Lower Trophic Levels Research Articles

Sympatric otariids increase trophic segregation in response to warming ocean conditions in Peruvian Humboldt Current System.

Determining trophic habits of predator communities is essential to measure interspecific interactions and response to environmental fluctuations. South American fur seals, Arctocephalus australis (SAFS) and sea lions Otaria byronia (SASL), coexist along the coasts of Peru. Recently, ocean warming events (2014–2017) that can decrease and impoverish prey biomass have occurred in the Peruvian Humboldt Current System. In this context, our aim was to assess the effect of warming events on long-term inter- and intra-specific niche segregation. We collected whisker from SAFS (55 females and 21 males) and SASL (14 females and 22 males) in Punta San Juan, Peru. We used δ13C and δ15N values serially archived in otariid whiskers to construct a monthly time series for 2005–2019. From the same period we used sea level anomaly records to determine shifts in the predominant oceanographic conditions using a change point analysis. Ellipse areas (SIBER) estimated niche width of species-sex groups and their overlap. We detected a shift in the environmental conditions marking two distinct periods (P1: January 2005—October 2013; P2: November 2013—December 2019). Reduction in δ15N in all groups during P2 suggests impoverished baseline values with bottom-up effects, a shift towards consuming lower trophic level prey, or both. Reduced overlap between all groups in P2 lends support of a more redundant assemblage during the colder P1 to a more trophically segregated assemblage during warmer P2. SASL females show the largest variation in response to the warming scenario (P2), reducing both ellipse area and δ15N mean values. Plasticity to adapt to changing environments and feeding on a more available food source without fishing pressure can be more advantageous for female SASL, albeit temporary trophic bottom-up effects. This helps explain larger population size of SASL in Peru, in contrast to the smaller and declining SAFS population.

Effects of forest management on mercury bioaccumulation and biomagnification along the river continuum

Forest management can alter the mobilization of mercury (Hg) into headwater streams and its conversion to methylmercury (MeHg), the form that bioaccumulates in aquatic biota and biomagnifies through food webs. As headwater streams are important sources of organic materials and nutrients to larger systems, this connectivity may also increase MeHg in downstream biota through direct or indirect effects of forestry on water quality or food web structure. In this study, we collected water, seston, food sources (biofilm, leaves, organic matter), five macroinvertebrate taxa and fish (slimy sculpin; Cottus cognata) at 6 sites representing different stream orders (1–5) within three river basins with different total disturbances from forestry (both harvesting and silviculture). Methylmercury levels were highest in water and some food sources from the basin with moderate disturbance (greater clearcutting but less silviculture). Water, leaves, stoneflies and fish increased in MeHg or total Hg along the river continuum in the least disturbed basin, and there were some dissipative effects of forest management on these spatial patterns. Trophic level (δ15N) was a significant predictor of MeHg (and total Hg in fish) within food webs across all 18 sites, and biomagnification slopes were significantly lower in the basin with moderate total disturbance but not different in the other two basins. The elevated MeHg in lower trophic levels but its reduced trophic transfer in the basin with moderate disturbance was likely due to greater inputs of sediments and of dissolved organic carbon that is more humic, as these factors are known to both increase transport of Hg to streams and its uptake in primary producers but to also decrease MeHg bioaccumulation in consumers. Overall, these results suggest that the type of disturbance from forestry affects MeHg bioaccumulation and trophic transfer in stream food webs and some longitudinal patterns along a river continuum.

Copepod community structure in the transition region of the North Pacific Ocean: Water mixing as a key driver of secondary production enhancement in subarctic and subtropical waters

The North Pacific Ocean subtropical–subarctic gyre transition region is recognized as an important small pelagic fish nursery and feeding ground. To clarify the lower trophic level variability of the transition region pelagic ecosystem, we investigated the large-scale variation in copepod communities in relation to the oceanographic environment. We net sampled zooplankton in the upper 150 m from the coast to approximately 4,500 km offshore to the east (140° E − 165° W) during early summer in 2017 and 2018. Cluster analysis based on abundance and species composition at 233 sampling stations showed that the subarctic boundary, defined by a salinity of 34.0 at 150 m depth, separated subarctic and subtropical copepod communities, as a clear biogeographical border. The two communities were each further classified into four subgroups. Among the subgroups, a typical subarctic subgroup dominated by Neocalanus spp. was broadly distributed in the subarctic HNLC (high-nutrient and low-chlorophyll a concentrations) region, whereas a typical subtropical subgroup characterized by a higher overall species diversity occurred in the warm oligotrophic water. In addition, in both these subgroups, the composition of the chlorophyll a size fraction suggested that the food web was mainly based on small-sized phytoplankton. Further analysis of the other subgroups indicated that both the subtropical and subarctic communities showed distinctive succession patterns depending on the degree of water mixing. During succession, a consistent increase in copepod abundance, especially large-sized suspension feeders (e.g., Eucalanus and Calanus) associated with the high productivity of large diatoms was observed in both main communities. The present study revealed that water mixing in the transition region consistently enhances the grazing food chain in both subtropical and subarctic communities, showing the potential underlying mechanisms of control of prey availability for small pelagic fish that exploit the region as a key nursery and feeding ground.

