Marine Biogeography Research Articles

A potential tool for marine biogeography: eDNA-dominant fish species differ among coastal habitats and by season concordant with gear-based assessments.

Effective ocean management asks for up-to-date knowledge of marine biogeography. Here we compare eDNA and gear-based assessments of marine fish populations using an approach that focuses on the commonest species. The protocol takes advantage of the "hollow curve" of species abundance distributions, with a minority of species comprising the great majority of individuals or biomass. We analyzed new and published teleost eDNA metabarcoding surveys from three neighboring northwest Atlantic coastal locations representing sandy, rocky, or estuary habitat. Fish eDNA followed a hollow curve species abundance distribution at each location-the 10 commonest taxa accounted for more than 90% of eDNA copies. Top ten taxa were designated eDNA-dominant species (eDDS) and categorized as habitat-associated (top 10 in one study) or as shared. eDDS by category were similarly abundant in concurrent bottom trawl and seine surveys. eDDS habitat category profiles correctly classified most (94%-100%) individual eDNA and capture measurements within surveys and recognized estuarine sites in other regional eDNA and seine studies. Using a category metric like that for habitats, eDDS demonstrated strong seasonal turnover concordant with trawl catch weights. eDNA seasonal profiles applied to historical trawl and seine records highlighted known long-term trends in mid-Atlantic fish populations. This study provides evidence that eDNA-abundant fish species differ among coastal habitats and by season consistent with gear-based assessments. Grouping abundant species by category facilitated comparisons among habitats and integration with established surveys. eDNA metabarcoding of dominant fish species potentially offers a useful tool for marine biogeography and ocean monitoring.

Tropical seamounts as stepping-stones for coral reef fishes: range extensions and new regional distributions from mesophotic ecosystems in the Coral Sea, Australia

Seamounts and remote oceanic islands serve as valuable natural laboratories in which to study patterns and processes in marine biodiversity. A central hypothesis arising from studies of these systems is the ecological function of seamounts as stepping-stones for dispersal and population connectivity. Evidence of this mechanism exists for a range of taxa, including coral reef fishes, but is still lacking from many tropical seamounts in remote regions. In this study, we used remotely operated vehicles and baited remote underwater video systems to survey fish and benthic communities between 1 and 100 m on seamounts in the Coral Sea Marine Park (CSMP), Australia. We found evidence to support the stepping-stone model of ecological connectivity from new observations of 16 coral reef fishes which have previously not been recorded by quantitative surveys in the region. The widespread distribution of many of these species throughout the full latitudinal extent of the CSMP suggests that there is greater connectivity between mesophotic habitats in the Coral Sea and surrounding biogeographic regions than previously known. We also found a wide variety of mesophotic habitats and recorded significant depth range extensions for 78 fishes in these habitats. This further highlights the potential role of increased habitat area and heterogeneity in a stepping-stone effect throughout the region. Four of the fish occurrence records represent significant range extensions into the Coral Sea from adjacent biogeographic regions, and 13 fishes recorded by this study in the CSMP are not known from the neighbouring Great Barrier Reef, despite its close proximity. Although the Coral Sea remains relatively understudied, these findings suggest that larger-scale models of marine biogeography are relevant to communities in the region, particularly at mesophotic depths. Given the extent and the spatial arrangement of seamounts in the Coral Sea, our findings emphasise that the region is an important link between the centre of marine biodiversity in the Coral Triangle and the Southwest Pacific. Greater mesophotic sampling effort and genetic studies are necessary to understand the nature of connectivity and to establish the role of regional seamount chains, like the Coral Sea reefs, in broader marine biogeographic processes.

Advances of marine biogeography in China: Species distribution model and its applications

Advances of marine biogeography in China: Species distribution model and its applications

Climate, Oxygen, and the Future of Marine Biodiversity.

