Use of anticoagulation in infective endocarditis (IE) remains controversial. Although it may arrest the growth of valve vegetations, it may also increase mortality from neurologic complications associated with major embolic events, and as stroke is a frequent complication of infective endocarditis, especially infection involving left-sided valves. Management of anticoagulation in left-sided infective endocarditis is still a matter of debate, as it is unclear whether anticoagulation impacts stroke and bleeding risk in patients with this condition. The objective of this study was to evaluate the effect of anticoagulation on stroke occurrence and bleeding complications as well as prognosis and mortality in patients with left-sided infective endocarditis. A retrospective medical record review of patients admitted to a tertiary hospital for IE according to modified DUKE criteria, between July 2017, and July, 2022. Patients were stratified based on receipt of therapeutic anticoagulation for various indications (prosthetic valve, DVT, PE or AF) prior to admission versus patients not receiving therapy at the time of IE. The primary and secondary outcomes evaluated the incidence of embolic phenomenon and bleeding events in each group, respectively and mortality. SPSS was used for statistical data analysis. One hundred and eight consecutive patients with left-sided infective endocarditis were identified. Patients receiving anticoagulation (n = 20) were older (mean age 46 vs. 40; P = 0.02), were more likely to have a history of atrial fibrillation (30% vs. 11%; P .01), more often had prosthetic valves (50% vs. 2%; P = 0.01), and had a lower incidence of aortic valve involvement (9.5% vs. 38%; P = 0.01), compared with patients not receiving anticoagulation. The use of vitamin K antagonists was counted for 52% of anticoagulated patients. There was no significant difference in the rate of in-hospital mortality (9.5% vs. 16%; P = 0.6) stroke (5% vs. 10%; P = 0.3), cerebrovascular hemorrhage (4.8% vs. 3.4%; P = 0.7), between the two cohorts. Preexisting anticoagulation did not appear to have an effect on stroke, cerebrovascular hemorrhage, or in-hospital mortality in patients with left-sided infective endocarditis. Hence, our study support the pursuing of anticoagulation in patients with a preexisting indication in patients with left-sided infective endocarditis in the absence of other contraindications.