Soil organic carbon (SOC) is a crucial factor for soil fertility, directly impacting agricultural yields and ensuring food security. In recent years, remote sensing (RS) technology has been highly recommended as an efficient tool for producing SOC maps. The PRISMA hyperspectral satellite was used in this research to predict the SOC map in Fars province, located in southern Iran. The main purpose of this research is to investigate the capabilities of the PRISMA satellite in estimating SOC and examine hyperspectral processing techniques for improving SOC estimation accuracy. To this end, denoising methods and a feature generation strategy have been used. For denoising, three distinct algorithms were employed over the PRISMA image, including Savitzky–Golay + first-order derivative (SG + FOD), VisuShrink, and total variation (TV), and their impact on SOC estimation was compared in four different methods: Method One (reflectance bands without denoising, shown as M#1), Method Two (denoised with SG + FOD, shown as M#2), Method Three (denoised with VisuShrink, shown as M#3), and Method Four (denoised with TV, shown as M#4). Based on the results, the best denoising algorithm was TV (Method Four or M#4), which increased the estimation accuracy by about 27% (from 40% to 67%). After TV, the VisuShrink and SG + FOD algorithms improved the accuracy by about 23% and 18%, respectively. In addition to denoising, a new feature generation strategy was proposed to enhance accuracy further. This strategy comprised two main steps: first, estimating the number of endmembers using the Harsanyi–Farrand–Chang (HFC) algorithm, and second, employing Principal Component Analysis (PCA) and Independent Component Analysis (ICA) transformations to generate high-level features based on the estimated number of endmembers from the HFC algorithm. The feature generation strategy was unfolded in three scenarios to compare the ability of PCA and ICA transformation features: Scenario One (without adding any extra features, shown as S#1), Scenario Two (incorporating PCA features, shown as S#2), and Scenario Three (incorporating ICA features, shown as S#3). Each of these three scenarios was repeated for each denoising method (M#1–4). After feature generation, high-level features were added to the outputs of Methods One, Three, and Four. Subsequently, three machine learning algorithms (LightGBM, GBRT, RF) were employed for SOC modeling. The results showcased the highest accuracy when features obtained from PCA transformation were added to the results from the TV algorithm (Method Four—Scenario Two or M#4–S#2), yielding an R2 of 81.74%. Overall, denoising and feature generation methods significantly enhanced SOC estimation accuracy, escalating it from approximately 40% (M#1–S#1) to 82% (M#4–S#2). This underscores the remarkable potential of hyperspectral sensors in SOC studies.
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