Seasonal assessment of the trophic status in the coastal waters adjoining Tuticorin harbor in relation to water quality and plankton community in the Gulf of Mannar, India

Seasonal variations in hydrography, trophic status, and plankton community structure were studied along the Tuticorin coastal waters (TCWs) in the Gulf of Mannar (GoM). Samples were collected in 2015 and 2016 to analyze physico-chemical (temperature, pH, salinity, suspended particulate matter (SPM), dissolved oxygen (DO), nutrients, etc.) and biological parameters (chlorophyll-a, phytoplankton, and zooplankton). The trophic index (TRIX) and eutrophication index (EI) were calculated to describe the eutrophication status of TCWs. Temperature, pH, salinity, DO, and SPM showed seasonality due to the impact of the northeast monsoon. A massive bloom of Trichodesmium erythraeum was observed, with a visible impact on water quality and the plankton community. The cluster and principal component analysis indicated the bloom event as a distinct phenomenon. ANOVA results showed significant seasonal variations rather than spatial variations. According to the trophic indices, the area had a low trophic level in 2015 and a high trophic level in 2016. The Tuticorin inshore waters had the highest TRIX and EI values during the dominance of cyanobacteria bloom in the post-monsoon 2016. The trophic indices had a positive relationship with phytoplankton abundance but showed an inverse relation with zooplankton abundance. The overall range of the TRIX index (3.18–5.96) indicated that the environment was oligotrophic to eutrophic, and EI values (0.72–21.61) indicated that the state of coastal waters was moderate to poor. This study states that periodic monsoonal flow and frequent algal bloom events have a significant impact on the GoM coastal waters.

Intensive marine finfish aquaculture impacts community structure and metal bioaccumulation in meso-zooplankton

Commercial aquaculture has a profound impact on coastal marine environments. Here, we investigate the spatial impact of intensive commercial finfish aquaculture on local meso-zooplankton communities and the bioaccumulation of aquaculturally-derived metals (and other elements) within zooplankton samples in the Vourlias Bay, Greece. The results indicate alterations to zooplankton community composition correlate with increased eutrophic compound concentrations in the water column in closer proximity to aquaculture stations (100–300 m from fish cages). During the summer sampling, higher concentrations of accumulated metals within zooplankton samples were found at reference stations furthest from fish cages (>1000 m). During the winter sampling, however, spatial differences in accumulated metal concentrations were limited. We suggest metals are rapidly accumulated at lower trophic levels near aquaculture stations and are then dispersed to greater distances while ascending the trophic chain. This research provides good evidence for future investigations into zooplankton as an environmental impact bioindicator for aquaculture.

Toxicological risk of mercury for fish and invertebrate prey in the Arctic.

We assessed the risks of mercury (Hg) to Arctic marine and freshwater fish by compiling published muscle Hg concentrations and information on tissue concentrations associated with adverse effects. The assessment included 333 groups of fish representing 35 genera and 14,002 individuals sampled from sites across the circumpolar Arctic. Mean or median Hg concentrations in fish muscle varied widely from 0.005 μg/g ww to a maximum of 2.2 μg/g ww. Results indicate that most (n = 139 of 333 or ~ 42%) Arctic fish are not at risk for Hg toxicity, based on the large number of fish mean or median muscle Hg concentrations below 0.1 μg/g ww. A smaller number of the identified groups (n = 76 of 333 or ~ 23%) of Arctic fish had mean or median Hg concentrations consistent with moderate (0.3-0.5 μg/g ww), high (0.5-2 μg/g ww), and severe risk (≥2 μg/g ww). Most of the fish with Hg concentrations in these risk categories were long-lived predators (e.g., non-anadromous Arctic char, northern pike, lake trout, Greenland halibut, Greenland shark). We also, for the first time, conducted a risk assessment of Arctic marine and freshwater invertebrates to evaluate the potential for Hg effects at lower trophic levels and to support risk assessment for Arctic fish. The vast majority (90%) of site-specific Hg or methylmercury (MeHg) concentrations in taxa of marine and freshwater invertebrates (n = 321) were < 0.5 μg/g dw, which is well below critical body residues of Hg in aquatic invertebrates associated with acute and sublethal effects determined in laboratory dosing studies. As the screening-level approach we carried out in the present study is not indicative of actual effects, more studies which directly evaluate the effects of Hg exposure in Arctic fish species are needed. The information here will be of use to Article 22 (Effectiveness Evaluation) of the Minamata Convention.