The ocean enabled the diversification of life on Earth by adding O2 to the atmosphere, yet marine species remain most subject to O2 limitation. Human industrialization is intensifying the aerobic challenges to marine ecosystems by depleting the ocean's O2 inventory through the global addition of heat and local addition of nutrients. Historical observations reveal an ∼2% decline in upper-ocean O2 and accelerating reports of coastal mass mortality events. The dynamic balance of O2 supply and demand provides a unifying framework for understanding these phenomena across scales from the global ocean to individual organisms. Using this framework, we synthesize recent advances in forecasting O2 loss and its impacts on marine biogeography, biodiversity, and biogeochemistry. We also highlight three outstanding uncertainties: how long-term global climate change intensifies ocean weather events in which simultaneous heat and hypoxia create metabolic storms, how differential species O2 sensitivities alter the structure of ecological communities, and how global O2 loss intersects with coastal eutrophication. Projecting these interacting impacts on future marine ecosystems requires integration of climate dynamics, biogeochemistry, physiology, and ecology, evaluated with an eye on Earth history. Reducing global and local impacts of warming and O2 loss will be essential if humankind is to preserve the health and biodiversity of the future ocean.

Daily accumulation rates of floating debris and attached biota on continental and oceanic island shores in the SE Pacific: testing predictions based on global models.

Long-distance rafting on anthropogenic marine debris (AMD) is thought to have a significant impact on global marine biogeography and the dispersal of non-indigenous species. Therefore, early identification of arrival sites of AMD and its epibionts is crucial for the prioritization of preventive measures. As accumulation patterns along global coastlines are largely unstudied, we tested if existing oceanographic models and knowledge about upstream sources of litter and epibionts can be used as a simple and cost-efficient approach for predicting probable arrival sites of AMD-rafting biota in coastal zones. Using the Southeast Pacific as a model system, we studied daily accumulation rates, composition, and minimum floating times of AMD with and without epibionts on seven sandy beaches, covering the oceanic environment (Rapa Nui/Easter Island) and three regions (south, centre, north) along the Chilean continental coast, over a minimum of 10 consecutive days, and we contrast our results with predictions from published models. Total AMD accumulation rates varied from 56 ± 36 (mean±standard deviation) to 388 ± 433 items km-1 d-1 and differed strongly between regions, in accordance with local geomorphology and socioeconomic conditions (presence of larger cities and rivers upstream, main economic activities, etc.). Daily accumulation of items with pelagic epibionts (indicators of a pelagic trajectory) ranged from 46 ± 29 (Rapa Nui) to 0.0 items km-1 d-1 (northern continental region). Minimum floating times of rafts, as estimated from the size of pelagic epibionts, were longest in the South Pacific Subtropical Gyre's (SPSG) centre region, followed by the high-latitude continental region under the influence of the onshore West Wind Drift, and decreased along the continental alongshore upwelling current, towards lower latitudes. Apart from pelagic rafters, a wide range of benthic epibionts, including invasive and cryptogenic species, was found on rafts at the continental beaches. Similarly, we present another record of local benthic corals Pocillopora sp., on Rapa Nui rafts. Our results agree with the predictions made by recent models based on the prevailing wind and surface current regimes, with high frequencies of long-distance rafting in the oceanic SPSG centre and very low frequencies along the continental coast. These findings confirm the suitability of such models in predicting arrival hotspots of AMD and rafting species. Moreover, storm surges as well as site-related factors seem to influence AMD arrival patterns along the Chilean continental coast and might cause the observed high variability between sampling sites and days. Our results highlight the possible importance of rafting as a vector of along-shore dispersal and range expansions along the SE Pacific continental coast and add to the discussion about its role in benthic species dispersal between South Pacific oceanic islands.

Biogeographic provinces and genomically delineated stocks are congruent in snapper (Chrysophrys auratus) from southeastern Australia

AbstractMarine species often exhibit genetic discontinuities concordant with biogeographic boundaries, frequently occurring due to changes in ocean circulation, bathymetry, coastline topography, and temperature. Here, we used 10 916 single nucleotide polymorphisms (SNPs) to assess the concordance between population genomic differentiation and coastal biogeography in the fishery-important snapper (Chrysophrys auratus) across southeastern Australia. Additionally, we investigated whether spatial scales of assessment and management of snapper align with evidence from population genomics. We detected genomic structure concordant with the region's three biogeographic provinces across snapper from 11 localities (n = 488) between the west coast of South Australia and the south coast of New South Wales. We also detected fine-scale genetic structuring relating to spatial variation in spawning and recruitment dynamics, as well as temporal stability in the genomic signal associated with two important spawning areas. The current management boundaries in the region coincided with either the genetic breaks at bioregional boundaries or with local-scale variation. Our study highlights the value of population genomic surveys in species with high dispersal potential for uncovering stock boundaries and demographic variation related to spawning and recruitment. It also illustrates the importance of marine biogeography in shaping population structure in commercial species with high dispersal potential.

