different spatial and temporal scales. In this study, we explore the impact of urbanization and human and domestic dog activity on the structure of vertebrate scavenging assemblages and the ecosystem functions they provide in sandy beach ecosystems across 40 km of the central California coast, USA. We surveyed vertebrate scavenging assemblages using baited camera traps on 17 beaches spanning a gradient of coastal urbanization. We found that urbanization extent within small spatial scales (i.e., 1 or 3 km radii of each site) and the rate of beach visitation by domestic dogs or humans were the best additive predictors of assemblage structure. We identified pronounced urbanization‐associated shifts in the composition of vertebrate scavenger guilds but found that the rate of carrion processing was more strongly influenced by domestic dog habitat use and diel period. Scavenging activity was substantially lower on beaches with more domestic dogs, suggesting that dogs interfere with critical scavenging ecosystem functions on sandy beaches. Our results underscore the pervasive and nuanced effects of urbanization and recreation on the dynamics of land–sea connectivity and suggest a need for comprehensive consideration of cross‐ecosystem linkages in ongoing shoreline conservation and development efforts.

The effects of polystyrene microplastics on feeding, growth, and trophic upgrading of protozoan grazers

Microplastics have become ubiquitous in the global marine environment, posing substantial influences on marine organism health, food web function and marine ecosystem structure. Protozoan grazers are known for their ability to improve the biochemical constituents of poor-quality algae for subsequent use by higher trophic levels. However, the effects of microplastics on the trophic upgrading of protozoan grazers remain unknown. To address this knowledge gap, the ciliate Euplotes vannus and the heterotrophic dinoflagellate Oxyrrhis marina were exposed to microplastic particles (5 μm) for four days with various concentrations (1–20 mg/L). Both O. marina and E. vannus ingested microplastics. At the exposure level of 20 mg/L, the ingestion rate, growth rate, biovolume, and carbon biomass of E. vannus were significantly decreased by 28.18 %, 32.01 %, 30.46 %, and 82.27 %, respectively, while such effects were not observed for O. marina. The contents of highly unsaturated fatty acids in O. marina and E. vannus on a mixed diet of microplastic particles and green algae significantly reduced by 8.66 % and 41.49 % relative to feeding only on green algae, respectively. Besides, we also observed an increase in the composition of C18:3 (ω-3) and C20:3 (ω-3) concurrence with a significant decrease in C16:0 and C18:0 in E. vannus after 96 h exposure at 20 mg/L. These results indicate that microplastics can weaken trophic upgrading of the nutritional quality by protozoan grazers, which may consequently alter the function of food webs.

Advancing the climate-biodiversity-fisheries nexus in the UN Decade of Ocean Science for Sustainable Development

Abstract Climate-driven changes in marine ecosystem structure and function adversely impact the biodiversity and sustainability of living marine resources, food security, and the resilience of coastal communities. Understanding how climate change impacts marine ecosystem biodiversity and global fisheries, i.e. the “climate-biodiversity-fisheries nexus”, is a fundamental element of the UN Decade of Ocean Science for Sustainable Development. Several Ocean Decade-endorsed Programmes within the climate-biodiversity-fisheries nexus are building global networks to transform our capacity to understand, forecast, manage, and adapt to climate-driven changes in ocean ecosystems, including sustaining blue food resources that provide essential food security and nutrition in a rapidly changing world. We compare the scope, objectives, global partnerships, and capacities of these Programmes, facilitating effective collaboration and identifying critical gaps in developing solutions to climate-driven changes in marine food webs, species assemblages, and global fisheries. This work complements the Ocean Decade Vision 2030 process by providing an assessment of actions that are underway and guidance to establish new actions needed to monitor and understand marine biodiversity and manage global fisheries within a changing climate. We provide recommendations for new and existing Ocean Decade Actions around the climate-biodiversity-fisheries nexus to help achieve the Ocean Decade outcomes of a “productive, predicted, healthy, and resilient ocean” by 2030.

Generating open-source 3D phytoplankton models by integrating photogrammetry with scanning electron microscopy.

