Main Channel Habitats Research Articles

Optimizing data quantity and quality for side-looking echosounder surveys in large rivers

The increased use of side-looking echosounder surveys in large rivers necessitates the creation and evaluation of standardized sampling protocols to effectively sample these habitats. Using data from five Ohio River pools, we evaluated the effects of habitat and transect direction on the quality and quantity of mobile, side-looking, split-beam echosounder data to determine how these factors may affect survey design in large rivers. Split beam echosounder data were collected using two multiplexing 200 kHz transducers offset in angle to maximize water column coverage. Using mixed-effects models, we evaluated the effects of habitat (main channel vs. tributary) and transect direction (upstream vs. downstream movement of the vessel) on fish density and the number of targets per fish track (series of acoustic targets from an individual fish). We also used a skewness test in conjunction with a Kolmogorov-Smirnov test to determine the distribution of fish orientations relative to the transducer and examine differences in the distribution of fish orientations among habitats, transect directions, and years. Mean fish densities were greater in tributary habitat relative to main channel habitat, whereas main channel habitat had a higher mean number of targets per fish track when compared to tributaries. Upstream-facing transects had greater mean fish density estimates and mean number of targets per fish track than downstream-facing transects. Although most fish were oriented perpendicular to the transducer, we identified habitat, transect direction, and annual differences in the distribution of fish orientations. These results suggest that researchers and managers that plan to use side-looking echosounders to assess fish populations in large rivers should ensure that standardized protocols include main channel and tributaries, and are expanded to encompass other relevant habitats (e.g., backwaters and side channels). Further, managers should use fish orientation data to select or develop TS-L equations that best matches the fish orientation distribution of each survey to ensure accurate density and size estimates.

Movement behavior of a threatened native fish informs flow management in a modified floodplain river system

AbstractMovement is a key driver of the distribution of animals and the structure of populations, communities, and ecosystems. Habitat loss and fragmentation can compromise movement and contribute to population declines. However, there is often insufficient knowledge about when, why, and where animals move, particularly in highly modified environments. We present results from an 8‐year study on the movement behavior of Murray cod Maccullochella peelii, an Australian freshwater fish species that has undergone major declines due in part to river flow regulations. We studied movement within and between different habitat types in a highly modified floodplain ecosystem in the lower Murray River to (1) identify the key environmental conditions associated with movement, (2) examine how a new regulating structure can be managed to influence movement behavior, and (3) explore movement mediated recovery following a hypoxic event. Movement within and between an anabranch and main river channel habitats increased during the core spawning period and during elevated discharge. The likelihood of Murray cod moving to an anabranch system from the Murray River declined substantially following construction of a new flow regulating structure (a weir and vertical slot fishway). Managed flows delivered through the anabranch after regulator construction in accordance with targeted recommendations (time‐of‐year and magnitude of discharge) increased the movement of adult fish within and between habitats. Finally, a hypoxic event caused not only high mortality but also resulted in a high proportion of fish migrating outside of the study reach, before returning to the system over several years. These results demonstrate how flow management can help a keystone species access habitats required to complete critical life history requirements including recovery from disturbance events. Importantly, the work provides an example of how timely and robust applied research has informed a major intervention program aimed at enhancing ecological outcomes.

Towards improving an Area of Concern: Main-channel habitat rehabilitation priorities for the Maumee River

