Machine Learning Algorithms Logistic Regression Research Articles

Enhancing Machine Learning Models Through PCA, SMOTE-ENN, and Stochastic Weighted Averaging

Predicting survival outcomes in critical accidents has been a focal point in machine learning research. This study addresses several limitations of existing methods, including insufficient management of data imbalance, lack of emphasis on hyperparameter tuning, and proneness to overfitting. Many existing models struggle to generalize effectively on imbalanced datasets or depend on default hyperparameter settings, resulting in biased predictions. By integrating Principal Component Analysis (PCA), hyperparameter optimization, and resampling methods, as well as combining Edited Nearest Neighbors (ENN) with the Synthetic Minority Oversampling Technique (SMOTE), the model significantly improves predictive accuracy and model generalization. An ensemble model combining seven machine learning algorithms—Logistic Regression, Support Vector Machine, KNN, Random Forest, XGBoost, LightGBM, and CatBoost—was applied to predict survival outcomes. Stochastic Weighted Averaging (SWA) was applied to mitigate overfitting and enhance generalization. The accuracy increased from 91.97% to 94.89% after SWA was applied in this specific scenario. The combination of PCA-based dimensionality reduction, hyperparameter tuning, and resampling techniques (ENN + SMOTE) ensured the model handled data imbalance and optimized predictive accuracy. The final model demonstrated excellent performance, with Area Under the Curve (AUC) and Average Precision (AP) values both reaching 0.98, indicating high accuracy and precision. These improvements were validated using the Titanic dataset in a binary classification problem of predicting passenger survival. The results emphasize that ensemble learning, enhanced by SWA, offers a powerful framework for handling imbalanced and complex datasets, providing significant advancements in predictive modeling accuracy. This study provides insights into how machine learning techniques can be effectively combined to solve classification challenges in real-world scenarios.

Association between risk factors and bone mineral density and the development of a self-assessment tool for early osteoporosis screening in postmenopausal women with type 2 diabetes.

Both diabetes and osteoporosis have developed into major global public health problems due to the increasing aging population. It is crucial to screen populations at higher risk of developing osteoporosis for disease prevention and management in postmenopausal women with type 2 diabetes (T2D). This study aims to quantitatively investigate the association between risk factors and bone mineral density (BMD) and develop a self-assessment tool for early osteoporosis screening in postmenopausal women with T2D. We retrospectively enrolled 1,309 postmenopausal women with T2D. Linear regression methods were used to assess the association between risk factors and BMD. Additionally, a multivariate logistic regression analysis was performed to identify independent risk factors associated with osteoporosis. Utilizing the logistic regression machine learning algorithm, we developed an osteoporosis screening tool that categorizes the population into three risk regions based on age and body mass index (BMI), indicating low, moderate, and high prevalence of osteoporosis in the age-BMI plane. Older age and lower BMI were independently associated with decreased BMD. The BMD at the total hip, femur neck, and lumbar spine differed by 12.9, 10.9, and 15.5 mg/cm2 for each 1 unit increase in BMI, respectively. Both age and BMI were identified as independent predictors of osteoporosis. The osteoporosis screening tool was developed by using two straight lines with equations of BMI = 0.56 * age-4.12 and BMI = 0.56 * age-10.88; there were no significant differences in the prevalence of osteoporosis among the training, internal test, and external test datasets in the low-, moderate-, and high-risk regions. We have successfully developed and validated a self-assessment tool for early osteoporosis screening in postmenopausal women with T2D for the first time. BMI was identified as a significant modifiable risk factor. Our study may improve awareness of osteoporosis and is valuable for disease prevention and management for postmenopausal women with T2D.

Artificial intelligence to predict pre-clinical dental student academic performance based on pre-university results: A preliminary study.

