Mangrove Sediments Research Articles

Correction: Isoptericola haloaureus sp. nov., a dimorphic actinobacterium isolated from mangrove sediments of southeast India, implicating biosaline agricultural significance through nitrogen fixation and salt tolerance genes

Correction: Isoptericola haloaureus sp. nov., a dimorphic actinobacterium isolated from mangrove sediments of southeast India, implicating biosaline agricultural significance through nitrogen fixation and salt tolerance genes

Metagenomics approaches in the discovery and development of new bioactive compound of 8-demethoxy-10-deoxysteffimycin from mangrove sediments

Metagenomics approaches in the discovery and development of new bioactive compound of 8-demethoxy-10-deoxysteffimycin from mangrove sediments

Screening, Isolation and Hydrocarbon Degradation Characteristics of Yeasts from Mangrove Sediments of Kerala

The aim of the present work was to examine the hydrocarbon degradation potential of yeasts isolated from the mangrove sediments. Mangrove sediments around the world were considered to be heavily polluted with oil contaminants and the microbes dwelling in them were believed to be highly active in metabolizing and detoxifying the oil fractions. In the present study, 70 yeast isolates were screened for their lipolytic activity qualitatively and 35 of them which showed comparatively higher lipolysis were tested for their crude oil degradation ability. Screening of hydro-carbon utilizing isolates was performed on Bushnell Haas agar media overlaid with 1% crude oil and the appearance of colonies were considered a positive. Three isolates were selected based on this and were sequenced using ITS gene of the 18S region of the rDNA and identified to be Candida tropicalis. The extent of crude oil degradation was assessed by growing the isolates in basal medium supplemented with heavy crude oil as the carbon source for 21 days. The residual crude oil fractions were then analyzed using GC-MS to quantitatively measure the degradation potential of each isolate. Our results showed that the yeast strains under study could actively metabolize the crude oil including the higher chain fractions which make them efficient hydrocarbon degraders that can be used in the bioremediation processes.

How Does Mangrove Restoration or Reforestation Change Trace Metal Pollution in Mangrove Ecosystems? A Review of Current Knowledge

In recent years, mangrove restoration has gained significant attention due to its carbon storage capacity, role as a pollution sink, and ecological and economic benefits. Moreover, the United Nations Sustainable Development Goals’ strategies include mangrove restoration. This review investigates the status of mangrove restoration research and the influence of restoration on trace metal accumulation, speciation, and associated risks in mangrove sediments. Our analysis reveals that research on mangrove restoration is increasing globally, with a notable surge in publications after 2017. However, fewer than 25 articles published between 2007 and 2024 address trace metals in restored mangroves, indicating limited focus from researchers on this topic. Research shows that mangrove restoration can quickly alter sediment properties, such as texture, salinity, and pH. As a result, restored sediments tend to accumulate higher organic carbon content than barren areas. Most studies also suggest that trace metal accumulation is higher in restored sites than in non-restored areas. However, metal speciation varies considerably between sites due to local environmental factors. Furthermore, many studies suggest that restoration may increase the risks posed by trace metals to aquatic biota. The challenges of mangrove restoration research include short study timeframes, low success rates, poorly defined targets, small-scale efforts, conflicts with local communities over resources and benefits, insufficient government funding, and a lack of historical data on community health and pollution status.

Characterization and Bioactive Metabolite Profiling of Streptomyces sp. Y009: A Mangrove-Derived Actinomycetia with Anticancer and Antioxidant Potential

Microorganisms from poorly explored environments are promising sources for the development of novel drugs. In our continuous efforts to screen for mangrove actinomycetes that produce metabolites with potential pharmaceutical applications, Streptomyces sp. Y009 was isolated from mangrove sediments in Guangxi, China. The phenotypic, physiological, biochemical, and phylogenetic characteristics of this strain were investigated. Analysis of phylogenetic and 16S rRNA gene sequences showed that it had the highest sequence similarity to Streptomyces thermolilacinus NBRC 14274 (98.95%). Further, the Y009 extract exhibited antioxidant activity, as indicated by DPPH and superoxide dismutase assays. The extract showed broad-spectrum and potent anticancer potential against six human cancer cell lines, with IC50 values ranging from 5.61 to 72.15 μg/mL. Furthermore, the selectivity index (SI) demonstrated that the Y009 extract exhibited less toxicity toward normal cell lines in comparison to the lung cancer cell line (A549) and hepatoma cell line (HepG2). GC–MS analysis revealed that the extract contained some biologically important secondary metabolites, mainly cyclic dipeptides and esters, which might be responsible for the antioxidant and anticancer properties. 3-Isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione (28.32%) was the major chemical compound available in the extract. The effect on cancer cells was then confirmed using nuclear staining and in silico docking. This study suggests that further exploration of the bioactive compounds of the newly isolated strain may be a promising approach for the development of novel chemopreventive drugs.