Trophic ecology of northern gannets Morus bassanus highlights the extent of isotopic niche overlap with other apex predators within the Bay of Biscay

Understanding the linkages within complex and evolving marine food webs is essential to comprehend marine ecosystem structure and dynamics. Carbon (δ13C) and nitrogen (δ15N) stable isotope signatures are recognized to be powerful descriptors of the trophic ecology and trophic relationships within marine communities. Apex predators such as seabirds can influence the structure of communities by predating in lower trophic levels. They also convey information both over a range of spatial and temporal scales due to their high mobility and longevity, respectively. For this reason, here, we studied the trophic ecology of northern gannets and the extent of niche overlap with other apex predators within the Bay of Biscay (North-East Atlantic), a key feeding area for numerous predatory species. Mixing models indicated that northern gannets fed primarily on European anchovy Engraulis encrasicolus and on a mixed group composed of European sardine Sardina pilchardus, European sprat Sprattus sprattus, juvenile hake Merluccius merluccius, Atlantic mackerel Scomber scombrus and Atlantic horse mackerel Trachurus trachurus. Within the apex predator community, the northern gannets trophic niche overlapped the most with common guillemots Uria aalge (15.58%, based on Stable Isotope Bayesian Ellipses (SIBER)) and overlapped to a lesser extent with cetacean species occupying shelf habitats (i.e., the harbour porpoise Phocoena phocoena (9.99%) and the short-beaked common dolphin Delphinus delphis (10.37%)). Overall, the overlap found was moderate indicating trophic similarities and dissimilarities between these species. Information on trophic interactions between co-existing species is necessary for holistic environmental management, particularly in areas where several megafauna species share their foraging grounds with fisheries activity.

Introduction to the Collection: Climate Change, Insect Pests, and Beneficial Arthropods in Production Systems.

Climate change is expected to alter pressure from insect pests and the abundance and effectiveness of insect pollinators across diverse agriculture and forestry systems. In response to warming, insects are undergoing or are projected to undergo shifts in their geographic ranges, voltinism, abundance, and phenology. Drivers include direct effects on the focal insects and indirect effects mediated by their interactions with species at higher or lower trophic levels. These climate-driven effects are complex and variable, sometimes increasing pest pressure or reducing pollination and sometimes with opposite effects depending on climatic baseline conditions and the interplay of these drivers. This special collection includes several papers illustrative of these biological effects on pests and pollinators. In addition, in response to or anticipating climate change, producers are modifying production systems by introducing more or different crops into rotations or as cover crops or intercrops or changing crop varieties, with potentially substantial effects on associated insect communities, an aspect of climate change that is relatively understudied. This collection includes several papers illustrating these indirect production system-level effects. Together, biological and management-related effects on insects comprise the necessary scope for anticipating and responding to the effects of climate change on insects in agriculture and forest systems.

Target Strength Measurements of Free-Swimming Sandeel Species, Ammodytes spp., in a Large Indoor Experimental Aquarium

The sandeel species (Ammodytes spp.) occupy a critical ecological position in connecting lower trophic levels to higher ones. However, they are strongly affected by the marine environment and their catch rates are trending downward. In this study, the target strength (TS) of sandeel species was measured in free-swimming specimens using a split-beam quantitative echo sounder with 38 and 120 kHz frequencies in a physically controlled environment. Parameters a and b used in the estimated TSmean–fork length (FL: 13.5–21.5 cm) equation were 53.7 and −124.3 dB at 38 kHz, and 71.3 and −153.2 dB at 120 kHz, respectively. The TS of the sandeel species were not proportional to the square of the FL but increased relatively rapidly with increasing body size. In addition, the mean and standard deviation of the swimming angle for the sandeel species from the acoustic data at 120 kHz were −2.2° and 7.7°, respectively, and most were in the −30° to 30°, range. Furthermore, TS was stronger at 38 kHz than at 120 kHz for all FL classes. The use of such frequency characteristics could facilitate the discrimination of fish species in the field and the sustainable assessment of sandeel species stocks.

