Low-level Mechanisms Research Articles

Looks like home: numerosity, but not spatial frequency guides preference in zebrafish larvae (Danio rerio)

Despite their young age, zebrafish larvae have a well-developed visual system and can distinguish between different visual stimuli. First, we investigated if the first visual surroundings the larvae experience during the first days after hatching shape their habitat preference. Indeed, these animals seem to “imprint” on the first surroundings they see and select visual stimuli accordingly at 7 days post fertilization (dpf). In particular, if zebrafish larvae experience a bar background just after hatching, they later on prefer bars over white stimuli, and vice versa. We then used this acquired preference for bars to investigate innate numerical abilities. We wanted to specifically test if the zebrafish larvae show real numerical abilities or if they rely on a lower-level mechanism—i.e. spatial frequency—to discriminate between two different numerosities. When we matched the spatial frequency in stimuli with different numbers of bars, the larvae reliably selected the higher numerosity. A previous study has ruled out that 7 dpf zebrafish larvae use convex hull, cumulative surface area and density to choose between two numerosities. Therefore, our results indicate that zebrafish larvae rely on real numerical abilities rather than other cues, including spatial frequency, when spontaneously comparing two sets with different numbers of bars.

Multisensory Calibration: A Variety of Slow and Fast Brain Processes Throughout the Lifespan.

From before we are born, throughout development, adulthood, and aging, we are immersed in a multisensory world. At each of these stages, our sensory cues are constantly changing, due to body, brain, and environmental changes. While integration of information from our different sensory cues improves precision, this only improves accuracy if the underlying cues are unbiased. Thus, multisensory calibration is a vital and ongoing process. To meet this grand challenge, our brains have evolved a variety of mechanisms. First, in response to a systematic discrepancy between sensory cues (without external feedback) the cues calibrate one another (unsupervised calibration). Second, multisensory function is calibrated to external feedback (supervised calibration). These two mechanisms superimpose. While the former likely reflects a lower level mechanism, the latter likely reflects a higher level cognitive mechanism. Indeed, neural correlates of supervised multisensory calibration in monkeys were found in higher level multisensory cortical area VIP, but not in the relatively lower level multisensory area MSTd. In addition, even without a cue discrepancy (e.g., when experiencing stimuli from different sensory cues in series) the brain monitors supra-modal statistics of events in the environment and adapts perception cross-modally. This too comprises a variety of mechanisms, including confirmation bias to prior choices, and lower level cross-sensory adaptation. Further research into the neuronal underpinnings of the broad and diverse functions of multisensory calibration, with improved synthesis of theories is needed to attain a more comprehensive understanding of multisensory brain function.

Clinical and Laboratory Presentation and Underlying Mechanism in Patients with Low VWF.

Low von Willebrand factor (VWF) refers to subjects with plasma levels of 30 to 50 IU/dL. The mechanism of low VWF is poorly understood. We chose to determine the clinical presentation, laboratory phenotype, and underlying mechanisms of low VWF. We included 250 patients characterized with low VWF. The International Society on Thrombosis and Haemostasis Bleeding Assessment Tool (ISTH-BAT) was used to assess clinical symptoms. To determine the underlying mechanisms of low VWF, we used as markers the VWF propeptide (VWFpp) assay and FVIII:C/VWF:Ag ratio for VWF synthesis and the VWFpp/VWF:Ag ratio for VWF clearance. Results were compared with those of 120 healthy controls. Cases with abnormal screening tests were further evaluated for coagulation factor levels and platelet disorders. The median age of the cohort was 35 years (range 3-85), 21% were children (n = 53), 34% were adult males (n = 85), and 45% (n = 112) were adult females. According to the ISTH-BAT, abnormal bleeding was found in 35% of children, 47% of males, and 49% of females. No association was found between VWF activity levels and ISTH-BAT. Patients showed an overall decreased VWF synthesis/secretion and an enhanced VWF clearance was identified in 33% of them. In 89 patients (36%), there were other hemostasis-related defects, but there was no difference in the ISTH-BAT between the two groups. Our findings indicate that reduced VWF synthesis/secretion and enhanced VWF clearance are major mechanisms of low VWF levels. Patients with low VWF have significant bleeding manifestations. While other hemostasis defects occurred together with low VWF, this combination did not exacerbate clinical symptoms.