The Maumee River watershed in the Laurentian Great Lakes Basin has been impacted by decades of pollution and habitat modification due to human settlement and development. As such, the lower 35 km of the Maumee River and several smaller adjacent watersheds comprising over 2000 km2 were designated the Maumee Area of Concern (AOC) under the revised Great Lakes Water Quality Agreement in 1987. As part of pre-rehabilitation assessments in the Maumee AOC, we assessed fish and invertebrate communities in river km 24–11 of the Maumee River to identify: 1) areas that exhibit the highest biodiversity, 2) habitat characteristics associated with high biodiversity areas, 3) areas in need of protection from further degradation, and 4) areas that could feasibly be rehabilitated to increase biodiversity. Based on benthic trawl data, shallow water habitats surrounding large island complexes had the highest fish diversity and catch per unit effort (CPUE). Electrofishing displayed similar fish diversity and CPUE patterns across habitat types early in the study but yielded no discernable fish diversity or CPUE patterns towards the end of our study. Although highly variable among study sites, macroinvertebrate density was greatest in shallow water habitats <2.5 m and around large island complexes. Our results provide valuable baseline data that could act as a foundation for developing rehabilitation strategies in the lower Maumee River and for assessing the effectiveness of future aquatic habitat rehabilitation projects. In addition to increasing in-channel habitat, watershed-scale improvements of water quality might be necessary to ensure rehabilitation strategies are successful.

Microhabitat use by pre‐spawning Pacific lamprey Entosphenus tridentatus in a large, regulated river differs by year, river segment, and availability

Decreasing river flows and increasing water temperatures during the summer have been associated with holding behavior by pre-spawning Pacific lamprey Entosphenus tridentatus in the mainstem Willamette River (Oregon, USA). However, it is unclear if microhabitat use (≤ 2 m) by these lamprey is associated with particular habitat structure(s) or thermal refuge. We implanted radio tags into lamprey (n = 425) and conducted boat surveys to track individuals and document their microhabitat use in the mainstem Willamette River. 58 % of the lamprey were detected, representing 460 detections of 247 individuals across two years (2009 and 2010). Lamprey distributed significantly further upstream, and more were found in the main channel during a high flow year (2010) in comparison with a low flow year (2009). More lamprey held in the main channel across all river segments in 2010 than in 2009. Main channel habitats were significantly deeper than other microhabitats. Lamprey migrating into the upper river segment tended to use microhabitats other than the main channel. These other microhabitats included rock revetments and boulders/bedrock. Rock revetments were more prevalent in the middle – upper river segments, and a greater percentage of lamprey were associated with this microhabitat in these segments. The further upstream the lamprey migrated, the cooler, shallower, and faster water they encountered. One lamprey was associated with coolwater refuge (15.5 oC) in an alcove to the mainstem river (18.1 oC). We conclude that microhabitat use by pre-spawning Pacific lamprey differs by year (river flow), river segment, and availability in a large, regulated river.

Bluegill Habitat Use in the Upper Mississippi River

Anthropogenic modifications to the environment have had damaging effects on the wildlife that depend on those natural ecosystems. Specific to Upper Mississippi River fishes, channelization, dams, and loss of floodplain connectivity have all been purported as deleterious. In the face of these habitat modifications, understanding habitat requirements of native species is needed to help guide management and restoration efforts. Furthermore, bluegill (Lepomis macrochirus) are an important indicator species that may provide insight to habitat needs of the broader fish community (e.g., “canary in a coal mine”). Prior research suggests bluegill require a mosaic of habitats throughout all life stages (e.g., main channel to backwater connection). As such, the objective of this study was to identify the habitat needs of bluegill in the Upper Mississippi River. We evaluated bluegill habitat use via electrofishing conducted by the U.S. Army Corps of Engineers’ Long-Term Resource Monitoring (LTRM) element. Electrofishing events (n = 4868) were conducted at three field sites throughout the Upper Mississippi River from 1993 to 2017. Our analysis of catch data (n = 83,352) indicates that bluegill prefer backwater macrohabitat over main channel and side channel habitats. Bluegill abundance varied between microhabitat characteristics. Bluegill catch rates were highest in low-flow areas, with velocities ranging from 0 to 0.09 m/sec. In general, catch rates were highest across all pools in moderately shallow depths (0–1.5 m) and in silty substrates. Management efforts that focus on the preservation of backwater habitat and connectivity to the main channel should help to sustain bluegill populations in the Upper Mississippi River. The information garnered in this study can be used to help direct management efforts that not only favor bluegill, but also other members of the Upper Mississippi River fish community.