Admission into dental school involves selecting applicants for successful completion of the course. This study aimed to predict the academic performance of Kulliyyah of Dentistry, International Islamic University Malaysia pre-clinical dental students based on admission results using artificial intelligence machine learning (ML) models, and Pearsoncorrelation coefficient (PCC). ML algorithms logistic regression (LR), decision tree (DT), random forest (RF), and support vector machine (SVM) models were applied. Academic performance prediction in pre-clinical years was made using three input parameters: age during admission, pre-university Cumulative Grade Point Average (CGPA), and total matriculation semester. PCC was deployed to identify the correlation between pre-university CGPA and dental school grades. The proposed models' classification accuracy ranged from 29% to 57%, ranked from highest to lowest as follows: RF, SVM, DT, and LR. Pre-university CGPA was shown to be predictive of dental students' academic performance; however, alone they did not yield optimal outcomes. RF was the most precise algorithm for predicting grades A, B, and C, followed by LR, DT, and SVM. In forecasting failure, LR predicted three grades with the highest recall, SVM predicted two grades, and DT predicted one. RF performance was insignificant. The findings demonstrated the application of ML algorithms and PCC to predict dental students' academic performance. However, it was limited by several factors. Each algorithm has unique performance qualities, and trade-offs between different performance metrics may be necessary. No definitive model stood out as the best algorithm for predicting student academic success in this study.

A Clinical-radiomic Nomogram for the Non-invasive Evaluation of Glomerular Status in Diabetic Kidney Disease.

Utilizing ultrasound radiomics, we developed a machine learning (ML) model to construct a nomogram for the non-invasive evaluation of glomerular status in diabetic kidney disease (DKD). Patients with DKD who underwent renal biopsy were retrospectively enrolled between February 2017 and February 2023. The patients were classified into mild or moderate-severe glomerular severity based on pathological findings. All patients were randomly divided into a training (n =79) or testing cohort (n = 35). Radiomic features were extracted from ultrasound images, and a logistic regression ML algorithm was applied to construct an ultrasound radiomic model after selecting the most significant features using univariate analysis and the least absolute shrinkage and selection operator algorithm (LASSO). A clinical model was created following univariate and multivariate logistic regression analyses of the patient's clinical characteristics. Then, the clinical-radiomic model was constructed by combining rad scores and independent clinical characteristics and plotting the nomogram. The receiver operating characteristic curve (ROC) and decision curve analysis (DCA), respectively, were used to evaluate the prediction abilities of the clinical model, ultrasound-radiomics model, and clinical-radiomics model. A total of 114 DKD patients were included in the study, including 43 with mild glomerulopathy and 71 with moderate-severe glomerulopathy. The area under the curve (AUC) for the clinical model based on clinical features and the radiomic model based on 2D ultrasound images in the testing cohort was 0.729 and 0.761, respectively. Further, the AUC for the clinical-radiomic nomogram was constructed by combining clinical features, and the rad score was 0.850 in the testing cohort. The outcomes were better than those of both the radiomic and clinical single-model approaches. The nomogram constructed by combining ultrasound radiomics and clinical features has good performance in assessing the glomerular status of patients with DKD and will help clinicians monitor the progression of DKD.</p>.

Predicting renal damage in children with IgA vasculitis by machine learning.

Children with IgA Vasculitis (IgAV) may develop renal complications, which can impact their long-term prognosis. This study aimed to build a machine learning model to predict renal damage in children with IgAV and analyze risk factors for IgA Vasculitis with Nephritis (IgAVN). 50 clinical indicators were collected from 217 inpatients at our hospital. Six machine learning algorithms-Logistic Regression, Linear Discriminant Analysis, K-Nearest Neighbor, Support Vector Machine, Decision Trees, and Random Forest-were utilized to select the model with the highest predictive performance. A simplified model was developed through feature importance ranking and validated by an additional cohort with 46 patients. The random forest model had the highest accuracy, precision, recall, F1 score, and area under the curve, with values of 0.91, 0.98, 0.70, 0.79 and 0.94, respectively. The top 11 features according to the importance ranking were anti-streptolysin O, corticosteroids therapy, antihistamine therapy, absolute eosinophil count, immunoglobulin E, anticoagulant therapy, C-reactive protein, prothrombin time, age at onset, D-dimer, recurrence of rash ≥ 3 times. A simplified model using these features demonstrated optimal performance with an accuracy of 84.2%, a sensitivity of 89.4%, and a specificity of 82.5% in external validation. Finally, we provided a web tool based on the simplified model, whose code was published on https://github.com/mulanruo/IgAVN_Prediction . The model based on the random forest algorithm demonstrates good performance in predicting renal damage in children with IgAV, providing a basis for early clinical diagnosis and decision-making.