The community structure and ecological function of marine ecosystems are critically dependent on phytoplankton. However, our understanding of phytoplankton is limited due to the lack of detailed information on their morphology. To address this gap, we developed a framework that combines scanning electron microscopy (SEM) with photogrammetry to create realistic 3D (three-dimensional) models of phytoplankton. The workflow of this framework is demonstrated using two marine algal species, one dinoflagellate Prorocentrum micans and one diatom Halamphora sp. The resulting 3D models are made openly available and allow users to interact with phytoplankton and their complex structures virtually (digitally) and tangibly (3D printing). They also allow for surface area and biovolume calculations of phytoplankton, as well as the exploration of their light scattering properties, which are both important for ecosystem modeling. Additionally, by presenting these models to the public, it bridges the gap between scientific inquiry and education, promoting broader awareness on the importance of phytoplankton.

Insights on long-term ecosystem changes from stable isotopes in historical squid beaks

BackgroundAssessing the historical dynamics of key food web components is crucial to understand how climate change impacts the structure of Arctic marine ecosystems. Most retrospective stable isotopic studies to date assessed potential ecosystem shifts in the Arctic using vertebrate top predators and filter-feeding invertebrates as proxies. However, due to long life histories and specific ecologies, ecosystem shifts are not always detectable when using these taxa. Moreover, there are currently no retrospective stable isotopic studies on various other ecological and taxonomic groups of Arctic biota. To test whether climate-driven shifts in marine ecosystems are reflected in the ecology of short-living mesopredators, ontogenetic changes in stable isotope signatures in chitinous hard body structures were analysed in two abundant squids (Gonatus fabricii and Todarodes sagittatus) from the low latitude Arctic and adjacent waters, collected between 1844 and 2023.ResultsWe detected a temporal increase in diet and habitat-use generalism (= opportunistic choice rather than specialization), trophic position and niche width in G. fabricii from the low latitude Arctic waters. These shifts in trophic ecology matched with the Atlantification of the Arctic ecosystems, which includes increased generalization of food webs and higher primary production, and the influx of boreal species from the North Atlantic as a result of climate change. The Atlantification is especially marked since the late 1990s/early 2000s. The temporal patterns we found in G. fabricii’s trophic ecology were largely unreported in previous Arctic retrospective isotopic ecology studies. Accordingly, T. sagittatus that occur nowadays in the high latitude North Atlantic have a more generalist diet than in the XIXth century.ConclusionsOur results suggest that abundant opportunistic mesopredators with short life cycles (such as squids) are good candidates for retrospective ecology studies in the marine ecosystems, and to identify ecosystem shifts driven by climate change. Enhanced generalization of Arctic food webs is reflected in increased diet generalism and niche width in squids, while increased abundance of boreal piscivorous fishes is reflected in squids’ increased trophic position. These findings support opportunism and adaptability in squids, which renders them as potential winners of short-term shifts in Arctic ecosystems.

Geobiology: Machine learning puts bioturbation on the map

Bioturbation, the mixing of sediment through the actions of organisms, is a crucial ecosystem engineering process that controls biogeochemical cycles and helps structure marine ecosystems. Machine learning is helping to develop global maps of the intensity and depth of bioturbation.

Large potential impacts of marine heatwaves on ecosystem functioning.

Ocean warming is driving significant changes in the structure and functioning of marine ecosystems, shifting species' biogeography and phenology, changing body size and biomass and altering the trophodynamics of the system. Particularly, extreme temperature events such as marine heatwaves (MHWs) have been increasing in intensity, duration and frequency. MHWs are causing large-scale impacts on marine ecosystems, such as coral bleaching, mass mortality of seagrass meadows and declines in fish stocks and other marine organisms in recent decades. In this study, we developed and applied a dynamic version of the EcoTroph trophodynamic modelling approach to study the cascading effects of individual MHW on marine ecosystem functioning. We simulated theoretical user-controlled ecosystems and explored the consequences of various assumptions of marine species mortality along the food web, associated with different MHW intensities. We show that an MHW can lead to a significant biomass reduction of all consumers, with the severity of the declines being dependent on species trophic levels (TLs) and biomes, in addition to the characteristics of MHWs. Biomass of higher TLs declines more than lower TLs under an MHW, leading to changes in ecosystem structure. While tropical ecosystems are projected to be sensitive to low-intensity MHWs, polar and temperate ecosystems are expected to be impacted by more intense MHWs. The estimated time to recover from MHW impacts is twice as long for polar ecosystems and one-third longer for temperate biomes compared with tropical biomes. This study highlights the importance of considering extreme weather events in assessing the effects of climate change on the structures and functions of marine ecosystems.