Extreme drought causes fish recruitment failure in a fragmented Great Plains riverscape

AbstractDryland stream fishes are adapted to highly connected habitats with unpredictable hydrologic conditions, including frequent low flows and sometimes extreme drought. The low flow recruitment hypothesis predicts that some fishes spawn in main channel habitats during low flows when water temperatures and prey densities are high. However, extreme low flows during drought periods might be disruptive even among fishes whose life histories otherwise benefit from lower flows. We studied recruitment dynamics of six fishes (family Cyprinidae) at 15 sites in a fragmented Great Plains riverscape in Kansas, USA, during 2 years of extreme drought. We tracked the chronology of gonadal development and age 0 recruitment to test the hypothesis that recruitment by fishes that broadcast spawn planktonic ova would be less successful compared with fishes that spawn demersal or adhesive ova. We found all six taxa were reproductively active but recruitment was evident for only four. The two species for which recruitment was not evident, peppered chub (Macrhybopsis tetranema) and silver chub (Macrhybopsis storeriana), are confirmed or suspected pelagic‐broadcast spawning fishes that have declined in other fragmented and dewatered Great Plains riverscapes. Our data highlight the potential for extreme low flows within isolated stream fragments to cause complete or near‐complete recruitment failure for pelagic‐broadcast spawning fishes, especially those with small population sizes. Failed recruitment during extreme drought may be related to spawning mode, ova characteristics, or both. Our work informs management of fish diversity in drought‐prone riverscapes by establishing mechanistic linkages among extreme drought, fish recruitment, and assemblage structure.

Effects of the 2011 Missouri River flood on walleye natal recruitment and habitat use in Lake Sharpe, South Dakota

Floods affect fish populations in the short term (e.g. entrainment, mortality) and long term (e.g. recruitment, habitat availability), but oftentimes long-term effects are overlooked. In 2011, a catastrophic flood with record peak flows (4,200 m3/s) occurred in Lake Sharpe, a mainstem Missouri River reservoir. The flood’s immediate impacts on the Lake Sharpe walleye (Sander vitreus) population have been documented, but long-term effects on natal recruitment and habitat use have not been assessed. We used otolith chemistry to evaluate spatial patterns in walleye natal recruitment and late-summer (i.e. July − September) habitat use in years before, during, and after the flood to gain insight into long-term flood impacts on the Lake Sharpe walleye population. From 2004 to 2013, all walleye hatched in embayments and main channel habitats as opposed to stilling basins or tributaries, and the majority of age ≥ 1 fish (i.e. age-1 or older) used the former habitats in late summer. During the flood year, natal recruitment remained stable relative to pre-flood levels in embayments (26% pre-flood, 20% during flood) and main channels (74% pre-flood, 80% during flood). Habitat use of age ≥ 1 walleye was generally unaltered by the flood as it remained consistent in embayments and main channel habitats before, during, and after the disturbance. Hence, the Lake Sharpe walleye population was largely unaffected by the flood in terms of natal recruitment and habitat use. Our results highlight the resilience of the Lake Sharpe walleye population to a catastrophic flood, providing fisheries professionals with an otolith chemistry approach for quantifying flood effects on natal recruitment and habitat use and developing spatially informed management approaches (e.g. habitat protection/rehabilitation, harvest regulations).

Seasonal changes in habitat suitability for adult shovelnose sturgeon in the lower Mississippi River