How does bivalve size influence microplastics accumulation?

Microplastics (wasted plastic particles < 5 mm in diameter) are ubiquitously distributed in the marine environment. Filter-feeding and low trophic level bivalves are vulnerable to microplastics accumulation from the surrounding depositional environment, thereby threatening both ecological health and human food safety. Microplastics had been detected in lots of coastal Bivalvia species. However, the influence of biological morphology on the mechanism of microplastics accumulation is not clear. There is also a knowledge gap of which species are preferred for commercial consumption, which creates loopholes in risk identification for food safety. A survey on a commercial popular eaten but under-researched hard clam (Meretrix meretrix; Linnaeus, 1758) from a famous fishery port city in southern China was carried out to comprehensively analyze shell size influence on microplastics accumulation in bivalves and consequently, human intake risk via bivalve consumption. Detected microplastics count in per individual (MCI) was 24.64 ± 19.11 items · individual−1, and microplastics count per gram (MCG; wet weight with shell) was 0.66 ± 0.54 items · g−1. When the shell width grew by 1 mm, MCI increased by 1.01 times, but MCG decreased by 0.97 times. Dominant microplastics characteristics found in this study was fiber and fragment. Sizes ranged from 25 to 150 μm, and dark colors (black, red, and blue) were found. The mostly common polymers were polyethene (PE, 40%), polyethylene terephthalate (PET, 23%), and polypropylene (PP, 18%). Estimated annual intake (EAI) risk of microplastics via hard clam consumption by residents was 6652.26 ± 5327.28 items · year −1 · person −1. The microplastics in bivalves and EAI was relatively high. When shell width grew by 1 mm, EAI decreased by 0.97 times. Therefore, eating a fixed amount of larger hard clams with a relatively low amount of microplastics can reduce EAI risk for consumers. A systematic investigation of emission sources along main coast, where bivalve production is prominent will be useful for food safety control in this region.

Microplankton Interactions with Decadal-Scale Nutrient Enrichment in a Deep Estuary, with Implications for Eutrophication—Related Ecosystem Stressors

Long-term (decadal) records of microplankton provide insights into how lower trophic levels of coastal ecosystems respond to nutrient enrichment, over and above shorter-term variability. We used a 15-year seasonal census in the Firth of Thames, a deep, nutrient-enriched estuary in northeastern Aotearoa/New Zealand, to determine microplankton responses to enrichment. Kendall trend analyses showed that dissolved inorganic nitrogen (DIN) and dissolved organic nitrogen were enriched by 99% and 34%, respectively, over 15 years, while phosphorus changed little. Larger phytoplankton (> 2 µm) increased by 46%, including 57% increases by diatoms (mainly large centrics with 93% increase) and nanoflagellates (151% increase). Dinoflagellates decreased by 46%, such that the community shifted from dinoflagellate to diatom/nanoflagellate dominance. Within phytoplankton ≤ 2 µm, picoprokaryotes increased by 369%, while picoeukaryotes changed little. Among microheterotrophs (< 200 µm), bacteria increased by 89%, and small oligotrichs increased by 53%. Trend analyses and multivariate general additive modelling showed that microplankton biomass responded primarily to increased DIN over the 15-year period and secondarily to stratification variation at shorter time scales. The changed biomasses and community composition are explained as responses to increased N:P and food-web interactions. Deleterious changes included increased toxic Pseudo-nitzschia abundance and potentially reduced nutritional quality of the phytoplankton community for grazers. The increased N and larger diatoms indicated potential for increased deposition to sediments, possibly explaining previous observations of lowered denitrification in the Firth during the time series period. The results indicated a continuation of enrichment the Firth has received over decades, with implications for expression of ecosystem stressors of acidification and hypoxia.

Role of estuarine habitats for the feeding ecology of the European eel (Anguilla anguilla L.).