What has Changed in 20 Years? Structure and Function of Soft-sediment Macrofauna in a Subarctic Embayment, Newfoundland (Canada)

Understanding how natural and anthropogenic disturbances affect the structure and functioning of marine ecosystems is central to predicting future dynamics. Placentia Bay is an Ecologically and Biologically Significant Area (EBSA) in the North Atlantic exposed to multiple stressors (e.g., rising sea surface temperatures, tanker traffic, and aquaculture). To investigate changes in the community and functional structure of soft-sediment macrofauna as well as environmental drivers of observed variation, we compared contemporary (2019–2020) and historical (1998) samples at eight stations (n = 77) collected 21 years apart. Although community and functional structure differed between these time points, functional traits were maintained (i.e., no loss of 36 trait modalities). Overall, 37% of species/taxa were only observed in either the historical or contemporary community, and the contemporary community exhibited lower macrofaunal density but had similar richness, resulting in higher evenness and diversity. Highly tolerant subsurface deposit feeders having small body sizes (< 10 mm) and direct development dominated the historical community. The contemporary community had nearly equal proportions of surface and subsurface deposit feeders with small to medium body sizes (< 10–50 mm) with pelagic larvae, and the proportion of highly tolerant species/taxa was reduced. These changes likely reflect the reduction in polychaetes (91 vs. 58%) and increased bivalves (4 vs. 25%) relative to the historical time point. Community variation was driven by changes in the sedimentary habitat. Contemporary versus historical sediments were ~ 4.5x coarser (possibly due to storms) with higher levels of sedimentary organic matter. This work contributes to advancing the understanding of relationships between benthic macrofauna, functional traits, and the sedimentary habitat in coastal environments.

Top predator status and trends: ecological implications, monitoring and mitigation strategies to promote ecosystem-based management

The conservation and management of marine ecosystems hinge on a comprehensive understanding of the status and trends of top predators. This review delves into the ecological significance of marine top predators, examining their roles in maintaining ecosystem stability and functioning through an integrated analysis of current scientific literature. We first assess the efficacy of various monitoring methods, ranging from traditional field observations to cutting-edge technologies like satellite tracking and environmental DNA (eDNA) analysis and evaluating their strengths and limitations in terms of accuracy, spatial coverage, and cost-effectiveness, providing resource managers with essential insights for informed decision-making. Then, by synthesizing data from diverse marine ecosystems, this study offers a comprehensive overview of the trends affecting top predator populations worldwide. We explore the multifaceted impacts of human activities, climate change, and habitat degradation on the abundance and distribution of these key species. In doing so, we shed light on the broader implications of declining top predator populations, such as trophic cascades and altered community structures. Following a thorough assessment of successful strategies for reversing the decline of top predators, a compilation of recommendations is presented, encompassing effective governance interventions. A crucial aspect of effective ecosystem-based management is the implementation of robust monitoring strategies. Mitigation measures are imperative to reverse the adverse impacts on marine top predators. We present a comprehensive array of mitigation options based on successful case studies. These include the establishment of marine protected areas, the enforcement of fisheries regulations, and the promotion of sustainable fishing practices. We deepen the synergies between these strategies and their potential to mitigate human-induced stressors on top predator populations to safeguard their pivotal role in maintaining marine ecosystem structure and function. By examining marine top predators’ ecological significance, analyzing population trends, discussing monitoring techniques, and outlining effective mitigation strategies, we provide a comprehensive resource for researchers, policymakers, and stakeholders engaged in fostering ecosystem-based management approaches. We conclude that integrating these insights into current management frameworks will be essential to safeguard both top predators and the broader marine environment for future generations.

Environmental controls on the seasonal variations of diatoms and dinoflagellates in the Qingdao coastal region, the Yellow Sea

Diatoms and dinoflagellates are two typical functional groups of phytoplankton assemblages, which play a crucial role in the structure and functioning of most marine ecosystems. To date, a novel challenge in ecology and biogeochemistry is to address the influences of environmental changes associated with climate change and human activities on the dynamics of diatoms and dinoflagellates. However, the knowledge of the key environmental factors controlling the diatom-dinoflagellate dynamics remains to be improved, particularly in the coastal ecosystems. Therefore, we conducted four cruises along the Qingdao coastline in spring, summer, autumn, and winter 2022 to explore how diatoms and dinoflagellates varied in response to regional environmental changes. The results showed that the phytoplankton communities were dominated by diatoms and dinoflagellates in terms of abundance and species diversity throughout the year in the study region. Yet, there were significant seasonal variability of diatoms and dinoflagellates across the four seasons. For example, diatom species was the most diverse during autumn, and the higher average abundance was observed in the fall and winter. In contrast, the average abundance of dinoflagellates was maximum during the summer and minimum in the autumn season. Moreover, the abundance and species ratios of diatoms/dinoflagellates (dia/dino) also showed significant seasonal variations in the region. The dia/dino abundance ratio was lowest in summer, while the dia/dino species ratio showed an increasing trend from spring to fall and a slight descending trend during winter. Based on the redundancy analysis, we revealed that diatoms and dinoflagellates responded differently to various environmental variables in different seasons, of which temperature and nutrients (especially dissolved inorganic nitrogen, DIN) had highly significant correlations with both the dia/dino abundance and species ratios. Thus, we suggested that temperature and DIN were the key factors controlling the seasonal dynamics of diatoms and dinoflagellates in the Qingdao coastal area.