Late Cenozoic cooling restructured global marine plankton communities.

The geographic ranges of marine organisms, including planktonic foraminifera1, diatoms, dinoflagellates2, copepods3 and fish4, are shifting polewards owing to anthropogenic climate change5. However, the extent to which species will move and whether these poleward range shifts represent precursor signals that lead to extinction is unclear6. Understanding the development of marine biodiversity patterns over geological time and the factors that influence them are key to contextualizing these current trends. The fossil record of the macroperforate planktonic foraminifera provides a rich and phylogenetically resolved dataset that provides unique opportunities for understanding marine biogeography dynamics and how species distributions have responded to ancient climate changes. Here we apply a bipartite network approach to quantify group diversity, latitudinal specialization and latitudinal equitability for planktonic foraminifera over the past eight million years using Triton, a recently developed high-resolution global dataset of planktonic foraminiferal occurrences7. The results depict a global, clade-wide shift towards the Equator in ecological and morphological community equitability over the past eight million years in response to temperature changes during the late Cenozoic bipolar ice sheet formation. Collectively, the Triton data indicate the presence of a latitudinal equitability gradient among planktonic foraminiferal functional groups which is coupled to the latitudinal biodiversity gradient only through the geologically recent past (the past two million years). Before this time, latitudinal equitability gradients indicate that higher latitudes promoted community equitability across ecological and morphological groups. Observed range shifts among marine planktonic microorganisms1,2,8 in the recent and geological past suggest substantial poleward expansion of marine communities even under the most conservative future global warming scenarios.

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.

Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth's RNA virus catalogs and their taxonomy, investigate their evolutionary origins, and assess their marine biogeography from pole to pole. Using new approaches to optimize discovery and classification, we identified RNA viruses that necessitate substantive revisions of taxonomy (doubling phyla and adding >50% new classes) and evolutionary understanding. "Species"-rank abundance determination revealed that viruses of the new phyla "Taraviricota," a missing link in early RNA virus evolution, and "Arctiviricota" are widespread and dominant in the oceans. These efforts provide foundational knowledge critical to integrating RNA viruses into ecological and epidemiological models.

Brazilian marine biogeography: a multi-taxa approach for outlining sectorization

Brazilian marine biogeography: a multi-taxa approach for outlining sectorization

The distribution of offshore benthic molluscs provides new insight into South Africa's marine biogeography

South African marine biogeography has received a great deal of attention in the past. However, offshore biogeographic breaks are based on abiotic variables or specialist opinion rather than data-driven approaches. Here we investigate biogeographic breaks based on the distribution of offshore marine benthic molluscs collected during the Natal Museum Dredging Programme (1981–1997) along the coast of South Africa, between the South East Atlantic and South West Indian Oceans. Spatially constrained (depth, latitude and longitude) cluster analyses were applied to three resemblance measures; the Jaccard coefficient, popular in biogeographic studies, and gamma+ and theta+ coefficients, where taxonomic relatedness is considered when comparing sites. We used these resemblances to 1) find the most consistent biogeographic breaks and 2) compare the results of different measures to better understand the patterns and possible processes involved in the biogeographical classification. Although there were differences in the overall results from the three resemblance measures, they produced comparable findings at depths shallower than 80 m. Our data-driven approach indicated that the biogeographic break between the warm-temperate and sub-tropical assemblages was 140 km north of the current inshore break. The break between the sub-tropical and tropical mollusc assemblages agreed more closely with the present Ecoregions. Compared to Jaccard, where relatedness is not considered, gamma+ and theta+ results revealed a more substantial depth effect, and samples collected in the same depth range were more closely related and shared a more recent evolutionary history than geographically close samples from different depths. Furthermore, assemblages found deeper than ∼80 m demonstrated greater diversity in terms of relatedness, an essential consideration in marine spatial planning and consequent designation of protected areas. This study reveals the importance of including in-situ data and interspecies relationships in future marine spatial planning to ensure that these evolutionary rich animal communities are considered adequately.