Task feedback suggests a post-perceptual component to serial dependence.

Decisions across a range of perceptual tasks are biased toward past stimuli. Such serial dependence is thought to be an adaptive low-level mechanism that promotes perceptual stability across time. However, recent studies suggest post-perceptual mechanisms may also contribute to serially biased responses, calling into question a single locus of serial dependence and the nature of integration of past and present sensory inputs. We measured serial dependence in the context of a three-dimensional (3D) motion perception task where uncertainty in the sensory information varied substantially from trial to trial. We found that serial dependence varied with stimulus properties that impact sensory uncertainty on the current trial. Reduced stimulus contrast was associated with an increased bias toward the stimulus direction of the previous trial. Critically, performance feedback, which reduced sensory uncertainty, abolished serial dependence. These results provide clear evidence for a post-perceptual locus of serial dependence in 3D motion perception and support the role of serial dependence as a response strategy in the face of substantial sensory uncertainty.

The impact of the cardiovascular component and somatic mutations on ageing.

Mechanistic insight into ageing may empower prolonging the lifespan of humans; however, a complete understanding of this process is still lacking despite a plethora of ageing theories. In order to address this, we investigated the association of lifespan with eight phenotypic traits, that is, litter size, body mass, female and male sexual maturity, somatic mutation, heart, respiratory, and metabolic rate. In support of the somatic mutation theory, we analysed 15 mammalian species and their whole-genome sequencing deriving somatic mutation rate, which displayed the strongest negative correlation with lifespan. All remaining phenotypic traits showed almost equivalent strong associations across this mammalian cohort, however, resting heart rate explained additional variance in lifespan. Integrating somatic mutation and resting heart rate boosted the prediction of lifespan, thus highlighting that resting heart rate may either directly influence lifespan, or represents an epiphenomenon for additional lower-level mechanisms, for example, metabolic rate, that are associated with lifespan.

A Case for Graphics-Driven Query Processing

Over the past decade, the database research community has directed considerable attention towards harnessing the power of GPUs in query processing engines. The proposed techniques have primarily focused on devising customized low-level mechanisms that utilize the raw hardware parallelism provided abundantly by GPU compute kernels. In this paper, we advocate a radically different approach - instead of dealing directly with hardware idiosyncrasies, to leverage the well-established graphics pipeline architecture baked into the GPU hardware. A variety of advantages accrue from this high-level abstraction: (a) Extracting the power of GPUs is outsourced to highly-optimized graphics drivers, thereby providing hardware-consciousness for free; (b) Query processing becomes agnostic to changes in GPU architectures (e.g. integrated vs discrete) and vendors, requiring only a change of drivers; (c) Contemporary graphics APIs also support a compute element, facilitating query operator designs that seamlessly straddle the compute and graphics worlds. As a proof of concept of the above vision, we implement here the workhorse Join and GroupBy operators using core graphics primitives. These implementations, based on the Vulkan API, have been evaluated over large benchmark databases on vanilla hybrid computing platforms. The experimental results indicate both substantive performance benefits (typically, around 2X faster) over existing approaches, as well as auto-tuned portability to new hardware platforms.

Understanding language processing in variable populations on their own terms: Towards a functionalist psycholinguistics of individual differences, development, and disorders.

Classic psycholinguistics seeks universal language mechanisms for all people, emphasing the "modal" listener: hearing, neurotypical, monolingual, young adults. Applied psycholinguistics then characterizes differences in terms of their deviation from modal. This mirrors naturalist philosophies of health which presume a normal function, with illness as a deviation. In contrast, normative positions argue that illness is partially culturally derived. It occurs when a person cannot meet socio-culturally defined goals, separating differences in biology (disease) from socio-cultural function (illness). We synthesize this with mechanistic functionalist views in which language emerges from diverse lower level mechanisms with no one-to-one mapping to function (termed the functional mechanistic normative approach). This challenges primarily psychometric approaches-which are culturally defined-suggesting a process-based approach may yield more insight. We illustrate this with work on word recognition across multiple domains: cochlear implant users, children, language disorders, L2 learners, and aging. This work investigates each group's solutions to the problem of word recognition as interesting in its own right. Variation in process is value-neutral, and psychometric measures complement this, reflecting fit with cultural expectations (disease vs. illness). By examining variation in processing across people with a variety of skills and goals, we arrive at deeper insight into fundamental principles.