Shovelnose sturgeon Scaphirhynchus platorynchus are a large-river fish distributed throughout the Mississippi River basin, including the lower 1,533 km of the Mississippi River where riverine habitat has been and continues to be modified for navigation and is a potential site for development of instream hydrokinetic electric power generation. Information about habitat use and preference is essential to future conservation efforts. Shovelnose sturgeon have previously been found to select particular habitat types, and these selected habitats vary seasonally; although these past analyses do not consider the selected habitats in a landscape context. We used ecological niche factor analysis (ENFA) that uses distributions of telemetry locations and environmental variables to model habitat suitability in a landscape context. We recorded 333 locations of shovelnose sturgeon during July–December 2013 that included periods of relatively high and low river stages. The ENFA analysis indicated high-suitability locations were in or near deep water during both high and low river stages. During high river stages, high-suitability locations were near island tip habitat, deep water, and steep bottom slope and far from main channel habitat. During low stages, high-suitability locations were in or near deep water and main channel habitat and far from secondary channel and wing dike habitats. This landscape-scale analysis supports seasonal shifts in habitat use and provides insights that can be used to inform habitat conservation and management to benefit shovelnose sturgeon in the lower Mississippi River and possibly other large rivers.

Age‐0 blue catfish habitat use and population demographics in the middle Mississippi River

AbstractThe demographics (e.g. hatch time, growth and mortality) and habitat (macrohabitat and mesohabitat) use of age‐0 blue catfish Ictalurus furcatus (Lesueur) were evaluated in the un‐impounded reach of the middle Mississippi River during 2003–2010. Each year, island complexes and adjacent main river habitats were trawled, and 7,373 age‐0 blue catfish (10–144 mm total length) were collected. Blue catfish hatch timing varied slightly across years and generally began in June and ended in August. Age‐0 blue catfish growth rates and instantaneous mortality rates differed among years. Catch rates of age‐0 blue catfish were highest in side channels and around islands, whereas main channel habitats were infrequently occupied. Regarding mesohabitat use, age‐0 blue catfish frequently occupied low velocity areas (i.e. 0.3–0.4 m/s) of shallow depth (i.e. 1–4 m) and sand substratum. This study has provided insight into age‐0 blue catfish population dynamics and has highlighted the importance of specific habitat characteristics in large rivers that may aid in recruitment of this species.

Do Alluvial Sand Dunes Create Energetic Refugia for Benthic Fishes? An Experimental Test with the Endangered Pallid Sturgeon

AbstractRiver modifications have altered critical habitats for fishes at a variety of spatial scales and caused global declines of many fluvial species. At small spatial scales (&lt;1 m2), alluvial sand dunes, a ubiquitous habitat in highly modified rivers, are thought to provide energetic relief for benthic fishes in energetically costly riverine landscapes created by water flow. However, use of alluvial dune habitat is not well understood, and it is unclear whether dunes provide refuge that effectively reduces energetic costs. We designed a scale‐relevant experiment to examine the energetic responses associated with sand dune habitat in rivers. We tested whether the US federally endangered pallid sturgeon (Scaphirhynchus albus), a benthic fish commonly associated with sand dunes, experienced reduced energetic costs with different configurations of simulated sand dune habitat. We quantified mass specific oxygen consumption (MO2; mg O2 kg−1 h−1) using intermittent flow‐through respirometry for age‐0 sturgeon (140–170 mm) in front of a sand dune, behind a sand dune and in the absence of a sand dune at two velocities (25 and 50 cm s−1) commonly observed in field studies of sturgeon habitat use. Sturgeon displayed distinct station holding behaviours for each habitat configuration. Dune location did not affect energy expenditure, but sturgeon MO2 was on average 16–20% higher in the absence of a sand dune depending on dune configuration. MO2 was on average 14% higher at 50 cm s−1 compared with 25 cm s−1. Our results provide a potential mechanism for over two decades of research on why sturgeon and other benthic fishes exhibit selection for sand dune habitat in large rivers. Fishes that select main channel habitats may depend on energetic relief provided by sand dunes, especially when other forms of structure are not available. For this reason, alluvial sand dune habitat may be important to the persistence of benthic fishes in high flow environments. Copyright © 2017 John Wiley &amp; Sons, Ltd.

Do beaver dams reduce habitat connectivity and salmon productivity in expansive river floodplains?

