The phytoplankton in a number of lakes in the Bashkir Trans-Urals (Atavdy, Sultankul (2017), Bursunsy, Kuldybay (2019), Bolshiye Uchaly, Uzunkul (2021)) and Bashkir Pre-Urals (Bolshoy Tolpak, 2022)) was studied. As a result of the study, the taxonomic structure, quantitative characteristics, dominant species, distribution features of main algal groups were reveald, and their ecological and geographical characteristics werre identified. 257 species and intraspecific taxa of algae from 9 divisions were registered in the algal flora. Green algae (33%), cyanoprokaryotes and diatoms (21% each of total species number) show the highest species diversity in the lakes. The algal flora is specific for each lake and has low degree of floristic similarity (0.13–0.57 according to Sørensen coefficients). In the ecological and geographical terms, the algal floras of lake plankton is represented by typical planktonic species, widespread in waterbodies of the globe, indifferent to water salinity, living only in fresh waterbodies and preferring neutral waters. Quantitative indicators of phytoplankton varied in a wide range of values: number of cells from 4.4 to 344 mln cells/L, biomass from 0.23 to 22.97 mg/L. Dominant species in terms of abundance are represented predominantly by cyanoprokaryotes (Snowella lacustris, Aphanocapsa delicatissima, A. incerta, Aphanizomenon flos-aquae, Gloeotrichia echinulata, Merismopedia tenuissima, Pseudanabaena galeata, Planktolyngbya limnetica, Woronichinia compacta, Anathece clathrata, Rhabdoderma lineare), in terms of biomass by green (Oocystis lacustris, O. borgei, O. marssonii, Scenedesmus apiculatus), dinophyte (Peridinium cinctum, Gymnodinium sp., Ceratium furcoides), desmidium algae (Staurodesmus cuspidatus, Cosmarium contractum, C. cucumis) and cyanoprokaryotes (Pseudanabaena galeata, Aphanizomenon flos-aquae, Gloeotrichia echinulata). According to the value of the saprobity index (Pantle – Bucc by number 1.57–2.80), the lake waters correspond to β- and α-mesosaprobic types of waterbodies with III and IV water quality classes (moderately polluted or dirty water).