Sea-level rise and extreme Indian Ocean Dipole explain mangrove dieback in the Maldives.

Mangrove forests enhance Small Island Developing States' resilience to climate change, yet in 2020, a mangrove dieback impacted ~ 25% of mangrove-containing islands in the Maldives. Using remote sensing, dendrology and sediment geochemistry, we document a significant decrease in mangrove health post-2020 (NDVI: 0.75 ± 0.09) compared to pre-2020 (0.85 ± 0.04; P < 0.0001). Dead trees showed reduced stomatal conductance (δ13C: -26.21 ± 0.11 ‰) relative to living ones (-27.66 ± 0.14 ‰), indicating salinity stress. Critically, sea-level rise (30.50 ± 23.30mm/year) outpaced mangrove sediment accretion (6.40 ± 0.69mm/year) five-fold between 2017 and 2020. We attribute this dieback to salinity stress driven by record-high sea levels in 2020, linked to an extreme positive Indian Ocean Dipole event. These findings reveal the vulnerability of mangrove ecosystems to rapid sea-level rise and highlights the urgent need for adaptive conservation strategies in Small Island Developing States.

Anthropogenic activities affect the diverse autotrophic communities of coastal sediments

Coastal sediments are a critical domain for carbon sequestration and are profoundly impacted by human activities. Therefore, it is essential to understand the structure and components of benthic autotrophs that play a crucial role in carbon sequestration processes, as well as the influence of anthropogenic activities on their communities. This study utilized an urban estuary, an industrial sea bay, a maricultural sea region, and two mangrove coastlines within the coastal areas of Guangdong Province, China. The micro-benthos in these environments, including prokaryotes and eukaryotes, were identified through high-throughput sequencing of 16S rRNA and 18S rRNA genes. The findings show that the autotrophic composition was altered by the interactions of anthropogenic heavy metals (Cd and Zn) and micro-eukaryotes (protazoa, metazoa, and parasitic organisms). Industrial pollution reduced the abundance of both prokaryotic and eukaryotic autotrophs. Mangroves induced a substantial transformation in the sediment eukaryotic and prokaryotic composition, increasing the proportion of autotrophs, notably sulfur-oxidizing and iron-oxidizing bacteria and microalgae. This alteration suggests an increase in specific sulfur and iron cycling with simultaneous carbon sequestration within mangrove sediments. These results indicate that anthropogenic activities affect sediment carbon sequestration by altering autotrophic assemblages along coastlines, thereby inducing consequential shifts in overall elemental cycling processes.

Efficient low-temperature wastewater treatment by Pseudomonas zhanjiangensis sp. nov.: a novel cold-tolerant bacterium isolated from mangrove sediment.

A novel heterotrophic, cold-tolerant bacterium, designated Pseudomonas zhanjiangensis 25A3ET, was isolated from mangrove sediment and demonstrated excellent efficiency in cold wastewater treatment. Phylogenetic analysis based on 16S rRNA gene sequences positioned strain 25A3ET within the genus Pseudomonas, showing the highest similarity (98.7%) with Pseudomonas kurunegalensis LMG 32023T. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values were below the species delineation thresholds (70% for dDDH, 95% for ANI), indicating that strain 25A3ET represents a novel species. This strain demonstrated high efficiency in removing nitrogen (N) and organic pollutants under low-temperature conditions. Specifically, it achieved 72.9% removal of chemical oxygen demand (COD), 70.6% removal of ammoniacal nitrogen (NH4 +-N), and 69.1% removal of total nitrogen (TN) after 96 h at 10°C. Genomic analysis identified key genes associated with cold adaptation, nitrogen removal and organic matter degradation. These findings indicate that Pseudomonas zhanjiangensis 25A3ET holds significant potential for application in cold temperature wastewater treatment, offering a promising solution for environmental remediation in regions with low ambient temperatures.