Beaver have expanded in their native habitats throughout the northern hemisphere in recent decades following reductions in trapping and reintroduction efforts. Beaver have the potential to strongly influence salmon populations in the side channels of large alluvial rivers by building dams that create pond complexes. Pond habitat may improve salmon productivity or the presence of dams may reduce productivity if dams limit habitat connectivity and inhibit fish passage. Our intent in this paper is to contrast the habitat use and production of juvenile salmon on expansive floodplains of two geomorphically similar salmon rivers: the Kol River in Kamchatka, Russia (no beavers) and the Kwethluk River in Alaska (abundant beavers), and thereby provide a case study on how beavers may influence salmonids in large floodplain rivers. We examined important rearing habitats in each floodplain, including springbrooks, beaver ponds, beaver-influenced springbrooks, and shallow shorelines of the river channel. Juvenile coho salmon dominated fish assemblages in all habitats in both rivers but other species were present. Salmon density was similar in all habitat types in the Kol, but in the Kwethluk coho and Chinook densities were 3–12× lower in mid- and late-successional beaver ponds than in springbrook and main channel habitats. In the Kol, coho condition (length: weight ratios) was similar among habitats, but Chinook condition was highest in orthofluvial springbrooks. In the Kwethluk, Chinook condition was similar among habitats, but coho condition was lowest in main channel versus other habitats (0.89 vs. 0.99–1.10). Densities of juvenile salmon were extremely low in beaver ponds located behind numerous dams in the orthofluvial zone of the Kwethluk River floodplain, whereas juvenile salmon were abundant in habitats throughout the entire floodplain in the Kol River. If beavers were not present on the Kwethluk, floodplain habitats would be fully interconnected and theoretically could produce 2× the biomass (between June–August, 1,174 vs. 667 kg) and rear 3× the number of salmon (370,000 vs. 140,000) compared to the existing condition with dams present. The highly productive Kol river produces an order of magnitude more salmon biomass and rears 40× the individuals compared to the Kwethluk. If beavers were introduced to the Kol River, we estimate that off-channel habitats would produce half as much biomass (2,705 vs. 5,404 kg) and 3× fewer individuals (1,482,346 vs. 4,856,956) owing to conversion of inter-connected, productive springbrooks into inaccessible pond complexes. We concluded that beaver dams may limit the total amount of floodplain habitat available for salmon rearing in the Kwethluk river and that the introduction of beavers to the Kol river could be detrimental to salmon populations. The introduction of beavers to other large alluvial rivers like those found in Kamchatka could have negative consequences for salmon production.

Electrofishing Effort Requirements for Estimating Species Richness in the Kootenai River, Idaho

Abstract This study was conducted on the Kootenai River, Idaho to provide insight on sampling requirements to optimize future monitoring effort associated with the response of fish assemblages to habitat rehabilitation. Our objective was to define the electrofishing effort (m) needed to have a 95% probability of sampling 50, 75, and 100% of the observed species richness and to evaluate the relative influence of depth, velocity, and instream woody cover on sample size requirements. Sidechannel habitats required more sampling effort to achieve 75 and 100% of the total species richness than main-channel habitats. The sampling effort required to have a 95% probability of sampling 100% of the species richness was 1100 m for main-channel sites and 1400 m for side-channel sites. We hypothesized that the difference in sampling requirements between main- and side-channel habitats was largely due to differences in habitat characteristics and species richness between main- and side-channel habitats. In general, main...

Seasonal Rearing Habitat in a Large Mediterranean-Climate River: Management Implications at the Southern Extent of Pacific Salmon (Oncorhynchusspp.)

