Long-Term Ecological Research Site Research Articles

Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake

BackgroundProtists, single-celled eukaryotic organisms, are critical to food web ecology, contributing to primary productivity and connecting small bacteria and archaea to higher trophic levels. Lake Mendota is a large, eutrophic natural lake that is a Long-Term Ecological Research site and among the world’s best-studied freshwater systems. Metagenomic samples have been collected and shotgun sequenced from Lake Mendota for the last 20 years. Here, we analyze this comprehensive time series to infer changes to the structure and function of the protistan community and to hypothesize about their interactions with bacteria.ResultsBased on small subunit rRNA genes extracted from the metagenomes and metagenome-assembled genomes of microeukaryotes, we identify shifts in the eukaryotic phytoplankton community over time, which we predict to be a consequence of reduced zooplankton grazing pressures after the invasion of a invasive predator (the spiny water flea) to the lake. The metagenomic data also reveal the presence of the spiny water flea and the zebra mussel, a second invasive species to Lake Mendota, prior to their visual identification during routine monitoring. Furthermore, we use species co-occurrence and co-abundance analysis to connect the protistan community with bacterial taxa. Correlation analysis suggests that protists and bacteria may interact or respond similarly to environmental conditions. Cryptophytes declined in the second decade of the timeseries, while many alveolate groups (e.g., ciliates and dinoflagellates) and diatoms increased in abundance, changes that have implications for food web efficiency in Lake Mendota.ConclusionsWe demonstrate that metagenomic sequence-based community analysis can complement existing efforts to monitor protists in Lake Mendota based on microscopy-based count surveys. We observed patterns of seasonal abundance in microeukaryotes in Lake Mendota that corroborated expectations from other systems, including high abundance of cryptophytes in winter and diatoms in fall and spring, but with much higher resolution than previous surveys. Our study identified long-term changes in the abundance of eukaryotic microbes and provided context for the known establishment of an invasive species that catalyzes a trophic cascade involving protists. Our findings are important for decoding potential long-term consequences of human interventions, including invasive species introduction.BaNPxYigHXA7H5uqkH8sryVideo

The drivers of intraspecific trait variation and their implications for future tree productivity and survival.

Forests are facing unprecedented levels of stress from pest and disease outbreaks, disturbance, fragmentation, development, and a changing climate. These selective agents act to alter forest composition from regional to cellular levels. Thus, a central challenge for understanding how forests will be impacted by future change is how to integrate across scales of biology. Phenotype, or an observable trait, is the product of an individual's genes (G) and the environment in which an organism lives (E). To date, researchers have detailed how environment drives variation in tree phenotypes over long time periods (e.g., long-term ecological research sites [LTERs]) and across large spatial scales (e.g., flux network). In parallel, researchers have discovered the genes and pathways that govern phenotypes, finding high degrees of genetic control and signatures of local adaptation in many plant traits. However, the research in these two areas remain largely independent of each other, hindering our ability to generate accurate predictions of plant response to environment, an increasingly urgent need given threats to forest systems. I present the importance of both genes and environment in determining tree responses to climate stress. I highlight why the difference between G versus E in driving variation is critical for our understanding of climate responses, then propose means of accelerating research that examines G and E simultaneously by leveraging existing long-term, large-scale phenotypic data sets from ecological networks and adding newly affordable sequence (-omics) data to both drill down to find the genes and alleles influencing phenotypes and scale up to find how patterns of demography and local adaptation may influence future response to change.