Experimental evidence for involvement of monocular channels in mental rotation.

According to the prevailing view, cognitive processes of mental rotation are carried out by visuospatial perceptual circuits located primarily in high cortical areas. Here, we examined the functional involvement of (mostly subcortical) monocular channels in mental rotation tasks. Images of two rotated objects (0°, 50°, 100°, or 150°; identical or mirrored) were presented either to one eye (monocular) or segregated between the eyes (interocular). The results indicated a causal role for low monocular visual channels in mental rotation: Response times for identical ("same") objects at high angular disparities (100°, 150°) were shorter when both objects were presented to a single eye than when each object was presented to a different eye. We suggest that mental rotation processes rely on cortico-subcortical loops that support visuospatial perception. More generally, the findings highlight the potential contribution of lower-level mechanisms to what are typically considered to be high-level cognitive functions, such as mental representation.

Dogs’ ability to follow temporarily invisible moving objects: the ability to track and expect is shaped by experience

Visually tracking a moving object, even if it becomes temporarily invisible, is an important skill for animals living in complex environments. However, this ability has not been widely explored in dogs. To address this gap of knowledge and understand how experience contributes to such ability, we conducted two experiments using a violation of expectation paradigm. Dogs were shown an animation of a ball moving horizontally across a screen, passing behind an occluder, and reappearing with a timing that was faster, slower or congruent with its initial speed. In the first experiment, dogs (N = 15) were exposed to the incongruent conditions without prior experience; while in the second experiment, dogs (N = 37) were preliminarily exposed to the congruent stimulus. Dogs of the first experiment did not exhibit a surprise effect, as measured by latency to look away from the expected stimulus presentation area, in response to the incongruent conditions, suggesting they had not formed an expectation about the timing of reappearance. However, their latency to orient towards the reappearing ball depended on the condition, suggesting they were able, to some extent, to visually keep track of the stimulus’ trajectory. Dogs of the second experiment were surprised when the ball stayed behind the occluder longer than expected, but showed no difference in latency to orient across conditions. This suggests they had overcome the visual tracking mechanism and had formed expectations about the timing of reappearance. In conclusion, dogs seem to use a low-level mechanism to keep visual track of a temporarily disappearing moving object, but experience is required to make expectation about its trajectory.

Antioxidants (selenium and garlic) alleviated the adverse effects of tramadol on the reproductive system and oxidative stress markers in male rabbits

Tramadol has been used by millions of patients as an analgesic drug to relief the severe pain caused by cancers and other diseases. The current study aimed to investigate the protective effects of antioxidants (garlic and selenium) against the toxic effects of tramadol on semen characteristics, steroid hormones, the protein expressions of different cytochrome P450 isozymes [CYP 21A2, CYP 19, and 11A1], and on antioxidant enzyme activities in testes of rabbits. Western immunoblotting, spectrophotometric, and histological methods were used in this study. Tramadol (1.5 mg/kg body weight) was administered orally to male rabbits for up to three months (three times/week), and after pretreatment of rabbits with garlic (800 mg/kg) and/or selenium (1 mg/kg body weight) by 2 h. The present study showed that motilities, semen volumes, morphologies, sperm counts, testosterone, and estrogen levels were significantly decreased after 4, 8, and 12 weeks of tramadol treatment. In addition, the protein expressions of CYP 21A2, CYP 19, and 11A1 were down-regulated in the testes of the tramadol-treated rabbits. On the other hand, pretreatment of rabbits with garlic, selenium, and/or garlic-selenium for 2 h before administration of tramadol restored the downregulated CYP 21A2 and 11A1 to their normal levels after 12 weeks of tramadol treatment. Activities of antioxidant enzymes including glutathione reductase, glutathione peroxidase, glutathione S-transferase, catalase, superoxide dismutase, and levels of glutathione were inhibited in the testes of tramadol-treated rabbits. On the other hand, free radical levels were significantly increased in the testes of tramadol-treated rabbits for 12 weeks. Interestingly, such changes in the activities of antioxidant enzymes as well as free radical levels caused by tramadol were restored to their normal levels in the rabbits pretreated with either selenium, garlic, and/or their combination. Histopathological investigations showed that tramadol caused substantial vacuolization with the presence of damaged immature spermatozoid in the testes. However, selenium and garlic treatments showed an increase in healthy sperm production with normal mitotic and meiotic divisions. The present study illustrated for the first time the mechanisms of low steroid hormone levels in the testes of tramadol-treated rabbits which could be due to the downregulation of CYPs proteins, induction of oxidative stress, and inhibition of antioxidant enzyme activities. In addition, the present data showed that such toxic effects of tramadol were attenuated and restored to their normal levels after pretreatment of rabbits with garlic, selenium, and/or their combination. This finding may pave the way for a new approach to reducing the toxicity of tramadol.