Pacific salmon (Oncorhynchus) use a variety of rearing environments prior to seaward migration, yet large river habitats and their use have not been well defined, particularly at the southernmost salmon range where major landscape-level alterations have occurred. We explored juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) presence along the river continuum and in main-channel and off-channel habitats of a regulated California Mediterranean-climate river. Over an 8-year period, off-channels of the lower Mokelumne River exhibited slower and warmer water than the main-channel. Probability of salmonid presence varied by stream reach and habitat types. Steelhead and Chinook salmon both demonstrated transitional responses to the dry season, with juveniles leaving off-channels by midsummer. This corresponded to flow recession, increasing water temperatures, salmonid growth and end of emigration period. Main-channel steelhead observations continued until the following storm season, which brought cool flood flows to reconnect off-channels and the next juvenile cohort of both species to the river. Within arid climates, low-gradient off-channels appear more transiently used than in cooler and more northern humid climate systems. Within a highly regulated Mediterranean-climate river, off-channel habitats become increasingly scarce, disconnected or temperature limiting in low-gradient reaches both seasonally and due to anthropogenic modifications. These observations may provide guidance for future management within large salmon streams. Copyright © 2015 John Wiley & Sons, Ltd.

The role of the hydrological cycle on the distribution patterns of fish assemblages in an Andean stream.

The seasonal and interannual changes of the fish assemblage in the main channel and littoral zone of the Guarinó River, a torrential system located in the Colombian Andean foothills, were examined in relation to the physical and chemical environmental changes associated with the hydrological cycle and the El Niño-La Niña-Southern Oscillation (ENSO) between 2007 and 2010. Four samplings per year (in dry season and high water) were performed. Environmental variables (temperature, pH, conductivity, turbidity, oxygen, total nitrogen, orthophosphate, depth and flow rate) were contrasted with ANOVAs and a discriminant analysis to establish temporal patterns. Biological descriptors (richness, density and biomass) were contrasted with ANCOVAs. The temporal patterns of the taxonomic and functional composition and the density of the fish assemblages were examined with respect to environmental variables through canonical discriminant analysis per habitat. Interannual differences were significant with regard to density and richness for the main channel habitat; while in the littoral zone, the differences were significant between both the year and seasons. Discriminant analysis showed variations in species composition and relative abundance between the main channel and the littoral zone under contrasting hydrological conditions of El Niño-La Niña. High flows from 2008 to 2009 (La Niña) favoured resident species (e.g. Creagrutus magdalenae) and small benthic Siluriformes (e.g. Chaetostoma spp.), but was limited to migratory species (e.g. Prochilodus magdalenae). From 2009 to 2010 (El Niño), the most common species were reduced and rare species increased. River flow, temperature and oxygen were the variables that had the largest influences on the seasonal and interannual differences in the fish assemblage structure of the Guarinó River. The results suggested that the presence and abundance of species and functional groups in different habitats were regulated by stochastic conditions, such as droughts, floods and drag events associated with the Southern Oscillation phenomenon (ENSO), acting as a hydrological disturbance on the habitats and generating different responses according to the adaptive characteristics of the species.

Seasonal diet of the northern river otter (Lontra canadensis): what drives prey selection?

Diet of the northern river otter (Lontra canadensis (Schreber, 1777)) has been examined throughout much of its range and across many habitat types. Few studies have examined prey selection based on prey abundance estimates, however, and prey selection results have been inconsistent. We determined composition, seasonal variation, and prey selection of otter diet in northern Utah comprising multiple habitat types and prey communities. We evaluated the hypothesis that otters take prey according to availability and in inverse proportion to swimming ability. Fish was the primary class of prey taken by otters (96.5%), followed by crustaceans (16.9%). Among families, otter diet was composed primarily of Salmonidae and Cottidae, the two families that dominated the fish community of the main-channel habitat. Otter diet varied seasonally for nearly all classes (G[24] = 127.8, P &lt; 0.001) and families (G[18] = 132.94, P &lt; 0.001) of prey. In particular, fish occurrence was lower during summer than during other seasons (P ≤ 0.05), whereas crustacean (i.e., crayfish (Astacoidea)) occurrence was higher (G[3] = 71.1, P &lt; 0.001). At the family level, occurrence of Salmonidae was greatest during fall (G[3] = 11.7, P &lt; 0.01). Within one of our habitat types, we found otters to select for prey in proportion to abundance and in inverse proportion to swimming ability, with otters selecting for Catostomidae and Cyprinidae, against Salmonidae, and Cottidae according to its abundance. We conclude that habitat type may be the initial driver of prey selection, while factors such as abundance, agility, and life history of prey may be secondary drivers.

