The green alga Botryococcus braunii can photosynthetically fix CO2 and accumulate abundant hydrocarbons, which has driven interest in this species as a sustainable biofuel. In this study, five strains of B. braunii (SAG 807-1, SAG 2532, SAG 30.81, SC-1, and SC-2) were identified based on the nucleotide sequence of 18S rDNA, of which SC-1 and SC-2 were isolated from the water bodies of southern China by our laboratory. Then, the effects of different media and initial nitrogen concentrations on the growth, total lipid contents, fatty acid profiles, and hydrocarbon compositions in these five strains were compared. Molecular identification revealed that B. braunii SC-1 and SC-2 belong to races B and L, respectively, while SAG 807-1, SAG 2532, and SAG 30.81 belong to race A. Compared with mBBM and mEndo media, SAG 807-1, SAG 2532, SC-1, and SC-2 grew faster in mBG-11 media. The highest total lipid content of SAG 807–1, SAG 30.81, and SC-1 reached >45 % of cell dry weight (DW), with the maximum total lipid content of SC-2 reaching 66.52 % of DW. The major fatty acid components of the five strains of B. braunii were palmitic acid (C16:0), oleic acid (C18:1), and erucic acid (C22:1). The maximum hydrocarbon content was 22.13 % DW in B. braunii SC-1, of which 1.4 % DW was squalene. Squalene is widely used as an antioxidant and as an adjuvant in vaccines.
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