This study aims to characterize and compare the feeding ecology of the European eels (Anguilla anguilla L.) during the continental phase (i.e. yellow and silver) along a salinity gradient (i.e. lower, middle and upper) in six northern France estuaries (i.e. brackish water). The diet and stable isotopic (i.e. δ15N and δ13C values) compositions of eels collected with a fyke net in six estuaries (Slack, Wimereux, Liane, Canche, Authie and Somme estuaries) located along the French coast of the eastern English Channel per season over a year were described by combining gut content and stable isotope analyses. Eel guts were dominated by typical BW prey, Malacostraca and Actinopterygii (54% and 40%, respectively), with the gammare Gammarus zaddachi and the green crab Carcinus maenas (38% and 14%, respectively), and smaller yellow eels of A. anguilla and juvenile European flounder, Platichthys flesus (19% and 14%, respectively) being the most frequently found in their guts. The δ13C values of a majority of eels confirmed the sea- and brackish water-specific carbon resources. Dietary and isotopic niche revealed no clear change between total length, silvering stages and seasons, but a significant difference between salinity gradients and estuaries. Eels δ13C values showed significant enrichment from upper to lower along the estuaries while the δ15N values showed an inverse effect, with the lowest values in the lower part and highest in the upper part. Higher variability in δ13C values in larger estuaries suggested that eels feed on a wide range of food sources than in smaller estuaries. While eels in the smaller estuaries fed mainly on Actinopterygii prey, eels in the larger ones had a lower trophic level (i.e. δ15N values) and fed mainly on Malacostraca prey. This spatial difference in dietary and isotopic niche is discussed in relation to biological structure of eel and environmental variables.

Microplastic exposure across trophic levels: effects on the host–microbiota of freshwater organisms

BackgroundMicroplastics are a pervasive pollutant widespread in the sea and freshwater from anthropogenic sources, and together with the presence of pesticides, they can have physical and chemical effects on aquatic organisms and on their microbiota. Few studies have explored the combined effects of microplastics and pesticides on the host–microbiome, and more importantly, the effects across multiple trophic levels. In this work, we studied the effects of exposure to microplastics and the pesticide deltamethrin on the diversity and abundance of the host–microbiome across a three-level food chain: daphnids–damselfly–dragonflies. Daphnids were the only organism exposed to 1 µm microplastic beads, and they were fed to damselfly larvae. Those damselfly larvae were exposed to deltamethrin and then fed to the dragonfly larvae. The microbiotas of the daphnids, damselflies, and dragonflies were analyzed.ResultsExposure to microplastics and deltamethrin had a direct effect on the microbiome of the species exposed to these pollutants. An indirect effect was also found since exposure to the pollutants at lower trophic levels showed carry over effects on the diversity and abundance of the microbiome on higher trophic levels, even though the organisms at these levels where not directly exposed to the pollutants. Moreover, the exposure to deltamethrin on the damselflies negatively affected their survival rate in the presence of the dragonfly predator, but no such effects were found on damselflies fed with daphnids that had been exposed to microplastics.ConclusionsOur study highlights the importance of evaluating ecotoxicological effects at the community level. Importantly, the indirect exposure to microplastics and pesticides through diet can potentially have bottom-up effects on the trophic webs.

Habitat complexity mediates spatiotemporal niche partitioning among native and invasive seed predators

Red imported fire ants dominate certain food webs in North America due to their omnivorous and aggressive feeding behavior. Structural habitat complexity can mediate effects of invasive predators on native insects, by either facilitating or tempering antagonistic interactions, with potential consequences at lower trophic levels. Along a gradient of habitat complexity, we evaluated how refuge affects the activity and foraging behavior of fire ants and native invertebrate seed predators using video surveillance, and then determined their consumption of pigweed seeds in seed removal assays. Fire ants dominated seed predation in our system, and structural complexity increased both their activity and seed removal, while reducing that of native seed predators. In structurally simple habitats with high sun exposure, fire ant activity was restricted to the evening when temperatures were milder, while native seed predators foraged during the heat of the day, possibly to avoid antagonistic interactions with fire ants. In relatively shaded, structurally complex habitat, the active foraging period for fire ants expanded earlier into the heat of the day, and almost totally overlapped with that of native seed predators. Our data suggest that structural refuge may facilitate antagonism and site/resource domination by fire ants.