Fluxes of carbon dioxide gases (CO2) in the mangrove soil of Passo Village, Ambon City

Mangrove ecosystems play a significant role in carbon absorption. However, the accumulation of organic matter in mangrove sediments undergoes decomposition, which triggers the release of CO2 gas flux. This study aimed to analyze the CO2 gas flux in mangrove sediments of Negeri Passo, Ambon City. Gas data collection was performed using cylinder canopies at the three observation stations. Gas was passed through the syringe five times with an interval of 30s. Gas concentration analysis was carried out using the gas chromatography method, while CO2 flux was analyzed with flux equations referring to slope regression, volume and area of the scope, temperature, molecular weight of the gas, ideal gas settings, and time constants based on gas intake intervals. The results showed that the average CO2 concentration in St. 1 was 465.14 ± 96.52 ppm, and was the lowest compared to St. 2 and St. 3 with values of 638.60 ± 90.05 ppm and 630.98 ± 54.09 ppm, respectively. Meanwhile, the average CO2 flux was 50.44 mg/m2/hour. The largest CO2 gas flux was observed at St. 2 at 103.69 mg/m2/hour. Meanwhile, the lowest flux was found at St. 3, which was 16.24 mg/m2/hour. Based on this, it can be concluded that] the mangrove ecosystem in Negeri Passo has a higher concentration of CO2 gas than the average concentration of climate change stabilization scenarios. However, the CO2 flux was lower than that at other locations in the Ambon Dalam Bay area. In addition, the potential for significant carbon sequestration based on the Tier 1 model approach indicated that mangrove ecosystems in this location play an important role in climate change mitigation.

Characterization of alkaline protease enzyme produced from marine yeast Candida orthopsilosis AKB-1 and its applications.

The present study has undertaken the isolation of marine yeasts from mangrove sediment samples and their ability to produce alkaline protease enzymes. A total of 14 yeast isolates were recovered on yeast-malt agar (YMA) and yeast extract peptone dextrose (YEPD) agar medium. After screening for proteolytic activity on skim milk agar, marine yeast isolate, AKB-1 exhibited a hydrolysis zone of 18mm. Optimal conditions for the enzyme production from yeast isolate AKB-1 were at 30°C, pH 8, fructose as carbon source, potassium nitrate as nitrogen source, and 25% saline concentration. Under the optimal conditions, the protease enzyme activity of the isolate AKB-1 was observed to be 978IU/mL. The structural and functional analysis was carried out through FTIR and HPLC analysis for the extracted protease enzyme. Furthermore, the enzyme produced was partially purified by solvent extraction using ethyl acetate and ammonium sulfate precipitation (3.4-fold) followed by dialysis (56.8-fold). The molecular weight of the purified enzyme was observed to be around 60kDa using SDS-PAGE. The extracted protein showed good antibacterial activity against six different clinical bacterial pathogens and the highest against Bacillus cereus (16 ± 0.5mm). The extracted protease enzyme was revealed to remove blood stains from cloth within 20min of application similar to the commercial detergent. The marine yeast isolate was further identified as Candida orthopsilosis AKB-1 (Accession number KY348766) through 18S rRNA sequencing, and a phylogenetic tree was generated.

Sargassum beaching on mangrove sediments shifts microbial and crab metabolisms and enhances blue carbon storage