Investigation of Personality Traits Using Data from Facebook, Tweet's and Handwriting Samples

Personality characteristics are characterized as persistent habits of mind that have been related to a wide range of consequential choices and events. Personality qualities are correlated with one's level of happiness in relationships, career paths pursued, and other areas of life. As a result, there was surge in recent years in desire to create models that can anticipate personality characteristics in an automated fashion. With use of social media, anybody may establish a virtual identity &amp; connect with others via the sharing of personal information and user-generated material. One kind of user behavior which socioeconomic and psychological factors often shape is how they present themselves. Furthermore, there has been lot of interest in the ability to anticipate a person's personality based upon their physiological signals, which may be analyzed in real time. Personality can be predicted considerably more accurately, which can be quite beneficial for society as a whole. And many of the researchers used the provided data for the methodical creation of health care, social marketing networks, and individually recognized advice. And after a brief discussion of the admiration of social networks like Twitter, Facebook, &amp; Linked In, researchers were able to conduct their studies using the public data that was made available through these platforms as well as social behavior traits that could be used to predict personality traits for friends and followers. Online social media platforms networks offer increasing opportunities for knowledge discovery and the public's data in relation to their views. The social media networking content's structured information can be used to forecast the key and most significant personality traits. These days, people frequently communicate some of their ideas, facts, and emotions—and especially their personality traits—on social media platforms, which is how data is produced. Proposed the Myers Briggs Type Indicator (MBTI system) is a personality predicting type system that system that divides people into 16 components of personality types based on four axes: Extroversion(E) – Introversion(I) Thinking(T) – Feeling(F) using KNN and Logistic regression machine learning algorithms.

A dynamic online nomogram for predicting renal outcomes of idiopathic membranous nephropathy

BackgroundBecause spontaneous remission is common in IMN, and there are adverse effects of immunosuppressive therapy, it is important to assess the risk of progressive loss of renal function before deciding whether and when to initiate immunosuppressive therapy. Therefore, this study aimed to establish a risk prediction model to predict patient prognosis and treatment response to help clinicians evaluate patient prognosis and decide on the best treatment regimen.MethodsFrom September 2019 to December 2020, a total of 232 newly diagnosed IMN patients from three hospitals in Liaoning Province were enrolled. Logistic regression analysis selected the risk factors affecting the prognosis, and a dynamic online nomogram prognostic model was constructed based on extreme gradient boost, random forest, logistic regression machine learning algorithms. Receiver operating characteristic and calibration curves and decision curve analysis were utilized to assess the performance and clinical utility of the developed model.ResultsA total of 130 patients were in the training cohort and 102 patients in the validation cohort. Logistic regression analysis identified four risk factors: course ≥ 6 months, UTP, D-dimer and sPLA2R-Ab. The random forest algorithm showed the best performance with the highest AUROC (0.869). The nomogram had excellent discrimination ability, calibration ability and clinical practicability in both the training cohort and the validation cohort.ConclusionsThe dynamic online nomogram model can effectively assess the prognosis and treatment response of IMN patients. This will help clinicians assess the patient’s prognosis more accurately, communicate with the patient in advance, and jointly select the most appropriate treatment plan.

Sentiment Analysis of IMDb Movie Reviews

This paper presents a sentiment analysis project focusing on IMDb movie reviews, aimed at classifying reviews as either positive or negative based on their textual content. Utilizing a dataset of 50,000 IMDb movie reviews, sourced from Kaggle, the study addresses the binary classification challenge by employing pre- processing techniques such as TF-IDF vectorization. The dataset is split into training and testing sets, with models trained on the former and evaluated on the latter. Three machine learning algorithms—Logistic Regression, Random Forest, and Decision Tree—are implemented and compared using performance metrics including precision, recall, and F1-score. Results indicate that Logistic Regression outperforms other models in sentiment analysis classification. The report concludes by highlighting the project’s contributions and suggesting avenues for future research, emphasizing the potential benefits of expanding sentiment types and dataset size.