Comparative seascape genetics of co-distributed intertidal snails Monodonta spp. in the Japanese and Ryukyu archipelagoes

Recent molecular ecological studies have focused on how the relationships between physical and ecological factors influence marine biogeography. Comparative phylogeography using closely related species is a powerful approach to evaluate the role of ecological traits in the genetic variation of marine organisms. In the present study, we compared ecological traits and genetic variation in 3 species of the intertidal snail genusMonodontathat co-occur in the Japanese and Ryukyu archipelagoes. We found thatM. labiowas dominant in sheltered habitats andM. perplexawas dominant in wave-exposed habitats, whileM. confusashowed no habitat specificity. This indicates thatM. labioandM. perplexaarehabitat specialists regarding wave exposure, whileM. confusais a generalist.M. labioandM. perplexashowed lower genetic diversity and greater genetic differentiation among populations thanM. confusa. Our findings support the specialist-generalist variation hypothesis in a well-connected marine environment.

Navigating the southern seas with small fins: Genetic connectivity of seahorses (Hippocampus abdominalis) across the Tasman Sea

AbstractAimHistorical patterns of ocean circulation in the Southern Hemisphere have been well‐studied, but the effects of coastal oceanography on marine biogeography in this region remain poorly understood relative to northern latitudes. Our study investigates historical and contemporary patterns of migration and dispersal across the Tasman Sea.LocationCoastal regions of the Tasman Sea including southeastern Australia, Tasmania and New Zealand.TaxonHippocampus abdominalis, the pot‐bellied seahorse, one of the most broadly distributed seahorse species, and the only seahorse to have successfully colonized New Zealand from Australia across 2,000 km of open ocean.MethodsWe used a multilocus genetic dataset to measure population diversity and differentiation from seahorses across the full species range to investigate contemporary and historical demography, and to reconstruct colonization routes across the Tasman Sea.ResultsGenetic data indicate that seahorses colonized New Zealand from Australia during the previous interglacial‐glacial cycle (12,000–120,000 ybp), and have evolved in relative isolation since the initial establishment event. Contemporary effective population sizes in the newly colonized range are substantially larger than those inferred in Australia, and both appear to be reduced relative to ancestral levels. Australian seahorses are genetically diverse and show high levels of population connectivity, while the distribution of genetic variation in New Zealand suggests an initial colonization of the South Island following by northward migration. Importantly, despite clear evidence that New Zealand seahorses are descendent from Australian ancestors, patterns of contemporary genetic diversity are consistent with trans‐Tasman migration from New Zealand to Australia, suggesting that genetic variation accumulated in the newly colonized range may be contributing to the genetic diversity of Australian seahorses.Main conclusionsDespite a largely independent evolutionary trajectory of seahorses separated by the Tasman Sea, haplotype sharing between populations in Australia and New Zealand suggests that secondary genetic exchange is contributing to the contemporary phylogeography of the species. Patterns of genetic structure in H. abdominalis mirror those found in other rafting species, suggesting that adult dispersal via rafting has been an important vector of marine dispersal in this species.

History of Ecological Sciences, Part 61C: Marine Biogeography, 1690s–1940s

History of Ecological Sciences, Part 61C: Marine Biogeography, 1690s–1940s

Explaining the ocean's richest biodiversity hotspot and global patterns of fish diversity.

For most marine organisms, species richness peaks in the Central Indo-Pacific region and declines longitudinally, a striking pattern that remains poorly understood. Here, we used phylogenetic approaches to address the causes of richness patterns among global marine regions, comparing the relative importance of colonization time, number of colonization events, and diversification rates (speciation minus extinction). We estimated regional richness using distributional data for almost all percomorph fishes (17 435 species total, including approximately 72% of all marine fishes and approximately 33% of all freshwater fishes). The high diversity of the Central Indo-Pacific was explained by its colonization by many lineages 5.3-34 million years ago. These relatively old colonizations allowed more time for richness to build up through in situ diversification compared to other warm-marine regions. Surprisingly, diversification rates were decoupled from marine richness patterns, with clades in low-richness cold-marine habitats having the highest rates. Unlike marine richness, freshwater diversity was largely derived from a few ancient colonizations, coupled with high diversification rates. Our results are congruent with the geological history of the marine tropics, and thus may apply to many other organisms. Beyond marine biogeography, we add to the growing number of cases where colonization and time-for-speciation explain large-scale richness patterns instead of diversification rates.