AbstractBenthic metabolism and net carbon accumulation in mangroves sediments strongly depend on the quantity and quality of organic matter (OM) supplied, including material brought by coastal waters such as the macroalgae Sargassum spp. Mesocosms were used to assess the effect of eutrophication by Sargassum on mangrove sediments. The concentration of fatty acids (FAs), organic carbon and its carbon isotopic signature, and the sediments–air CO2 fluxes were used to follow the evolution of sedimentary OM in surface and subsurface sediments for 60 d. Sargassum beaching shifted microbial and crab metabolism, leading to a preferential degradation of the labile fraction of OM from both Sargassum (δ13C = −17.7‰ and high concentration of essential FAs) and mangrove leaves (δ13C: −28.9‰ and high concentrations of 18:2ω6 and 18:3ω3). Fatty acids composition of crabs hepatopancreas revealed they preferentially fed on Sargassum and these invertebrates also increased the particulate OM tidal export. In addition, microbial activity at the sediment surface was enhanced, as revealed by strong production of branched FAs and higher CO2 fluxes in mesocosms containing Sargassum. However, Sargassum beaching also increased the transfer and preservation of more refractory OM from mangrove leaves found in higher quantity in subsurface sediments (6–8 cm) after 60 d. Inputs of macroalgae induced a negative priming effect and enhanced the preservation of blue carbon in the sediments. This negative priming effect was enhanced by crab activities. These biotic interactions that include microbial communities apparently make mangrove efficient in storing carbon in a context of growing eutrophication of the tropical ocean.

Metal contamination in mangrove tissues, seeds, and associated sediments from the Vattanam mangrove forest of Palk Bay, southeastern India: An ecological risk assessment

In the present work, the concentrations of toxic heavy metals in mangrove sediments, mangrove leaves, and seeds collected from five stations in the Vattanam mangrove of Palk Bay, southeastern India, as well as the effects of the monsoon season on toxic heavy metals concentrations were determined. The concentrations were 17.5 μg/g for zinc (Zn), 9.11 μg/g for copper (Cu), and 6.03 μg/g for lead (Pb) in sediments; 10.71 μg/g (Zn) and 8.94 μg/g (Cu) in mangrove leaves; and 26.24 μg/g (Zn) and 17.01 μg/g (Cu) in mangrove seeds. At all sampling stations, the Cd concentration was below the limit of detection. These mangroves seem to have adapted successfully to their environment given their selective intake of only essential metals (Cu and Zn) and the restricted movement of non-essential metals (Cd and Pb). The concentrations of metals were below the maximum residual limits regulated by national and international standard limits.

A global assessment of mangrove soil organic carbon sources and implications for blue carbon credit.

Mangroves can retain both autochthonous and allochthonous marine and/or terrestrial organic carbon (OC) in sediments. Accurate quantification of these OC sources is essential for the proper allocation of blue C credits. Here, we conduct a global-scale analysis of sediments autochthonous and allochthonous OC contributions in estuarine and marine mangroves using stable isotopes. Globally, mangrove-derived autochthonous OC was the main contributor to estuarine and marine mangrove top-meter soil organic carbon (SOC) (49% and 62%, respectively). Less marine allochthonous OC (21%) was deposited than terrestrial allochthonous OC (30%) in estuarine mangrove sediments. Estuarine mangroves accumulated more SOC in sediments than marine mangroves (282 ± 8.1 Mg C ha-1 and 250 ± 5.0 Mg C ha-1, respectively), primarily due to the additional terrestrial OC inputs. Globally, marine mangroves held 67% of the total mangrove SOC, reaching 3025 ± 345 Tg C, while 1502 ± 154 Tg C was stored in estuarine mangrove sediments. The findings emphasize the substantial influence of coastal environmental settings on OC contributions, underlining the necessity of accurate OC source quantification for the effective allocation of blue carbon credits.

Isolation and Identification of Four Strains of Bacteria with Potential to Biodegrade Polyethylene and Polypropylene from Mangrove.

With the rapid growth of global plastic production, the degradation of microplastics (MPs) has received widespread attention, and the search for efficient biodegradation pathways has become a hot topic. The aim of this study was to screen mangrove sediment and surface water for bacteria capable of degrading polyethylene (PE) and polypropylene (PP) MPs. In this study, two strains of PE-degrading bacteria and two strains of PP-degrading candidate bacteria were obtained from mangrove, named Pseudomonas sp. strain GIA7, Bacillus cereus strain GIA17, Acinetobacter sp. strain GIB8, and Bacillus cereus strain GIB10. The results showed that the degradation rate of the bacteria increased gradually with the increase in degradation time for 60 days. Most of the MP-degrading bacteria had higher degradation rates in the presence of weak acid. The appropriate addition of Mg2+ and K+ was favorable to improve the degradation rate of MPs. Interestingly, high salt concentration inhibited the biodegradation of MPs. Results of scanning electron microscopy (SEM), atomic force microscopy (AFM), and Fourier-transform infrared spectroscopy (FTIR) indicated the degradation and surface changes of PP and PE MPs caused by candidate bacteria, which may depend on the biodegradation-related enzymes laccase and lipase. Our results indicated that these four bacterial strains may contribute to the biodegradation of MPs in the mangrove environment.