Marine gastropods at higher trophic level show stronger tolerance to ocean acidification

Climate change and anthropogenic activities are producing a range of new selection pressures, both abiotic and biotic, on marine organisms. Although it is known that climate change can differentially affect fitness‐related traits at different trophic levels of the food web, it is not clear if different trophic levels will respond via phenotypic plasticity in the form of maintenance of phenotypes in the face of abiotic and biotic environmental stress similarly. To answer this question, we combined a mesocosm experiment (120 days) using a food web comprising three gastropod species from two trophic levels (grazers and meso‐predators) and a meta‐analysis including 38 studies to address whether different trophic levels exhibit similar phenotypic responses to abiotic and biotic variables. Abiotic (ocean acidification) and biotic (predation) stress significantly influenced body mass, shell mass, shell thickness and shell strength in both grazers and meso‐predators in the mesocosm experiment, with the magnitude of OA effects greater on the meso‐predator than the grazers; a result supported by the meta‐analysis. In contrast, both mesocosm experiment and meta‐analysis found that predation risk induced stronger responses in shell morphology for grazers compared to meso‐predators. Together, our findings indicate that higher trophic level species are better able to maintain aspects of their phenotype under OA, suggesting that they may show greater tolerance to climate change effects in general, while lower trophic levels express higher levels of plastic inducible defences to maintain function when under threat of predation. By using marine snails as a model, our study provides new knowledge for understanding how changing environmental conditions may alter biological interactions, and increases our understanding of how climate change may affect ecological communities in which gastropods play a key role.

Long-term, climate-driven phenological shift in a tropical large carnivore

Understanding the degree to which animals are shifting their phenology to track optimal conditions as the climate changes is essential to predicting ecological responses to global change. Species at low latitudes or high trophic levels are theoretically expected to exhibit weaker phenological responses than other species, but limited research on tropical systems or on top predators impedes insight into the contexts in which these predictions are upheld. Moreover, a lack of phenological studies on top predators limits understanding of how climate change impacts propagate through entire ecosystems. Using a 30-y dataset on endangered African wild dogs (Lycaon pictus), we examined changes in reproductive phenology and temperatures during birthing and denning over time, as well as potential fitness consequences of these changes. We hypothesized that their phenology would shift to track a stable thermal range over time. Data from 60 packs and 141 unique pack-years revealed that wild dogs have delayed parturition by 7 days per decade on average in response to long-term warming. This shift has led to temperatures on birthing dates remaining relatively stable but, contrary to expectation, has led to increased temperatures during denning periods. Increased denning temperatures were associated with reduced reproductive success, suggesting that a continued phenological shift in the species may become maladaptive. Such results indicate that climate-driven shifts could be more widespread in upper trophic levels than previously appreciated, and they extend theoretical understanding of the species traits and environmental contexts in which large phenological shifts can be expected to occur as the climate changes.

Differences in Trophic and Community Structure of Kelp Forest Fishes Inside and Outside of Three Long-standing MPAs in the Southern California Bight

In many marine ecosystems worldwide, overfishing is a prominent cause in removing large predatory fishes from ecological communities. Fluctuation in the abundance of higher trophic level species can transform an ecosystem's structure and function by altering trophic interactions through density-mediated top-down control. Accordingly, understanding the extent to which humans indirectly influence a community through altering predator abundance is of critical importance. Thus, during the summer of 2013 and 2014 the impacts of fishing on the trophic structure of kelp forest fishes were examined within the Southern California Bight. In 2013, we tested whether decreased abundance through fishing for higher trophic level predators relieves predation pressure on lower trophic level prey. Using a combination of underwater survey techniques, density (no. fish/100 m2) and biomass (g/100 m2) of conspicuous fish species were sampled inside and outside of three long-standing Marine Protected Areas (MPAs) off La Jolla, Santa Catalina Island, and Anacapa Island, California. We found that the secondary carnivore and herbivore/omnivore trophic levels were significantly lower in density and biomass outside of MPAs. Inversely, the primary carnivore trophic level biomass was higher outside of MPAs. At the species level, we observed a lower abundance outside MPAs of large kelp bass (>25 cm) and higher densities of potential prey, kelp perch. Other primary carnivore fishes (blacksmith and señorita) showed a non-significant trend of higher biomass outside MPAs. Our results provide evidence of trophic level changes due to fishing pressure and provide support for a possible weakening of top-down control on specifically the kelp perch population through the removal of large kelp bass outside MPAs. The removal or recovery of predators can greatly influence an ecosystem. As more recent studies suggest that indirect community effects of fishing and protection can take up to decades to detect, it is necessary to document the continued changes on the structure, function, and dynamics of the kelp forests and rocky reefs off southern California.