Differences in field behavior between native gastropods and the fast-spreading invader Arion lusitanicus auct. non Mabille

Dispersal is a crucial process for population exchange and expansion, and traits that facilitate dispersal may be positively selected during biological invasions. Here, we performed a basic study on differences in behavior between the slug Arion lusitanicus auct. non MABILLE, 1868 (Gastropoda: Pulmonata), which is considered to be one of the 100 worst invasive species in Europe, and native gastropods. We assumed that the species is more active and less sensitive to otherwise aversive stimuli, and thus more likely to utilize novel environments. We quantified field densities and performed pitfall trap studies in 15 differently-structured habitats (urban, grassland, succession, riverine forest) in the floodplain of the LTER (Long Term Ecological Research) site ‘Rhine-Main-Observatory’ in Hesse, Germany. Here, A. lusitanicus was naturalized and scored 15 in terms of abundance rank, but was the dominant species in terms of trappability with the acidic Renner solution. A more detailed approach with a set of different baits showed that individuals of the invader were attracted to the acidic Renner solution, mustard oil, and garlic extract, all of which the native snails and slugs avoided. The results support the hypothesis that the invasive slug differs from other gastropods in its behavioral response to unusual, novel stimuli that may indicate some potential threat to other gastropod species. Future studies are needed to show if this behavior is related to personality traits such as exploration, boldness and risk-taking, and if it may have been positively selected in the context of the slug being passively spread in severely-transformed habitats such as gardens and greenhouses.

Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters

Abstract. Because of its temperate location, high dynamic range of environmental conditions, and extensive human activity, the long-term ecological research site in the coastal Northeastern US Shelf (NES) of the northwestern Atlantic Ocean offers an ideal opportunity to understand how productivity shifts in response to changes in planktonic community composition. Ocean production and trophic transfer rates, including net community production (NCP), net primary production (NPP), gross oxygen production (GOP), and microzooplankton grazing rates, are key metrics for understanding marine ecosystem dynamics and associated impacts on biogeochemical cycles. Although small phytoplankton usually dominate phytoplankton community composition and Chl a concentration in the NES waters during the summer, in August 2019, a bloom of the large diatom genus Hemiaulus, with N2-fixing symbionts, was observed in the mid-shelf region. NCP was 2.5 to 9 times higher when Hemiaulus dominated phytoplankton carbon compared to NCP throughout the same geographic area during the summers of 2020–2022. The Hemiaulus bloom in summer 2019 also coincided with higher trophic transfer efficiency from phytoplankton to microzooplankton and higher GOP and NPP than in the summers 2020–2022. This study suggests that the dominance of an atypical phytoplankton community that alters the typical size distribution of primary producers can significantly influence productivity and trophic transfer, highlighting the dynamic nature of the coastal ocean. Notably, summer 2018 NCP levels were also high, although the size distribution of Chl a was typical and an atypical phytoplankton community was not observed. A better understanding of the dynamics of the NES in terms of biological productivity is of primary importance, especially in the context of changing environmental conditions due to climate processes.

Quantifying shrub-shrub competition in drylands using aerial imagery and a novel landscape competition index.

The Jornada Basin Long-Term Ecological Research Site (JRN-LTER, or JRN) is a semiarid grassland-shrubland in southern New Mexico, USA. The role of intraspecific competition in constraining shrub growth and establishment at the JRN and in arid systems, in general, is an important question in dryland studies. Using information on shrub distributions and growth habits at the JRN, we present a novel landscape-scale (c. 1 ha) metric (the 'competition index', CI), which quantifies the potential intensity of competitive interactions. We map and compare the intensity of honey mesquite (Prosopis glandulosa, Torr.) competition spatially and temporally across the JRN-LTER, investigating associations of CI with shrub distribution, density, and soil types. The CI metric shows strong correlation with values of percent cover. Mapping CI across the Jornada Basin shows that high-intensity intraspecific competition is not prevalent, with few locations where intense competition is likely to be limiting further honey mesquite expansion. Comparison of CI among physiographic provinces shows differences in average CI values associated with geomorphology, topography, and soil type, suggesting that edaphic conditions may impose important constraints on honey mesquite and growth. However, declining and negative growth rates with increasing CI suggest that intraspecific competition constrains growth rates when CI increases above c. 0.5.