Stand age-related effects of mangrove on archaeal methanogenesis in sediments: Community assembly and co-occurrence patterns

Mangrove sediment is a key source of methane emissions; however, archaea community structure dynamics and methanogenesis activities during long-term mangrove restoration remain unclear. In this study, microcosm incubations revealed a substantial reduction in microbial-mediated methane production potential from mangrove sediments with increasing stand age; methane production rates decreased from 0.42 ng g−1 d−1 in 6-year-old stands to 0.23 ng g−1 d−1 in 64-year-old stands. High-throughput sequencing revealed a reduction in community diversity because of specific microorganism colonization and species loss, notably a decline in the relative abundance of Bathyarchaeia in sediments of 64-year-old stands. In addition, mangrove sediments, especially those in older stands (20- and 64-year-old), had more complex and stable co-occurrence microbial networks than mudflats. Furthermore, archaea community assembly in older stands was dominated by stochastic processes wherein dispersal limitation was prominent, and that in younger stands (6- and 12-year-old) was driven by deterministic processes. The proportion of dispersal limitation of Bathyarchaeia and traditional methanogens in sediment decreased with an increase in stand age. Quantitative polymerase chain reaction analysis confirmed a decrease in Bathyarchaeia (from 3.50 to 0.54 copies g−1) and mcrA gene (from 3.83 to 0.25 copies g−1) abundance in mangrove sediments with an increase in stand age. These findings demonstrate the critical role of Bathyarchaeia in methanogenesis; the decline in microbial interactions and abundance, and the reduced proportion of dispersal limitation of Bathyarchaeia and traditional methanogens collectively contributed to the mitigation of microbial-mediated methane production potential in older mangrove stands.

Genome sequence of Sulfurimonas sp. C5, a potential chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a mangrove sediment.

Sulfurimonas sp. strain C5 (MCCC 1A19556) is a strain with potential chemolithoautotrophic sulfur-oxidizing function, which is isolated from a mangrove sediment sample collected from Quanzhou Bay, Fujian Province, China. This report describes the genome sequence of strain C5, which possesses the gene sets for the sulfur-oxidizing pathway.

Tidal control on aerobic methane oxidation and mitigation of methane emissions from coastal mangrove sediments

Mangrove forests represent important sources of methane, partly thwarting their ecosystem function as an efficient atmospheric carbon dioxide sink. Many studies have focused on the spatial and temporal variability of methane emissions from mangrove ecosystems, yet little is known about the microbial and physical controls on the release of biogenic methane from tidally influenced mangrove sediments. Here, we show that aerobic methane oxidation is a key microbial process that effectively reduces methane emissions from mangrove sediments. We further demonstrate clear links between the tidal cycle and fluctuations in methane fluxes, with contrasting methane emission rates under different tidal amplitudes. Our data suggest that both the microbial methane oxidation activity and pressure-induced advective transport modulated methane fluxes in the mangrove sediments. Methane oxidation activity is limited by the availability of oxygen in the surface sediments, which in turn is controlled by tidal dynamics, further highlighting the interactive physico-biogeochemical controls on biological methane fluxes. Although we found some molecular evidence for anaerobic methanotrophs in the deeper sediments, anaerobic methane oxidation seems to play only a minor role in the mangrove sediments, with potential rates being two orders of magnitude lower than those of aerobic methane oxidation. Our findings confirmed the importance of surface sediments as biological barrier for methane. Specifically, when sediments were exposed to the air, methane consumption increased by ∼227%, and the methane flux was reduced by ∼62%, compared to inundated conditions. Our data demonstrate how tides can orchestrate the daily rhythm of methane consumption and production within mangrove sediments, thus explaining the temporal variability of methane emissions in the tidally influenced coastal mangrove systems.