Relative prevalence of top-down versus bottom-up control in planktonic ecosystem under eutrophication and climate change: A comparative study of typical bay and estuary

Eutrophication and climate change may affect the top-down versus bottom-up controls in aquatic ecosystems. However, the relative prevalence of the two controls in planktonic ecosystems along the eutrophication and climate gradients has rarely been addressed. Here, using the field surveys of 17 years in a typical bay and estuary, we test two opposite patterns of trophic control dominance and their response to regional temporal eutrophication and climate fluctuations. It was found that trophic control of planktonic ecosystems fluctuated between the dominance of top-down and bottom-up controls on time scales in both the bay and estuary studied. The relative prevalence of these two controls in both ecosystems was significantly driven directly by regional dissolved inorganic nitrogen but, for the estuary, also by the nonlinear effects of regional sea surface temperature. In terms of indirect pathways, community relationships (synchrony and grazing pressure) in the bay are driven by both regional dissolved inorganic nitrogen - soluble reactive phosphorus ratio and sea surface temperature, but this drive did not continue to be transmitted to the trophic control. Conversely, trophic control in estuary was directly related to grazing pressure and indirectly related to synchrony. These findings support the view that eutrophication and climate drive the relative prevalence of top-down versus bottom-up controls at ecosystem and temporal scales in planktonic ecosystems, which has important implications for predicting the potential impacts of anthropogenic and environmental perturbations on the structure and function of marine ecosystems.

Isopycnal Submesoscale Stirring Crucially Sustaining Subsurface Chlorophyll Maximum in Ocean Cyclonic Eddies

AbstractMesoscale and submesoscale processes have crucial impacts on ocean biogeochemistry, importantly enhancing the primary production in nutrient‐deficient ocean regions. Yet, the intricate biophysical interplay still holds mysteries. Using targeted high‐resolution in situ observations in the South China Sea, we reveal that isopycnal submesoscale stirring serves as the primary driver of vertical nutrient transport to sustain the dome‐shaped subsurface chlorophyll maximum (SCM) within a long‐lived cyclonic mesoscale eddy. Density surface doming at the eddy core increased light exposure for phytoplankton production, while along‐isopycnal submesoscale stirring disrupted the mesoscale coherence and drove significant vertical exchange of tracers. These physical processes play a crucial role in maintaining the elevated phytoplankton biomass in the eddy core. Our findings shed light on the universal mechanism of how mesoscale and submesoscale coupling enhances primary production in ocean cyclonic eddies, highlighting the pivotal role of submesoscale stirring in structuring marine ecosystems.

Unravelling the trophic ecology of poorly studied and threatened elasmobranchs inhabiting the Persian Gulf and Gulf of Oman

Elasmobranch population declines due to human impacts have been documented at a global scale, having impacts on the functioning and structure of marine ecosystems. This situation leads to an international focus on the conservation of their populations and a key step in the management and conservation of elasmobranch populations is to understand their trophic ecology. Here, by using stable isotopes analysis, we investigated the trophic relationships, trophic niche breadth, and trophic redundancy among 21 batoids and 12 sharks inhabiting the Persian Gulf and Gulf of Oman, two productive areas of the Arabian Sea considered global elasmobranch hotspots. Isotopic results revealed differences in the trophic niche and trophic position among the elasmobranch sampled at species and at family level. For example, the batoids of the family Torpedinidae and the sharks of the family Triakidae occupied higher trophic positions and the family Glaucostegidae showed a lower trophic niche width, whereas the batoids of the family Myliobatidae or Gymnuridae, in overall, showed lower higher trophic niche width, reflecting the trophic habits described for most of the sampled species. We also provided some insights into the ecology of poorly known species, especially relevant for those that are endangered at a global or regional scale. In conclusion, we provide new information about the trophic ecology among batoids and sharks inhabiting the Persian Gulf and Gulf of Oman. This information is highly useful to study the consequences of future changes on their feeding preferences due to natural or human-related factors.