Development and validation of prediction models for papillary thyroid cancer structural recurrence using machine learning approaches

BackgroundAlthough papillary thyroid cancer (PTC) patients are known to have an excellent prognosis, up to 30% of patients experience disease recurrence after initial treatment. Accurately predicting disease prognosis remains a challenge given that the predictive value of several predictors remains controversial. Thus, we investigated whether machine learning (ML) approaches based on comprehensive predictors can predict the risk of structural recurrence for PTC patients.MethodsA total of 2244 patients treated with thyroid surgery and radioiodine were included. Twenty-nine perioperative variables consisting of four dimensions (demographic characteristics and comorbidities, tumor-related variables, lymph node (LN)-related variables, and metabolic and inflammatory markers) were analyzed. We applied five ML algorithms—logistic regression (LR), support vector machine (SVM), extreme gradient boosting (XGBoost), random forest (RF), and neural network (NN)—to develop the models. The area under the receiver operating characteristic (AUC-ROC) curve, calibration curve, and variable importance were used to evaluate the models’ performance.ResultsDuring a median follow-up of 45.5 months, 179 patients (8.0%) experienced structural recurrence. The non-stimulated thyroglobulin, LN dissection, number of LNs dissected, lymph node metastasis ratio, N stage, comorbidity of hypertension, comorbidity of diabetes, body mass index, and low-density lipoprotein were used to develop the models. All models showed a greater AUC (AUC = 0.738 to 0.767) than did the ATA risk stratification (AUC = 0.620, DeLong test: P < 0.01). The SVM, XGBoost, and RF model showed greater sensitivity (0.568, 0.595, 0.676), specificity (0.903, 0.857, 0.784), accuracy (0.875, 0.835, 0.775), positive predictive value (PPV) (0.344, 0.272, 0.219), negative predictive value (NPV) (0.959, 0.959, 0.964), and F1 score (0.429, 0.373, 0.331) than did the ATA risk stratification (sensitivity = 0.432, specificity = 0.770, accuracy = 0.742, PPV = 0.144, NPV = 0.938, F1 score = 0.216). The RF model had generally consistent calibration compared with the other models. The Tg and the LNR were the top 2 important variables in all the models, the N stage was the top 5 important variables in all the models.ConclusionsThe RF model achieved the expected prediction performance with generally good discrimination, calibration and interpretability in this study. This study sheds light on the potential of ML approaches for improving the accuracy of risk stratification for PTC patients.Trial registrationRetrospectively registered at www.chictr.org.cn (trial registration number: ChiCTR2300075574, date of registration: 2023-09-08).

Revolutionizing gastric cancer diagnosis through advanced machine learning approaches

&lt;p class="Keywords"&gt;Early detection of gastric cancer through a Computer-Aided Detection (CAD) system has the potential to significantly reduce the mortality rate associated with this disease. This study aims to investigate the effects of class imbalance on the performance of machine learning classifiers in this context. Using a dataset of 145,787 screening records from NHS Liverpool Hospital, we employed stratified sampling to create balanced and unbalanced datasets and evaluated the performance of four machine learning algorithms—Logistic Regression, Support Vector Machine, Naive Bayes, and Multilayer Perceptron—under five different test conditions. The study’s novelty lies in its detailed examination of class imbalance in gastric cancer diagnosis, emphasizing the crucial role of balanced datasets in machine learning-based early detection systems. For the MLP model under 10-fold cross-validation, the Class 0 sensitivity (non-cancer cases) of the unbalanced dataset was 0.968, higher than the balanced dataset’s 0.902. However, the Class 1 sensitivity (cancer cases) and Positive Predictive Value (PPV) of the unbalanced dataset were much lower (0.383 and 0.527) than those of the balanced dataset (0.959 and 0.907), indicating a significant improvement in identifying true positive cases when using a balanced dataset. These findings highlight the negative effect of class imbalance on prediction accuracy for positive cancer cases and underscore the importance of addressing this imbalance for more reliable and accurate predictions in medical diagnosis and screening. This approach has the potential to improve patient outcomes and may contribute to strategies aimed at reducing the mortality rate associated with gastric cancer.&lt;/p&gt;