Long-term trends in stream benthic macroinvertebrate communities are driven by chemicals

BackgroundRecent studies indicate a partial recovery of European stream macroinvertebrate diversity. However, the key determinants shaping the overall community trends are only partly explored, owing to insufficient long-term environmental data collected in parallel with community responses. We investigate long-term trends in stream macroinvertebrate communities (i.e., taxonomic and trait composition and metrics), and explore their relationships to diverse environmental drivers (i.e., land-use, runoff, water temperature, and in-stream chemicals). We use macroinvertebrate data collected annually in spring and summer between 2007 and 2021 at four sampling sites within the Rhine-Main-Observatory Long-Term Ecological Research site. These sampling sites encompass a gradient from less-disturbed to disturbed conditions.ResultsOver time, shifts in taxonomic and trait composition and metrics indicated an improvement in environmental conditions. Long-term trends of biological trait metrics mirrored those for taxonomic metrics; for example, increases over time in taxonomic richness were paralleled by increases in functional richness and functional dispersion. Meanwhile, trends of ecological trait metrics were particularly driven by changes in environmental drivers. Land-use, water temperature, and runoff explained around 20% of the overall variance in long-term trends of macroinvertebrate communities. Water temperature and land-use played relatively equal roles in shaping taxonomic and trait composition and metric responses in spring, while water temperature emerged as the most influential driver in summer. However, when incorporating long-term chemical data as a more direct measurement of changes in land-use, the overall variance explained in macroinvertebrate community trends increased to c.a. 50% in both seasons.ConclusionsExamining more relevant driver variables beyond land-use and climate improves insights into why biodiversity exhibits long-term trends. We call for an increase in initiatives to link biodiversity monitoring with parallel sampling of relevant environmental drivers.

Thermal adaptation of soil microbial growth traits in response to chronic warming.

Soils are the largest terrestrial carbon sink and the foundation of our food, fiber, and fuel systems. Healthy soils are carbon sinks, storing more carbon than they release. This reduces the amount of carbon dioxide released into the atmosphere and buffers against climate change. Soil microbes drive biogeochemical cycling and contribute to soil health through organic matter breakdown, plant growth promotion, and nutrient distribution. In this study, we determined how soil microbial growth traits respond to long-term soil warming. We found that bacterial isolates from warmed plots showed evidence of adaptation of optimum growth temperature. This suggests that increased microbial biomass and growth in a warming world could result in greater carbon storage. As temperatures increase, greater microbial activity may help reduce the soil carbon feedback loop. Our results provide insight on how atmospheric carbon cycling and soil health may respond in a warming world.

A novel subsurface sediment plate method for quantifying sediment accumulation and erosion in seagrass meadows

Sediment dynamics in seagrass meadows are key determinants of carbon sequestration and storage, surface elevation, and resilience and recovery from disturbance. However, current methods for measuring sediment accumulation are limited. For example, 210Pb dating, the most popular tool for quantifying sediment accretion rates over decadal timescales, relies on assumptions often at odds with seagrass meadows. Here, we have developed a novel subsurface sediment plate method to detect changes in sediment accumulation and erosion in real time that: 1) is affordable and simple to implement, 2) can quantify short-term (weeks to months) sediment dynamics of accumulation and erosion, 3) is non-destructive and minimizes impacts to surface-level processes, and 4) can quantify long-term (years) net sediment accumulation rates. We deployed subsurface sediment plates at two sites within a 20 km2 seagrass meadow in the Virginia Coast Reserve Long-Term Ecological Research site, USA. Here, we discuss spatial and temporal trends in sediment dynamics over a 25-month period, the sediment accretion rates estimated using the subsurface sediment plate method compared to previous estimates based on 210Pb dating, the precision of the method, and our recommendations for implementing the method for measuring surface sediment dynamics in other seagrass settings. We recommend the application of this method for quantifying short- and long-term changes in seagrass surface sediments across various spatial scales to improve our understanding of disturbance, recovery, restoration, carbon cycling, sediment budgets, and the response of seagrasses to rising sea levels.