Differences between main-channel and off-channel food webs in the upper Mississippi River revealed by fatty acid profiles of consumers

Large river systems are often thought to contain a mosaic of patches with different habitat characteristics driven by differences in flow and mixing environments. Off-channel habitats (e.g., backwater areas, secondary channels) can become semi-isolated from main-channel water inputs, leading to the development of distinct biogeochemical environments. Observations of adult bluegill (Lepomis macrochirus) in the main channel of the Mississippi River led to speculation that the main channel offered superior food resources relative to off-channel areas. One important aspect of food quality is the quantity and composition of polyunsaturated fatty acids (PUFA). We sampled consumers from main-channel and backwater habitats to determine whether they differed in PUFA content. Main-channel individuals for relatively immobile species (young-of-year bluegill, zebra mussels [Dreissena polymorpha], and plain pocketbook mussels [Lampsilis cardium]) had significantly greater PUFA content than off-channel individuals. No difference in PUFA was observed for the more mobile gizzard shad (Dorsoma cepedianum), which may move between main-channel and off-channel habitats even at early life-history stages. As off-channel habitats become isolated from main-channel waters, flow and water column nitrogen decrease, potentially improving conditions for nitrogen-fixing cyanobacteria and vascular plants that, in turn, have low PUFA content. We conclude that main-channel food webs of the upper Mississippi River provide higher quality food resources for some riverine consumers as compared to food webs in off-channel habitats.

Migrations and swimming capabilities of endangered pallid sturgeon (Scaphirhynchus albus) to guide passage designs in the fragmented Yellowstone River

Fragmentation of the Yellowstone River is hypothesized to preclude recruitment of endangered Scaphirhynchus albus (pallid sturgeon) by impeding upstream spawning migrations and access to upstream spawning areas, thereby limiting the length of free‐flowing river required for survival of early life stages. Building on this hypothesis, the reach of the Yellowstone River affected by Intake Diversion Dam (IDD) is targeted for modification. Structures including a rock ramp and by‐pass channel have been proposed as restoration alternatives to facilitate passage. Limited information on migrations and swimming capabilities of pallid sturgeon is available to guide engineering design specifications for the proposed structures. Migration behavior, pathways (channel routes used during migrations), and swimming capabilities of free‐ranging wild adult pallid sturgeon were examined using radiotelemetry, and complemented with hydraulic data obtained along the migration pathways. Migrations of 12–26% of the telemetered pallid sturgeon population persisted to IDD, but upstream passage over the dam was not detected. Observed migration pathways occurred primarily through main channel habitats; however, migrations through side channels up to 3.9 km in length were documented. The majority of pallid sturgeon used depths of 2.2–3.4 m and mean water velocities of 0.89–1.83 m/s while migrating. Results provide inferences on depths, velocities, and habitat heterogeneity of reaches successfully negotiated by pallid sturgeon that may be used to guide designs for structures facilitating passage at IDD. Passage will provide connectivity to potential upstream spawning areas on the Yellowstone River, thereby increasing the likelihood of recruitment for this endangered species.

Perspective: Towards environmentally acceptable criteria for downstream fish passage through mini hydro and irrigation infrastructure in the Lower Mekong River Basin