Machine learning determines stemness associated with simple and basal-like canine mammary carcinomas

Simple and complex carcinomas are the most common type of malignant Canine Mammary Tumors (CMTs), with simple carcinomas exhibiting aggressive behavior and poorer prognostic. Stemness is an ability associated with cancer initiation, malignancy, and therapeutic resistance, but is still few elucidated in canine mammary tumor subtypes. Here, we first validated, using CMT samples, a previously published canine one-class logistic regression machine learning algorithm (OCLR) to predict stemness (mRNAsi) in canine cancer cells. Then, using the canine mRNAsi, we observed that simple carcinomas exhibit higher stemness than complex carcinomas and other histological subtypes. Also, we confirmed that stemness is higher and associated with basal-like CMTs and with NMF2 metagene signature, a tumor-specific DNA-repair metagene signature. Using correlation analysis, we selected the top 50 genes correlated with higher stemness, and the top 50 genes correlated with lower stemness and further performed a gene set enrichment analysis to observe the biological processes enriched for these genes. Finally, we suggested two promise stemness-associated targets in CMTs, POLA2 and APEX1, especially in simple carcinomas. Thus, our work elucidates stemness as a potential mechanism behind the aggressiveness and development of canine mammary tumors, especially in simple carcinomas, describing evidence of a promising strategy to target this disease.

A machine learning one-class logistic regression model to predict stemness for single cell transcriptomics and spatial omics

Cell annotation is a crucial methodological component to interpreting single cell and spatial omics data. These approaches were developed for single cell analysis but are often biased, manually curated and yet unproven in spatial omics. Here we apply a stemness model for assessing oncogenic states to single cell and spatial omic cancer datasets. This one-class logistic regression machine learning algorithm is used to extract transcriptomic features from non-transformed stem cells to identify dedifferentiated cell states in tumors. We found this method identifies single cell states in metastatic tumor cell populations without the requirement of cell annotation. This machine learning model identified stem-like cell populations not identified in single cell or spatial transcriptomic analysis using existing methods. For the first time, we demonstrate the application of a ML tool across five emerging spatial transcriptomic and proteomic technologies to identify oncogenic stem-like cell types in the tumor microenvironment.

ENSEMBLE STACKING DALAM ANALISA SENTIMEN REAKSI VETERAN MILITER AS TERHADAP PENGAMBILALIHAN AFGHANISTAN OLEH TALIBAN

Abstrak— Sentiment analysis can be used to glean information about user opinions and identify social or political trends. There have been many studies on sentiment analysis using machine learning or lexicon-based methods that have been quite impressive. However, machine learning models often have difficulty generalizing to new data due to various reasons, such as overfitting and limited training data. These models are also prone to bias and variance, which negatively affect the accuracy of their predictions. This study discusses the application of the ensemble stacking method in sentiment analysis with the topic of the takeover of Afghanistan by the Taliban. By monitoring social media, the author uses a dataset in the form of comments on YouTube news channels related to the topic raised. Several studies have shown how the ensemble stacking method predicts better than the single model. The research was carried out by creating a sentiment classification model with logistic regression machine learning algorithms, SVM, KNN, and CART then the ensemble stacking classifier formed by the base learner of the four algorithms. As a result, for a single classifier, the highest average accuracy is the logistic regression algorithm of 74.6 percent. The four algorithms are compiled and predicted by logistic regression, and the stacking ensemble classifier that is applied produces better accuracy than the stand-alone classifier, which is 75.3 percent