Quantitative Representativeness and Constituency of the Long-Term Agroecosystem Research Network and Analysis of Complementarity with Existing Ecological Networks

Studies conducted at sites across ecological research networks usually strive to scale their results to larger areas, trying to reach conclusions that are valid throughout larger enclosing regions. Network representativeness and constituency can show how well conditions at sampling locations represent conditions also found elsewhere and can be used to help scale-up results over larger regions. Multivariate statistical methods have been used to design networks and select sites that optimize regional representation, thereby maximizing the value of datasets and research. However, in networks created from already established sites, an immediate challenge is to understand how well existing sites represent the range of environments in the whole area of interest. We performed an analysis to show how well sites in the USDA Long-Term Agroecosystem Research (LTAR) Network represent all agricultural working lands within the conterminous United States (CONUS). Our analysis of 18 LTAR sites, based on 15 climatic and edaphic characteristics, produced maps of representativeness and constituency. Representativeness of the LTAR sites was quantified through an exhaustive pairwise Euclidean distance calculation in multivariate space, between the locations of experiments within each LTAR site and every 1 km cell across the CONUS. Network representativeness is from the perspective of all CONUS locations, but we also considered the perspective from each LTAR site. For every LTAR site, we identified the region that is best represented by that particular site—its constituency—as the set of 1 km grid locations best represented by the environmental drivers at that particular LTAR site. Representativeness shows how well the combination of characteristics at each CONUS location was represented by the LTAR sites’ environments, while constituency shows which LTAR site was the closest match for each location. LTAR representativeness was good across most of the CONUS. Representativeness for croplands was higher than for grazinglands, probably because croplands have more specific environmental criteria. Constituencies resemble ecoregions but have their environmental conditions “centered” on those at particular existing LTAR sites. Constituency of LTAR sites can be used to prioritize the locations of experimental research at or even within particular sites, or to identify the extents that can likely be included when generalizing knowledge across larger regions of the CONUS. Sites with a large constituency have generalist environments, while those with smaller constituency areas have more specialized environmental combinations. These “specialist” sites are the best representatives for smaller, more unusual areas. The potential of sharing complementary sites from the Long-Term Ecological Research (LTER) Network and the National Ecological Observatory Network (NEON) to boost representativeness was also explored. LTAR network representativeness would benefit from borrowing several NEON sites and the Sevilleta LTER site. Later network additions must include such specialist sites that are targeted to represent unique missing environments. While this analysis exhaustively considered principal environmental characteristics related to production on working lands, we did not consider the focal agronomic systems under study, or their socio-economic context.

Flux and stable isotope fractionation of CO2 in a mesic prairie headwater stream

Abstract The carbon dioxide (CO2) fluxes from headwater streams are not well quantified and could be a source of significant carbon, particularly in systems underlain by carbonate lithology. Also, the sensitivity of carbonate systems to changes in temperature will make these fluxes even more significant as climate changes. This study quantifies small-scale CO2 efflux and estimates annual CO2 emission from a headwater stream at the Konza Prairie Long-Term Ecological Research Site and Biological Station (Konza), in a complex terrain of horizontal, alternating limestones and shales with small-scale karst features. CO2 effluxes ranged from 2.2 to 214 g CO2 m−2 day−1 (mean: 20.9 CO2 m−2 day−1). Downstream of point groundwater discharge sources, CO2 efflux decreased, over 2 m, to 3–40% of the point-source flux, while δ13C-CO2 increased, ranging from −9.8 ‰ to −23.2 ‰ V-PDB. The δ13C-CO2 increase was not strictly proportional to the CO2 flux but related to the origin of vadose zone CO2. The high spatial and temporal variability of CO2 efflux from this headwater stream informs those doing similar measurements and those working on upscaling stream data, that local variability should be assessed to estimate the impact of headwater stream CO2 efflux on the global carbon cycle.