Both sheep and goats can solve inferential by exclusion tasks.

Despite the domestication of sheep and goats by humans for several millennia, we still lack comparative data on their cognitive capacity. Comparing the cognitive skills of farm animals can help understand the evolution of cognition. In this study, we compared the performances of sheep and goats in inference by exclusion tasks. We implemented two tasks, namely a cup task and a tube task, to identify whether success in solving the task could be attributed to either low-level mechanisms (avoiding the empty location strategy) or to deductive reasoning (if two possibilities A and B, but not A, then it must be B). In contrast to a previous study comparing goats and sheep in a cup task, we showed that both species solved the inferential condition with high success rates. In the tube task, performances could not be explained by alternative strategies such as avoiding the empty tube or preferring the bent tube. When applying a strict set of criteria concerning responses in all conditions and controlling for the potential effects of experience, we demonstrate that two individuals, a goat and a sheep, fulfil these criteria. This suggests that sheep and goats are able to make inferences based on deductive reasoning.

Motor Simulation and Ostensive-Inferential Communication

The ostensive-inferential model is a model of communication, an alternative to the code model of communication, based on pragmatic competence: it explains human communication in terms of expression and recognition of informative and communicative intentions, founding comprehension on the distinction between literal meaning and the speaker’s meaning. Through informative intentions we try to make evident the content of a message to a receiver, or to make evident what we want to communicate to him/her: communicative intentions are used to make evident the very fact that we intend to communicate. One hypothesis is that ostensive-inferential communication is what makes human language possible. Since an extensive literature has highlighted the role of the Theory of Mind in ostensive-inferential communication, this hypothesis fits with the idea that a mechanism for mentalizing underlies human communication. The aim of the present paper is to stress the role of lower-level mechanisms, specifically of motor simulation, in the recognition of informative and communicative intentions, in order to outline an embodied account of ostensive communication. Specifically, the hypothesis is that this process is involved in language acquisition during development, and that it plays a role in the associative learning process involved in language acquisition during childhood. To this aim, in future research it may be useful to test the involvement of motor simulation (specifically, phono-articulatory and semantic) in the recognition of informative and communicative intentions in toddlers. Since some models of language evolution focus on the role of motor simulation, a supplementary goal is to deepen its role in the biological evolution of language, focusing on the specific link between motor simulation and intentions in the framework of ostensive-inferential model.

Fictional mechanism explanations: clarifying explanatory holes in engineering science

This paper discusses a class of mechanistic explanations employed in engineering science where the activities and organization of nonstandard entities (voids, cracks, pits…) are cited as core factors responsible for failures. Given the use of mechanistic language by engineers and the manifestly mechanistic structure of these explanations, I consider several interpretations of these explanations within the new mechanical framework (among others: voids should be considered as shorthand expressions for other entities, voids should be reduced to lower-level mechanisms, or the explanations are simply abstract mechanistic explanations). I argue that these interpretations fail to solve several philosophical problems and propose an account of fictional mechanism explanations instead. According to this account, fictional mechanism explanations provide descriptions of fictional mechanisms that enable the tracking of counterfactual dependencies of the physical system they model by capturing system constraints. Engineers use these models to learn about and understand properties of materials, to build computational simulations of their behaviour, and to design new materials.