Heart Disease Prediction Using Machine Learning

Abstract: Machine learning has been widely adopted by many other businesses as a result about its tremendous success in ecommerce, retail, &amp; marketing. Healthcare sector is one about these. Aforementioned sector is regarded for being "information rich" &amp; offers considerable potential for making wise decisions &amp; spotting hidden patterns. We can deal with aforementioned scenario using cutting-edge machine learning algorithms. Heart diseases are among topics certain are most frequently discussed in healthcare sector. A vital organ is heart. It circulates blood &amp; gives it towards all organs so they can work. A key piece about research in aforementioned area is prediction about heart disease incidence. Machine learning algorithm Logistic Regression was employed in aforementioned study. Using aforementioned technique, a prediction system is developed towards determine if a given patient is at risk for heart disease or not. primary goal is towards determine most accurate algorithm certain is suitable for this.

Performance Evaluation of Various Machine Learning Algorithms in Prediction of Chronic kidney disease (CKD)

With a high rate of morbidity and mortality as well as the ability to spread other diseases, chronic kidney disease (CKD) is a major worldwide health concern. Patients sometimes overlook the disease in the early stages of CKD since there are no evident symptoms. Early diagnosis of CKD enables patients to receive effective treatment in time to slow the disease's progression. Due to their quick and precise detection capabilities, machine learning models can help therapists accomplish this goal efficiently. In this research, we suggest a machine learning approach to CKD diagnosis. The website KAGGLE provided the CKD data set, which has a significant number of missing values.. The mean value is used to fill in the blanks; for object data types (strings), we utilized the most frequent object (string) to replace the missing values. Since patients may overlook particular measurements for a variety of reasons, missing values are typically observed in real-world medical scenarios. Four machine learning algorithms—Logistic Regression, SVM, Random Forest Classifier, and Decision Tree Classifier—were applied to create models after successfully completing the incomplete data set. Random Forest has the highest accuracy of these machine learning models.

Characterization of stemness features and construction of a stemness subtype classifier to predict survival and treatment responses in lung squamous cell carcinoma

BackgroundCancer stemness has been proven to affect tumorigenesis, metastasis, and drug resistance in various cancers, including lung squamous cell carcinoma (LUSC). We intended to develop a clinically applicable stemness subtype classifier that could assist physicians in predicting patient prognosis and treatment response.MethodsThis study collected RNA-seq data from TCGA and GEO databases to calculate transcriptional stemness indices (mRNAsi) using the one-class logistic regression machine learning algorithm. Unsupervised consensus clustering was conducted to identify a stemness-based classification. Immune infiltration analysis (ESTIMATE and ssGSEA algorithms) methods were used to investigate the immune infiltration status of different subtypes. Tumor Immune Dysfunction and Exclusion (TIDE) and Immunophenotype Score (IPS) were used to evaluate the immunotherapy response. The pRRophetic algorithm was used to estimate the efficiency of chemotherapeutic and targeted agents. Two machine learning algorithms (LASSO and RF) and multivariate logistic regression analysis were performed to construct a novel stemness-related classifier.ResultsWe observed that patients in the high-mRNAsi group had a better prognosis than those in the low-mRNAsi group. Next, we identified 190 stemness-related differentially expressed genes (DEGs) that could categorize LUSC patients into two stemness subtypes. Patients in the stemness subtype B group with higher mRNAsi scores exhibited better overall survival (OS) than those in the stemness subtype A group. Immunotherapy prediction demonstrated that stemness subtype A has a better response to immune checkpoint inhibitors (ICIs). Furthermore, the drug response prediction indicated that stemness subtype A had a better response to chemotherapy but was more resistant to epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs). Finally, we constructed a nine-gene-based classifier to predict patients’ stemness subtype and validated it in independent GEO validation sets. The expression levels of these genes were also validated in clinical tumor specimens.ConclusionThe stemness-related classifier could serve as a potential prognostic and treatment predictor and assist physicians in selecting effective treatment strategies for patients with LUSC in clinical practice.

Data-Driven Two-Stage Framework for Identification and Characterization of Different Antibiotic-Resistant Escherichia coli Isolates Based on Mass Spectrometry Data.

