Non-point source (NPS) pollution is a significant issue in the Hetao Irrigation District (HID), affecting local water environment and ecological safety. To explore solutions for managing NPS pollution in the HID, this study establishes the SWAT-MODFLOW-RT3D (SMFR) model based on data from recent years. The results show that the determination coefficient (R2) of monthly drainage simulation for both the calibration and validation periods are >0.6, the Nash-Sutcliffe efficiency (NSE) values are >0.7, and the percent bias (PBIAS) values are <10 %. For pollutant transport simulation (total nitrogen and total phosphorus), the R2 values for both calibration and validation periods exceed 0.6, the NSEs are >0.75, and the PBIAS values are below 20 %. The model demonstrates good performance in simulating hydrology and pollutant transport in the study area, indicating strong applicability. Building on this, the spatial and temporal distribution characteristics of nitrogen and phosphorus losses in the HID were analyzed, and the impacts of different agricultural management practices, such as irrigation and fertilization regimes, drip irrigation under film (DIUF), and crop structure adjustments, on NPS pollution were assessed. Extensive scenario testing indicates that deficit irrigation and DIUF reduce total nitrogen (TN) in agricultural NPS pollution by 7.74 % and 9.34 %, respectively, and total phosphorus (TP) by 35.12 % and 40.99 %, respectively. In contrast, crop structure adjustments have a relatively moderate reduction effect on TN and TP, ranging from 2.66 % to 6.80 %. Additionally, the study examines the NPS pollution control effects of various combined scenarios. Through economic benefit evaluation, it was found that the scenario combining deficit irrigation with crop structure adjustments has a lower cost-effectiveness (CE) ratio and a higher cost-benefit (CB) ratio, making it a more favorable measure for controlling NPS pollution in the HID.
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