Hydrodynamic Analysis of Sediment Deposition in Mangrove Wetlands of Zhanjiang Bay-Based on the Perspective of Sediment Grain Size

Grain size is an important parameter reflecting the characteristics of sedimentary dynamics, and mangrove wetland sediments record abundant sedimentary environmental information during transportation and deposition. To investigate the vertical characteristics of sediment grain size and sedimentary dynamic processes in the mangrove wetlands of Zhanjiang Bay, this study analyzed the grain size parameters, frequency distribution curves, and hydrodynamic characteristics of sediment cores collected from the mangrove wetlands in Nansan Island (A), the south of Techeng Island (B), Guanhai Promenade (C), Dongtoushan Island (D), Huguang Town (E), and the west of Donghai Island (F). The objective was to reveal the evolution of sedimentary dynamics in Zhanjiang Bay over the past century. The results showed that: (1) There were significant differences in the grain size characteristics among the sediment cores. Cores A and B had poor sorting and flat kurtosis, with sediment types of silty sand. Core C had a sinuous mean grain size and kurtosis curve, poor sorting, positive skewness, and a sediment type of silty sand. Core D had negative skewness, poor sorting, and moderate kurtosis, with a sediment type of sandy silt. Cores E and F had negative skewness, poor sorting, and large variations in kurtosis, with sediment types of sandy silt; (2) The grain size frequency distribution curves at depths of 25 cm, 50 cm, 75 cm, and 100 cm in each sediment core exhibited bimodal and unimodal characteristics, indicating the involvement of multiple sedimentary media in the depositional process. Cores A, B, C, and D had grain sizes concentrated on the sandy particle end, indicating strong sedimentary dynamics. Cores E and F had prominent silt-sized grains, indicating weaker sedimentary dynamics; (3) The grain size characteristics of the sediments were related to their terrestrial or island origins and the sediment supply from runoff. The depositional processes were deeply influenced by tidal dynamics, mangrove distribution, and human activities. The accelerated deposition rate in Zhanjiang Bay in recent years may affect navigation channels, and thus, attention should be paid to the ecological environment of wetlands within the bay.

The Oldest Holocene Caribbean Mangroves and Postglacial Sea Level Rise: Biogeographical Implications

This commentary underscores the importance of the recent discovery of the oldest in situ Holocene mangrove sediments found to date in the Caribbean region. It also emphasizes the implications of this finding for understanding postglacial sea level rise and the subsequent recolonization of current Caribbean coasts by mangrove communities. These communities likely survived the last glaciation in small microrefugia located beyond the present continental shelf, from where they expanded to form the present-day mangrove biogeographical patterns.

Carbon stocks in mangrove ecosystems of Sri Lanka: Average contributions and determinants of sequestration potential

Mangroves are crucial in carbon sequestration despite covering only a small percentage of the Earth's surface. Latitudinal gradient primarily determines the distribution of climatic zones of distinct sunlight, temperature, and precipitation patterns, which influence the community structure of the mangrove ecosystem. The tropical climate of Sri Lanka contributes to the island's lush mangrove forests. The present study estimated that the average island's carbon sequestration capacity of Sri Lankan mangrove ecosystems is 524.25 t/ha representing a substantial volume of carbon storage that contributes to offset greenhouse effect due to increasing atmospheric CO2. Our results substantiated that rainfall positively influences total carbon sequestration capacity of mangrove ecosystems.It was also revealed that a positive relationship exists between vegetation structural complexity and sediment organic carbon, highlighting the influence of vegetation structure, that is primarily dependent on climatic conditions, on production of organic matter and sediment carbon sequestration. Globally, the carbon sink function of mangrove ecosystems is reported to be highest in the tropical areas and it declines towards sub-tropical higher latitudes while those in the southern hemisphere perform better carbon sinks than those in the northern hemisphere.The vertical distribution of total organic matter content in mangrove sediments was revealed to be in a descending order, manifesting the weak tidal removal of surface organic matter under the microtidal conditions in Sri Lankan marine waters, thus qualifying mangrove ecosystems in microtidal coasts as effective carbon sinks.