In clinical microbiology, matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS) is frequently employed for rapid microbial identification. However, rapid identification of antimicrobial resistance (AMR) in Escherichia coli based on a large amount of MALDI-TOF MS data has not yet been reported. This may be because building a prediction model to cover all E. coli isolates would be challenging given the high diversity of the E. coli population. This study aimed to develop a MALDI-TOF MS-based, data-driven, two-stage framework for characterizing different AMRs in E. coli. Specifically, amoxicillin (AMC), ceftazidime (CAZ), ciprofloxacin (CIP), ceftriaxone (CRO), and cefuroxime (CXM) were used. In the first stage, we split the data into two groups based on informative peaks according to the importance of the random forest. In the second stage, prediction models were constructed using four different machine learning algorithms-logistic regression, support vector machine, random forest, and extreme gradient boosting (XGBoost). The findings demonstrate that XGBoost outperformed the other four machine learning models. The values of the area under the receiver operating characteristic curve were 0.62, 0.72, 0.87, 0.72, and 0.72 for AMC, CAZ, CIP, CRO, and CXM, respectively. This implies that a data-driven, two-stage framework could improve accuracy by approximately 2.8%. As a result, we developed AMR prediction models for E. coli using a data-driven two-stage framework, which is promising for assisting physicians in making decisions. Further, the analysis of informative peaks in future studies could potentially reveal new insights. IMPORTANCE Based on a large amount of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS) clinical data, comprising 37,918 Escherichia coli isolates, a data-driven two-stage framework was established to evaluate the antimicrobial resistance of E. coli. Five antibiotics, including amoxicillin (AMC), ceftazidime (CAZ), ciprofloxacin (CIP), ceftriaxone (CRO), and cefuroxime (CXM), were considered for the two-stage model training, and the values of the area under the receiver operating characteristic curve (AUC) were 0.62 for AMC, 0.72 for CAZ, 0.87 for CIP, 0.72 for CRO, and 0.72 for CXM. Further investigations revealed that the informative peak m/z 9714 appeared with some important peaks at m/z 6809, m/z 7650, m/z 10534, and m/z 11783 for CIP and at m/z 6809, m/z 10475, and m/z 8447 for CAZ, CRO, and CXM. This framework has the potential to improve the accuracy by approximately 2.8%, indicating a promising potential for further research.

Preoperative prediction of macrotrabecular-massive hepatocellular carcinoma through dynamic contrast-enhanced magnetic resonance imaging-based radiomics.

Macrotrabecular-massive hepatocellular carcinoma (MTM-HCC) is closely related to aggressive phenotype, gene mutation, carcinogenic pathway, and immunohistochemical markers and is a strong independent predictor of early recurrence and poor prognosis. With the development of imaging technology, successful applications of contrast-enhanced magnetic resonance imaging (MRI) have been reported in identifying the MTM-HCC subtype. Radiomics, as an objective and beneficial method for tumour evaluation, is used to convert medical images into high-throughput quantification features that greatly push the development of precision medicine. To establish and verify a nomogram for preoperatively identifying MTM-HCC by comparing different machine learning algorithms. This retrospective study enrolled 232 (training set, 162; test set, 70) hepatocellular carcinoma patients from April 2018 to September 2021. A total of 3111 radiomics features were extracted from dynamic contrast-enhanced MRI, followed by dimension reduction of these features. Logistic regression (LR), K-nearest neighbour (KNN), Bayes, Tree, and support vector machine (SVM) algorithms were used to select the best radiomics signature. We used the relative standard deviation (RSD) and bootstrap methods to quantify the stability of these five algorithms. The algorithm with the lowest RSD represented the best stability, and it was used to construct the best radiomics model. Multivariable logistic analysis was used to select the useful clinical and radiological features, and different predictive models were established. Finally, the predictive performances of the different models were assessed by evaluating the area under the curve (AUC). The RSD values based on LR, KNN, Bayes, Tree, and SVM were 3.8%, 8.6%, 4.3%, 17.7%, and 17.4%, respectively. Therefore, the LR machine learning algorithm was selected to construct the best radiomics signature, which performed well with AUCs of 0.766 and 0.739 in the training and test sets, respectively. In the multivariable analysis, age [odds ratio (OR) = 0.956, P = 0.034], alpha-fetoprotein (OR = 10.066, P < 0.001), tumour size (OR = 3.316, P = 0.002), tumour-to-liver apparent diffusion coefficient (ADC) ratio (OR = 0.156, P = 0.037), and radiomics score (OR = 2.923, P < 0.001) were independent predictors of MTM-HCC. Among the different models, the predictive performances of the clinical-radiomics model and radiological-radiomics model were significantly improved compared to those of the clinical model (AUCs: 0.888 vs 0.836, P = 0.046) and radiological model (AUCs: 0.796 vs 0.688, P = 0.012), respectively, in the training set, highlighting the improved predictive performance of radiomics. The nomogram performed best, with AUCs of 0.896 and 0.805 in the training and test sets, respectively. The nomogram containing radiomics, age, alpha-fetoprotein, tumour size, and tumour-to-liver ADC ratio revealed excellent predictive ability in preoperatively identifying the MTM-HCC subtype.