Evidence for trophic niche partitioning among three temperate gorgonian octocorals

Trophic niche theory predicts that species in competition for a limiting resource will evolve adaptations allowing them to consume alternative resources and occupy new niche space. Trophic niche partitioning is often identified by differences in the morphology of feeding structures across species; however, these differences may not always be readily observable. Due to their constrained polyp morphology, octocorals are often viewed a single functional group that contributes to benthic-pelagic coupling by feeding opportunistically on available particles. To test the hypothesis that sympatric gorgonians share the same trophic niche, feeding selectivity of three gorgonian species (Leptogorgia virgulata, Muricea pendula, and Thesea nivea) was compared using a combination of flume experiments and stable isotope analysis. The tentacle length and polyp surface area of L. virgulata and T. nivea were also measured and compared. In flume experiments, clearance of rotifers (“typical” zooplankton) and a mixture of cultured phytoplankton indicated that L. virgulata and T. nivea fed on zooplankton and not phytoplankton. Stable isotope values for all three species are consistent with distinct trophic niches, with M. pendula occupying a lower trophic level. Thesea nivea was found to have significantly larger polyp surface area and tentacle length; however, this did not appear to explain observed trophic differences. The results of this study provide evidence for niche partitioning, but future work is required to better understand the mechanism behind this divergence.

Network hierarchy and pattern recovery in directed sparse Hopfield networks.

Many real-world networks are directed, sparse, and hierarchical, with a mixture of feedforward and feedback connections with respect to the hierarchy. Moreover, a small number of master nodes are often able to drive the whole system. We study the dynamics of pattern presentation and recovery on sparse, directed, Hopfield-like neural networks using trophic analysis to characterize their hierarchical structure. This is a recent method which quantifies the local position of each node in a hierarchy (trophic level) as well as the global directionality of the network (trophic coherence). We show that even in a recurrent network, the state of the system can be controlled by a small subset of neurons which can be identified by their low trophic levels. We also find that performance at the pattern recovery task can be significantly improved by tuning the trophic coherence and other topological properties of the network. This may explain the relatively sparse and coherent structures observed in the animal brain and provide insights for improving the architectures of artificial neural networks. Moreover, we expect that the principles we demonstrate here, through numerical analysis, will be relevant for a broad class of system whose underlying network structure is directed and sparse, such as biological, social, or financial networks.

Atlantic Salmon (Salmo salar) Performance Fed Low Trophic Ingredients in a Fish Meal and Fish Oil Free Diet.

To evolve fish farming in an eco-efficient way, feed production must become less dependent on forage fish-based ingredients and make more use of low trophic level organisms, including microalgae, higher plants, as filter feeding organisms and other ingredients with low competition to established food value chains. Diets nearly free of fish meal and fish oil are not a novelty but are often composed of complex mixtures, containing supplements to meet the farmed animal’s nutritional requirements. Sustaining a growing aquaculture production, maintaining at the same time fish health, welfare, and profitability, and meeting strict environmental and food safety demands, is challenging and requires new technologies, great investments, and more knowledge. A benchmarking feeding trial was performed to demonstrate the main effects of four low trophic raw materials on Atlantic salmon (Salmo salar) growth, metabolism, skin health and fillet quality. To this end, a diet was produced to contain commercially relevant levels of fresh high quality organic FM and FO and was used as a control in the trial (FMFO). Heterotrophically produced Schizochytrium limacinum biomass was used to replace organic FO (HM diet). Spray dried cell wall disrupted biomass of the phototrophically cultured diatom Phaeodactylum tricornutum replaced partly FM and FO (PM diet). Black soldier fly (Hermetia illucens) larvae meal and tunicate (Ciona intestinalis) meal, were used to produce the diets BSFL and TM, respectively, replacing large parts of FM as compared to the FMFO. A fifth test diet was produced combining all test raw materials and removing all FM and FO (0FM0FO diet). All test ingredients were well accepted sustaining high growth rates (TGC values near 4) and feed efficiency (FCR values below 0.9) in salmon showing good gut health and normal metabolic responses. However, none of the treatments reached the growth performance of FMFO. Additional differences between test and control treatments were identified in dietary nutrient apparent digestibility, fish biometrics, blood metabolites and fillet and skin composition. Extensive raw material and dietary chemical characterisation was performed to provide insight on potential shortcomings in the novel low trophic level ingredients which can possibly be overcome combining complementary raw materials.