Long-term trends in abundances of non-native species across biomes, realms, and taxonomic groups in Europe

Rates of biological invasion have increased over recent centuries and are expected to increase in the future. Whereas increasing rates of non-native species incursions across realms, taxonomic groups, and regions are well-reported, trends in abundances within these contexts have lacked analysis due to a paucity of long-term data at large spatiotemporal scales. These knowledge gaps impede prioritisation of realms, regions, and taxonomic groups for management. We analysed 180 biological time series (median 15 ± 12.8 sampling years) mainly from Long-Term Ecological Research (LTER) sites comprising abundances of marine, freshwater, and terrestrial non-native species in Europe. A high number (150; 83,3 %) of these time series were invaded by at least one non-native species. We tested whether (i) local long-term abundance trends of non-native species are consistent among environmental realms, taxonomic groups, and regions, and (ii) if any detected trend can be explained by climatic conditions. Our results indicate that abundance trends at local scales are highly variable, with evidence of declines in marine and freshwater long-term monitoring sites, despite non-native species reports increasing rapidly since the late 1970s. These declines were driven mostly by abundance trends in non-native fish, birds, and invertebrate species in three biogeographic regions (Continental, Atlantic, and the North Sea). Temperature and precipitation were important predictors of observed abundance trends across Europe. Yet, the response was larger for species with already declining trends and differed among taxa. Our results indicate that trends in biological invasions, especially across different taxonomic groups, are context-dependent and require robust local data to understand long-term trends across contexts at large scales. While the process of biological invasion is spatiotemporally broad, economic or ecological impacts are generally realised on the local level. Accordingly, we urge proactive and coordinated management actions from local to large scales, as invasion impacts are substantial and dynamics are prone to change.

El raro chinche de las marismas Teratocoris antennatus (Boheman, 1852) (Hemiptera, Miridae), nueva especie para Portugal

Ria de Aveiro costal lagoon is a socio-ecological system framed between the land and the sea. The lagoon is embedded in a biodiversity rich landscape mosaic comprising beaches, dunes, sandflats, mudflats, seagrasses, and small water channels, and is one of the largest saltmarsh areas in Portugal and in Europe, supporting coastal food webs and providing nursery areas for several species. Despite being a Long-Term Ecological Research (LTER) site and integrating the Natura 2000 network, few systematic studies have been carried on its entomofauna. In this work, field collections were carried in seven locations along Ria de Aveiro saltmarsh areas by sweep-netting the dominating halophyte vegetation in September 2020. From these collections, Teratocoris antennatus (Boheman, 1852), a rare marsh bug, is reported for the first time for Portugal.

Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments

While the field of microbial biogeography has largely focused on the contributions of abiotic factors to community patterns, the potential influence of biotic interactions in structuring microbial communities, such as those mediated by the production of specialized metabolites, remains largely unknown. Here, we examined the relationship between microbial community structure and specialized metabolism at local spatial scales in marine sediment samples collected from the Long-Term Ecological Research (LTER) site in Moorea, French Polynesia. By employing a multi-omic approach to characterize the taxonomic, functional, and specialized metabolite composition within sediment communities, we find that biogeographic patterns were driven by local scale processes (e.g., biotic interactions) and largely independent of dispersal limitation. Specifically, we observed high variation in biosynthetic potential (based on Bray-Curtis dissimilarity) between samples, even within 1 m2 plots, that reflected uncharacterized chemical space associated with site-specific metabolomes. Ultimately, connecting biosynthetic potential to community metabolomes facilitated the in situ detection of natural products and revealed new insights into the complex metabolic dynamics associated with sediment microbial communities. Our study demonstrates the potential to integrate biosynthetic genes and metabolite production into assessments of microbial community dynamics.

Warming and drought weaken the carbon sink capacity of an endangered paleoendemic temperate rainforest in South America.