Direct and Indirect Effects of Blood Levels of Omega-3 and Omega-6 Fatty Acids on Reading and Writing (Dis)Abilities.

The purpose of the present study was to investigate whether there are associations between polyunsaturated fatty acid (PUFA) blood levels, reading/writing performance and performance in neuropsychological tasks. Moderate to strong correlations were found between PUFA levels (specific omega-6/omega-3 ratios) and reading/writing abilities, and the former and neuropsychological test scores. Mediation models analyzing the direct and indirect effects of PUFA on reading and writing scores showed that the effects of fatty acids on learning measures appear to be direct rather than mediated by the investigated visual and auditory neuropsychological mechanisms. The only significant indirect effect was found for the difference in accuracy between the left and right visual fields in visual-spatial cueing tasks, acting as a mediator for the effect of PUFA ratios on writing accuracy. Regression analyses, by contrast, confirmed the roles of phonological awareness and other visual attentional factors as predictors of reading and writing skills. Such results confirm the crucial role of visual-spatial attention mechanisms in reading and writing, and suggest that visual low-level mechanisms may be more sensitive to the effects of favorable conditions related to the presence of higher omega-3 blood levels.

Mechanisms of Short-Duration Heavy Rainfall in the Western Pacific Subtropical High Area: An Analysis of Two Rainstorms of 2018 in Hunan Province, China

ABSTRACT This study examines two short-duration heavy rainfall cases of 2018 in Hunan province, China, using observations and the NCEP FNL analyses. Short-duration heavy rainfall occurring in the western Pacific subtropical high (WPSH) area is one of the major natural hazards during spring and summer over the middle reaches of the Yangtze River basin. Rainstorms in the two cases selected showed high echo-top height but low storm centroid elevation, resembling the “low-echo centroid” structure. Weak vertical shear was observed in the mid-lower troposphere, thereby leading to a short life cycle of storms. Before the heavy rainfall events, in addition to substantial changes in convective available potential energy (CAPE) and convective inhibition (CIN), both cases were characterized by a lack of troughs and jet streams in the middle and upper troposphere over the middle reaches of the Yangtze River basin. A proper configuration of the WPSH extending to the middle reaches of the Yangtze River basin along with low-level synoptic systems (e.g. a surface convergence line or the cold air invading) favoured moisture supply and lifting mechanisms for convection and the rainstorms. During the hot afternoon hours, the thermals forming at the surface further enhanced convection and the rainstorms.

Multi-watershed nonpoint source pollution management through coupling Bayesian-based simulation and mechanism-based effluent trading optimization

Multiple rivers flowing into the same bay can be correlated in water quality management and together determine the environmental status of the bay. Nonpoint source pollution management for multi-watershed aiming to alleviate environmental contamination as well as yield considerable economic and environmental benefits can be under additional challenges. In this study, a Bayesian simulation-based multi-watershed effluent trading designing model (BS-METM) is established for multi-watershed nonpoint source pollution management through incorporating techniques of water quality simulation, uncertainty analysis with Bayesian inference, optimal design for effluent trading, as well as mechanism analysis. BS-METM is capable of reflecting parameter uncertainties in nutrient simulation, disclosing the detailed optimal trading schemes under the impact of uncertainties and vital factors, and identifying optimal effluent trading mechanisms through revealing interaction among trading processes of multiple watersheds. BS-METM is applied to a real case of adjacent coastal watersheds (i.e. Daguhe and Moshuihe watersheds), which are identified as major sources of total phosphorus and ammonia nitrogen loadings to Jiaozhou Bay, China. Effluent trading optimization under multiple mechanisms, including intra-watershed trading, cross-watershed trading and non-trading, are conducted. The optimized industry scales and trading processes are obtained. The effects of vital factors on the trading process (i.e. environmental allowance-violation risk level and water availability level) are investigated. The interactions between water availability level and trading mechanism are also analyzed. It is proved that non-trading mechanism would be recommended under low water availability level and cross-watershed trading mechanism would be recommended under medium and high water availability level. The results provide a solid scientific basis for nonpoint source pollution management as well as effective sustainable development for multi-watershed region.Graphical abstract