Loan Amount Prediction Based on Credit History and Other Variables

Loan approval is a very important process for banking organizations. The system approved or reject the loan applications. Recovery of loans is a major contributing parameter in the financial statements of a bank. It is very difficult to predict the possibility of payment of loan by the customer. In recent years many researchers worked on loan approvalprediction systems. Machine Learning (ML)techniques are very useful in predicting outcomes for large amount of data. In this paper three machine learning algorithms, Logistic Regression (LR), Decision Tree (DT) and Random Forest (RF) are applied to predict the loan approval of customers. The experimental results conclude that the accuracy of Logistic Regression machine learning algorithm is better as compared to Decision Tree and Random Forest machine learning approaches.

Characterization of the microenvironment of diabetic foot ulcers and potential drug identification based on scRNA-seq.

Diabetes foot ulcers (DFUs) are a type of foot infection, ulcer, and/or deep tissue destruction caused by neuropathy and vascular disease in the distal extremities of diabetic patients. Its pathogenesis and its microenvironment are not entirely understood. Initially, the GSE165816 data set from the GEO database was utilized for single cell analysis to reveal the microenvironment and functional status of DFUs. The GSE199939 RNA-seq data set was utilized for external validation. On the basis of the logistic regression machine learning algorithm (OCLR), pseudo time series analysis, dryness index analysis, and drug target gene analysis were then performed. By constructing drug-gene and gene-gene networks, we can locate the most recent DFUs treatments. Finally, immunofluorescence technology was used to detect the cell-related markers of the DFUs microenvironment, and qPCR was used to detect the expression of drug targets in DFUs. Firstly, we used the Cell Maker database to obtain information about human cells and related gene markers, and manually reviewed a total of 45 kinds of cells and maker information that may appear in the DFUs microenvironment, which were divided into 17 cell clusters after annotation. Subsequently, we counted the proportions of DM and DFUs in different types of cells, and the results showed that the proportions of macrophages, white blood cells, and monocytes were higher in patients with DFUs, while the proportions of pluripotent stem cells and stromal cells were higher in patients with DM. The Pseudo-time series analysis of cells in DFUs showed that the differentiation pathways of immune cells, mesenchymal cells and stem cells were similar in the three states, while the other cells were distributed in different stages. At the level of a single cell, the scores of both multipotential stem cells and hematopoietic stem cells were significantly lower in DFU healing and non-healing than in DM. Additionally, the highly expressed genes in DFU were chosen as drug targets. We identified seven potential target genes and discovered twenty drugs with high significance. Finally, the colocalization relationship between CD19, ITGAM, and HLA-DR expression in monocytes and macrophages of DFU skin tissue and healthy subjects was analyzed by laser confocal microscopy with the immunofluorescence triple labeling method. The results showed that the expressions of CD19, ITGAM, and HLA-DR in the skin of DFUs were significantly higher than those in the skin of healthy subjects, and the co-localization relationship was significant in DFUs. This study can serve as a resource for the treatment of DFUs.