The rise of macropredatory pliosaurids near the Early-Middle Jurassic transition

The emergence of gigantic pliosaurid plesiosaurs reshaped the trophic structure of Mesozoic marine ecosystems, and established an ~ 80 million-year (Ma) dynasty of macropredatory marine reptiles. However, the timescale of their ‘defining’ trait evolution is incompletely understood because the fossil record of gigantic pliosaurids is scarce prior to the late-Middle Jurassic (Callovian), ~ 165.3 Ma. Here, we pinpoint the appearance of large body size and robust dentitions to early-Middle Jurassic (Bajocian) pliosaurids from northeastern France and Switzerland. These specimens include a new genus that sheds light on the nascent diversification of macropredatory pliosaurids occurring shortly after the Early-Middle Jurassic transition, around ~ 171 Ma. Furthermore, our multivariate assessment of dental character states shows that the first gigantic pliosaurids occupied different morphospace from coeval large-bodied rhomaleosaurid plesiosaurs, which were dominant in the Early Jurassic but declined during the mid-Jurassic, possibly facilitating the radiation and subsequent ecomorph acme of pliosaurids. Finally, we posit that while the emergence of macropredatory pliosaurids was apparently coordinated with regional faunal turnover in the epeiric basins of Europe, it paralleled a globally protracted extinction of other higher trophic-level marine reptiles that was not completed until after the earliest-Late Jurassic, ~ 161.5 Ma.

Proportion of dead cells in phytoplankton modulates community structure

The growth and death of phytoplankton are two key processes that affect structure and function of marine ecosystem. However, current understanding is elaborated from the perspective of growth, and relatively little is known about the environment-driven death of phytoplankton. Our study is aimed to elucidate the differences in group-specific proportion of dead cells and their effects on community structure. Based on flow cytometry analysis, the proportion of dead cells among eukaryotic phytoplankton groups was analyzed in the oligotrophic South China Sea. The eukaryotic phytoplankton were divided into five groups (eukaryotic group 1, eukaryotic group 2, eukaryotic group 3, cryptophytes, and eukaryotic group 4) with successively larger cell size from pico to micro. The larger cells (from nano to micro size) had a higher proportion of dead cells and a lower relative abundance. Only the group of large cells showed a complete correspondence between the proportion of dead cells and abundance in the vertical profile. Above the deep chlorophyll maximum layer, death induced by nutrient limitation was apparent in most groups, and the larger the cell size, the greater the limitation. Below the deep chlorophyll maximum layer, all groups were light-limited, but differences in the degree of light limitation among groups were not significant. These results suggested that differences in cell size contribute to some extent to differences in the proportion of dead cells among groups, making the proportion of dead cells important in regulating community structure and thus further influencing the structure and function of pelagic marine ecosystems.

Toward efficient deep learning system for in-situ plankton image recognition

Plankton is critical for the structure and function of marine ecosystems. In the past three decades, various underwater imaging systems have been developed to collect in-situ plankton images and image processing has been a major bottleneck that hinders the deployment of plankton imaging systems. In recent years, deep learning methods have greatly enhanced our ability of processing in-situ plankton images, but high-computational demands and longtime consumption still remain problematic. In this study, we used knowledge distillation as a framework for model compression and improved computing efficiency while maintaining original high accuracy. A novel inter-class similarity distillation algorithm based on feature prototypes was proposed and enabled the student network (small scale) to acquire excellent ability for plankton recognition after being guided by the teacher network (large scale). To identify the suitable teacher network, we compared emerging Transformer neural networks and convolution neural networks (CNNs), and the best performing deep learning model, Swin-B, was selected. Utilizing the proposed knowledge distillation algorithm, the feature extraction ability of Swin-B was transferred to five more lightweight networks, and the results had been evaluated in taxonomic dataset of in-situ plankton images. Subsequently, the chosen lightweight model and the Bilateral–Sobel edge enhancement were tested to process in-situ images with high level of noises captured from coastal waters of Guangdong, China and achieved an overall recall rate of 91.73%. Our work contributes to effective deep learning models and facilitates the deployment of underwater plankton imaging systems by promoting both accuracy and speed in recognition of plankton targets.