Abstract Coastal flooding induced by sea surface high extreme (HEX) events is an increasing risk to human society and infrastructure as both urban growth in coastal areas and anthropogenic sea level rise continue, especially for island nations like Indonesia. This paper investigates the role of atmospheric intraseasonal oscillations (ISOs), which are dominated by the Madden–Julian oscillation (MJO), in forcing HEXs on the coasts of Indonesia bordering the Indian Ocean. We use satellite altimetry data from 1993 to 2021 and tide gauge observations to detect HEXs, and modeling experiments using both the Regional Ocean Modeling System and a Bayesian dynamic linear model to understand the forcing and processes. We find that HEXs exhibit strong seasonality, with most events occurring during boreal winter (December–February) and spring (March–May) that are dominated by seasonal-to-decadal and intraseasonal variability respectively. In 32% of the 56 HEX events detected, the amplitude of ISO-induced sea level anomalies (SLAs) exceeds that of seasonal-to-decadal SLAs. Surface wind stress associated with atmospheric ISOs is the major forcing for intraseasonal SLAs, and both the remote westerly wind stress from the Indian Ocean equator and northwesterly longshore wind stress at the Indonesian coasts play important roles in driving the HEXs. The MJO is the dominant cause of ISO-dominated HEXs and its impact shows strong seasonal differences. Spring MJOs are associated with stronger convective anomalies over the eastern Indian Ocean equator that drive stronger zonal winds across the equatorial basin that lead to more HEX events compared to winter MJOs when the convection is shifted southward.
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