At the Illinois Basin–Decatur Project, a large-scale CO2 capture and geologic storage demonstration project in the saline Mount Simon Sandstone in central Illinois, three overlying and laterally continuous shale formations (the Eau Claire, Maquoketa, and New Albany) are considered confining units overlying the sandstone reservoir. The Mount Simon reservoir contains internal mudstone baffles that will influence CO2 migration pathways and future interaction with seals. Understanding the sealing properties of rock units deemed seals or confining units is vital to commercialization of geologic carbon storage. For this article, nanoscale-resolution focused ion beam scanning electron microscopy (SEM), mercury injection capillary pressure (MICP), X-ray diffraction (XRD) spectroscopy, and quantitative evaluation of minerals by SEM were used to characterize the controls on the sealing integrity of these seals and reservoir confining units. Results show that porosity and pore size generally decrease with depth, except in the carbonate-rich Maquoketa Shale. The Maquoketa contains the highest pore volume owing to abundant dolomite in the mineral matrix compared with the other mudstone and shale intervals, which are clay rich. The shallowest seal sample, the organic-rich New Albany Shale, contains the highest frequency of the smallest pore throat size and is most comparable, with respect to pore sizes and entry pressures, to the deepest black shale and primary Mount Simon reservoir seal, the Eau Claire. Point-specific MICP threshold pressure results, theoretical calculations based on a range of permeabilities, and column height calculations indicate that the internal Mount Simon mudstone and Eau Claire Shale are effective seals of CO2 in the Mount Simon reservoir.