Navigating noise when comparing satellite and acoustic remote sensing data

Using a novel combination of NASA satellite products and acoustic remote sensing measurements, we aim to examine the link between the surface expression and vertical structure of ocean productivity and biomass in the California Current System. Water column sonar data collected by the National Marine Fisheries Service for fisheries management have been archived at the NOAA National Centers for Environmental Information. These data are used to evaluate the variability of the marine biogeography. To identify patterns of acoustic reflectance of marine organisms, the data must first be free of noise and seafloor acoustic returns. However, removing the variety of noise present has proved to be a challenge due to need for manual tuning, a resource prohibitive step, and the size and complexity of the acoustic data. Collaboration with the University of Colorado’s Earth Lab has led to the development of machine learning models to automatically remove noise from this large dataset. An analysis of the fully automated, semi-manual, and machine learning quality control processes will be presented. The cleaned acoustic data are then compared to the interannual variability of the distribution of surface chlorophyll concentration and temperature from satellite ocean color measurements.

Concordance between genetic diversity and marine biogeography in a highly mobile marine mammal, the Risso's dolphin

AbstractAimThe heterogeneity of the marine environment is thought to be the origin of marine biodiversity, often delineated in marine biogeographical provinces. Cetaceans are highly mobile aquatic mammals, but even those species inhabiting seemingly boundary‐free open waters are found to exhibit degrees of population structure, often attributed to ecological and behavioural factors such as resource specialization and site fidelity. Our aim in this study is to test the hypothesis that a cosmopolitan, resource‐specialist dolphin species, the Risso's dolphin (Grampus griseus) will show an association between genetic diversity and biogeographical provinces.LocationNorth Pacific and North Atlantic Oceans.MethodsWe examined genetic variation at 19 microsatellite loci among 236 samples collected from a range of locations in the North Pacific Ocean, and for a 473 bp mitochondrial DNA control region sequence in 213 samples from the North Pacific and North Atlantic Oceans to assess genetic diversity, population structure and historic population dynamics.ResultsWe found differentiation in the North Pacific primarily among three populations corresponding to the marine biogeographical provinces of the Kuroshio‐Oyashio Current (Sino‐Japanese), California Current (California), and Eastern Tropical Pacific. Analyses using mitochondrial DNA data further reveal that these three populations are genetically different from the populations in the North Atlantic Ocean and Mediterranean Sea, without strong lineage sorting, and that the western North Pacific population experienced a period of population expansion while the Eastern Tropical Pacific population remained stable.Main conclusionsWe find evidence for biogeographical endemism in a highly mobile marine mammal species that nevertheless shows evidence for long‐range dispersion within and to a lesser extent among biogeographical provinces. We conclude that distinct ecological processes promote differentiation, even though this species forages on narrow range of prey species.

A Framework for Understanding Marine Cosmopolitanism in the Anthropocene.

Recent years have witnessed growing appreciation for the ways in which human-mediated species introductions have reshaped marine biogeography. Despite this we have yet to grapple fully with the scale and impact of anthropogenic dispersal in both creating and determining contemporary distributions of marine taxa. In particular, the past several decades of research on marine biological invasions have revealed that broad geographic distributions of coastal marine organisms—historically referred to simply as “cosmopolitanism”—may belie complex interplay of both natural and anthropogenic processes. Here we describe a framework for understanding contemporary cosmopolitanism, informed by a synthesis of the marine bioinvasion literature. Our framework defines several novel categories in an attempt to provide a unified terminology for discussing cosmopolitan distributions in the world’s oceans. We reserve the term eucosmopolitan to refer to those species for which data exist to support a true, natural, and prehistorically global (or extremely broad) distribution. While in the past this has been the default assumption for species observed to exhibit contemporary cosmopolitan distributions, we argue that given recent advances in marine invasion science this assignment should require positive evidence. In contrast, neocosmopolitan describes those species that have demonstrably achieved extensive geographic ranges only through historical anthropogenic dispersal, often facilitated over centuries of human maritime traffic. We discuss the history and human geography underpinning these neocosmopolitan distributions, and illustrate the extent to which these factors may have altered natural biogeographic patterns. We define the category pseudocosmopolitan to encompass taxa for which a broad distribution is determined (typically after molecular investigation) to reflect multiple, sometimes regionally endemic, lineages with uncertain taxonomic status; such species may remain cosmopolitan only so long as taxonomic uncertainty persists, after which they may splinter into multiple geographically restricted species. We discuss the methods employed to identify such species and to resolve both their taxonomic status and their biogeographic histories. We argue that recognizing these different types of cosmopolitanism, and the important role that invasion science has played in understanding them, is critically important for the future study of both historical and modern marine biogeography, ecology, and biodiversity.