Data-Oriented Language Implementation of the Lattice–Boltzmann Method for Dense and Sparse Geometries

The performance of lattice–Boltzmann solver implementations usually depends mainly on memory access patterns. Achieving high performance requires then complex code which handles careful data placement and ordering of memory transactions. In this work, we analyse the performance of an implementation based on a new approach called the data-oriented language, which allows the combination of complex memory access patterns with simple source code. As a use case, we present and provide the source code of a solver for D2Q9 lattice and show its performance on GTX Titan Xp GPU for dense and sparse geometries up to 40962 nodes. The obtained results are promising, around 1000 lines of code allowed us to achieve performance in the range of 0.6 to 0.7 of maximum theoretical memory bandwidth (over 2.5 and 5.0 GLUPS for double and single precision, respectively) for meshes of sizes above 10242 nodes, which is close to the current state-of-the-art. However, we also observed relatively high and sometimes difficult to predict overheads, especially for sparse data structures. The additional issue was also a rather long compilation, which extended the time of short simulations, and a lack of access to low-level optimisation mechanisms.

Contextual modulations in high-level vision are partly accounted for by low-level mechanisms

Contextual modulations in high-level vision are partly accounted for by low-level mechanisms

Acute pain impairs sustained attention.

Pain affects the lives of many individuals by creating physical, psychological, and economic burdens. A critical psychological factor negatively affected by pain is one's ability to sustain attention. In order to better understand the effect of pain on sustained attention we conducted three experiments utilizing the psychomotor vigilance task, thought probes, and pupillometry. In Experiment 1, participants in acute pain exhibited overall poorer task performance. However, this effect was localized to the relative frequency and duration of the participants' slowest responses with their faster responses being equivalent to a no-pain control group. In Experiment 2, we replicated the procedure and included periodic thought probes to overtly measure subjective experiences during the task. Participants in pain reported fewer "on-task" thoughts and more thoughts directed toward the source of their pain. In Experiment 3, we replicated the procedure while simultaneously tracking pupillary dynamics using an eye-tracker. Participants in pain had smaller task-evoked pupillary responses, which is thought to be an indicator of task engagement. However, the behavioral effects of pain from Experiments 1 and 2 were not replicated in Experiment 3. Taken together, pain led to poorer performance in the form of an increase in the relative frequency and extremeness of slow responses, increases in off-task thoughts, and reductions in a physiological indicator of task engagement. These data speak to theories of how pain competes with task goals for attention and negatively impacts behavior. The broader implications of this work are the identification of a low-level mechanism by which pain can interfere with normal cognitive functioning. (PsycInfo Database Record (c) 2021 APA, all rights reserved).

Experience-dependent reshaping of body gender perception

Protracted exposure to specific stimuli causes biased visual aftereffects at both low- and high-level dimensions of a stimulus. Recently, it has been proposed that alterations of these aftereffects could play a role in body misperceptions. However, since previous studies have mainly addressed manipulations of body size, the relative contribution of low-level retinotopic and/or high-level object-based mechanisms is yet to be understood. In three experiments, we investigated visual aftereffects for body-gender perception, testing for the tuning of visual aftereffects across different characters and orientation. We found that exposure to a distinctively female (or male) body makes androgynous bodies appear as more masculine (or feminine) and that these aftereffects were not specific for the individual characteristics of the adapting body (Exp.1). Furthermore, exposure to only upright bodies (Exp.2) biased the perception of upright, but not of inverted bodies, while exposure to both upright and inverted bodies (Exp.3) biased perception for both. Finally, participants’ sensitivity to body aftereffects was lower in individuals with greater communication deficits and deeper internalization of a male gender role. Overall, our data reveals the orientation-, but not identity-tuning of body-gender aftereffects and points to the association between alterations of the malleability of body gender perception and social deficits.