Tropical rivers have high annual discharges optimal for hydropower and irrigation development. The Mekong River is one of the largest tropical river systems, supporting a unique mega-diverse fish community. Fish are an important commodity in the Mekong, contributing a large proportion of calcium, protein, and essential nutrients to the diet of the local people and providing a critical source of income for rural households. Many of these fish migrate not only upstream and downstream within main-channel habitats but also laterally into highly productive floodplain habitat to both feed and spawn. Most work to date has focused on providing for upstream fish passage, but downstream movement is an equally important process to protect. Expansion of hydropower and irrigation weirs can disrupt downstream migrations and it is important to ensure that passage through regulators or mini hydro systems is not harmful or fatal. Many new infrastructure projects (&amp;lt;6 m head) are proposed for the thousands of tributary streams throughout the Lower Mekong Basin and it is important that designs incorporate the best available science to protect downstream migrants. Recent advances in technology have provided new techniques which could be applied to Mekong fish species to obtain design criteria that can facilitate safe downstream passage. Obtaining and applying this knowledge to new infrastructure projects is essential in order to produce outcomes that are more favorable to local ecosystems and fisheries.

Habitat Use and Selection by Adult Pallid Sturgeon in the Lower Mississippi River

AbstractThe Pallid Sturgeon Scaphirhynchus albus is an endangered riverine sturgeon with historical distribution restricted to the Yellowstone, Missouri, Mississippi, and Atchafalaya rivers. Although not abundant, Pallid Sturgeon in the lower Mississippi River appear to be naturally recruiting, and information about habitat use is important to conserve this species. Thirty‐four adult Pallid Sturgeon (612–1,013‐mm FL) were tagged with acoustic transmitters and relocated a total of 272 times in a 40‐km reach of the lower Mississippi River from April 2009 through December 2012. Pallid Sturgeon strongly selected island tip and natural bank habitats, and, to a lesser degree, revetted bank habitat. Although frequently used, Pallid Sturgeon exhibited negative selection for the expansive main channel habitat. Secondary channel habitat was seasonally available and excluded from habitat selection analysis, but this habitat was frequently used in the spring when available. Fifty percent of Pallid Sturgeon detections were in relatively narrow ranges of depths (6.2–13.6 m) and surface current velocities (0.64–1.05 m/s). Use of different habitats was related to river stage and water temperature, suggesting use of some habitats was seasonal. Results suggest that maintaining natural bank habitat and secondary channel–island complexes will benefit conservation of this endangered species in the lower Mississippi River.

Effects of flooding on recruitment and abundance of Golden Perch (Macquaria ambigua ambigua) in the lower River Murray

SummaryFlooding is often considered a stimulus for production of fish in floodplain rivers. In the southern Murray–Darling Basin (MDB), Australia, however, few native fish species have been shown to use the floodplain for spawning, and recruitment has been positively and negatively associated with flooding. In 2010/11, extensive flooding in the lower River Murray provided an opportunity to investigate the recruitment response of Golden Perch (Macquaria ambigua ambigua) following 10 years of drought and floodplain isolation. Annual variation in Golden Perch abundance and recruitment were investigated in anabranch and main channel habitats at Chowilla in the floodplain geomorphic region of the lower River Murray over a 7‐year period incorporating the flood and 6 years of in‐channel flow. Spatial variation in recruitment in the lower River Murray was also investigated by comparing the age structure of Golden Perch in the swamplands/lakes, gorge and floodplain geomorphic regions. Golden Perch abundance in the Chowilla region increased significantly postflooding compared with drought years. Age structures indicated that increased abundance was due predominantly to fish spawned during the flood (2010/11) and the previous year (2009/10), which was characterised by in‐channel flows. Age structure was similar in the nearby Katarapko Anabranch system indicating a uniform postflood recruitment response in the floodplain geomorphic region. Juvenile Golden Perch from the 2010/11 and 2009/10 cohorts were less apparent in the gorge and swamplands/lakes regions. Golden Perch have flexible life histories and will spawn and recruit in association with in‐channel rises in flow and overbank flows, but significant increases in abundance in the lower River Murray may result from overbank flooding. Contemporary approaches to flow restoration in the MDB emphasise overbank flows and floodplain processes. We suggest, however, that environmental flow management that incorporates floodplain and in‐channel processes, at appropriate spatio‐temporal scales, will result in more robust populations of Golden Perch.