Tsunami-driven rafting: Transoceanic species dispersal and implications for marine biogeography.

The 2011 East Japan earthquake generated a massive tsunami that launched an extraordinary transoceanic biological rafting event with no known historical precedent. We document 289 living Japanese coastal marine species from 16 phyla transported over 6 years on objects that traveled thousands of kilometers across the Pacific Ocean to the shores of North America and Hawai'i. Most of this dispersal occurred on nonbiodegradable objects, resulting in the longest documented transoceanic survival and dispersal of coastal species by rafting. Expanding shoreline infrastructure has increased global sources of plastic materials available for biotic colonization and also interacts with climate change-induced storms of increasing severity to eject debris into the oceans. In turn, increased ocean rafting may intensify species invasions.

A second horizon scan of biogeography: Golden Ages, Midas touches, and the Red Queen

Are we entering a new ‘Golden Age’ of biogeography, with continued development of infrastructure and ideas? We highlight recent developments, and the challenges and opportunities they bring, in light of the snapshot provided by the 7th biennial meeting of the International Biogeography Society (IBS 2015). We summarize themes in and across 15 symposia using narrative analysis and word clouds, which we complement with recent publication trends and ‘research fronts’. We find that biogeography is still strongly defined by core sub-disciplines that reflect its origins in botanical, zoological (particularly bird and mammal), and geographic (e.g., island, montane) studies of the 1800s. That core is being enriched by large datasets (e.g. of environmental variables, ‘omics’, species’ occurrences, traits) and new techniques (e.g., advances in genetics, remote sensing, modeling) that promote studies with increasing detail and at increasing scales; disciplinary breadth is being diversified (e.g., by developments in paleobiogeography and microbiology) and integrated through the transfer of approaches and sharing of theory (e.g., spatial modeling and phylogenetics in evolutionary–ecological contexts). Yet some subdisciplines remain on the fringe (e.g., marine biogeography, deep-time paleobiogeography), new horizons and new theory may be overshadowed by popular techniques (e.g., species distribution modelling), and hypotheses, data, and analyses may each be wanting. Trends in publication suggest a shift away from traditional biogeography journals to multidisciplinary or open access journals. Thus, there are currently many opportunities and challenges as biogeography increasingly addresses human impacts on, and stewardship of, the planet (e.g., Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services). As in the past, biogeographers doubtless will continue to be engaged by new data and methods in exploring the nexus between biology and geography for decades into the future. But golden ages come and go, and they need not touch every domain in a discipline nor affect subdisciplines at the same time; moreover, what appears to be a Golden Age may sometimes have an undesirable ‘Midas touch’. Contexts within and outwith biogeography—e.g., methods, knowledge, climate, biodiversity, politics—are continually changing, and at times it can be challenging to establish or maintain relevance. In so many races with the Red Queen, we suggest that biogeography will enjoy greatest success if we also increasingly engage with the epistemology of our discipline.

Marine Molluscan Fauna of Jindo Island

As a part of the commemorative joint faunal survey for the 30th anniversary of the Korean Society of Systematic Zoology, the molluscan fauna of Jindo Island was investigated based on sample collection from 6 localities from the 6 to the 8 of Jul 2016. A total of 114 molluscan species from 47 families were collected and identified. Among these, 42 species from 11 families are newly reported from Jindo Island and combining the previous records with the present study totals 157 species from 57 families. Distribution of species records indicates that marine biogeography of Jindo Island represent an overlapping zone for marine organisms which dwell in the Yellow sea and the southern sea areas of Korean waters.