Measurements of ecosystem carbon (C) fluxes in temperate forests are concentrated in the Northern Hemisphere, leaving the functionally diverse temperate forests in the Southern Hemisphere underrepresented. Here, we report three years (February 2018-January 2021) of C fluxes, studied with eddy-covariance and closed chamber techniques, in an endangered temperate evergreen rainforest of the long-lived paleoendemic South American conifer Fitzroya cupressoides. Using classification and regression trees we analyzed the most relevant drivers and thresholds of daily net ecosystem exchange (NEE) and soil respiration. The annual NEE showed that the forest was a moderate C sink during the period analyzed (-287±38 g C m-2 year -1). We found that the capacity to capture C of the Fitzroya rainforests in the Coastal Range of southern Chile is optimal under cool and rainy conditions in the early austral spring (October-November) and decreases rapidly towards the summer dry season (January-February) and autumn. Although the studied forest type has a narrow geographical coverage, the gross primary productivity measured at the tower was highly representative of Fitzroya and other rainforests in the region. Our results suggest that C fluxes in paleoendemic cool F. cupressoides forests may be negatively affected by the warming and drying predicted by climate change models, reinforcing the importance of maintaining this and other long-term ecological research sites in the Southern Hemisphere.

Scientists’ attitudes about citizen science at Long-Term Ecological Research (LTER) sites

A profound transformation, in recent decades, is promoting shifts in the ways ecological science is produced and shared; as such, ecologists are increasingly encouraged to engage in dialogues with multiple stakeholders and in transdisciplinary research. Among the different forms of public engagement, citizen science (CS) has significant potential to support science-society interactions with mutual benefits. While many studies have focused on the experience and motivations of CS volunteers, scarce literature investigating the perspectives of researchers is available. The main purpose of this paper is to better understand scientists’ attitudes about CS in the context of its potential to support outcomes that extent beyond more traditional ones focused on promoting science knowledge and interest. We surveyed the scientific community belonging to the International Long-Term Ecological Research (ILTER) network because ILTER is of interest to multiple stakeholders and occurs over long time scales. Via an online questionnaire, we asked ILTER scientists about their willingness to participate in different types of public engagement, their reasons for participating in CS, the associated barriers, and any impacts of these efforts on them. Our findings show that many ILTER scientists are open to participating in CS for a wide range of reasons; the dominant ones involve deeper public engagement and collaboration. The barriers of greatest concern of these respondents were the lack of institutional support to start and run a CS project and the difficulty of establishing long-term stable relationships with the public. They reported impacts of CS activities on how they pursue their work and acknowledged the benefit of opportunities to learn from the public. The emerging picture from this research is of a community willing and actively involved in many CS projects for both traditional reasons, such as data gathering and public education, and expanded reasons that activate a real two-way cooperation with the public. In the ILTER community, CS may thus become an opportunity to promote and develop partnerships with citizens, helping to advance the science-society interface and to rediscover and enhance the human and social dimension of the scientific work.

Long-term Ecological Research: Chasing fashions or being prepared for fashion changes?

Long-term-ecological-research (LTER) faces many challenges, including the difficulty of obtaining long-term funding, changes in research questions and sampling designs, keeping researchers collecting standardized data for many years, impediments to interactions with local people, and the difficulty of integrating the needs of local decision makers with "big science". These issues result in a lack of universally accepted guidelines as to how research should be done and integrated among LTER sites. Here we discuss how the RAPELD (standardized field infrastructure system), can help deal with these issues as a complementary technique in LTER studies, allowing comparisons across landscapes and ecosystems and reducing sampling costs. RAPELD uses local surveys to understand broad spatial and temporal patterns while enhancing decision-making and training of researchers, local indigenous groups and traditional communities. Sampling of ecological data can be carried out by different researchers through standardized protocols, resulting in spatial data that can be used to answer temporal questions, and allow new questions to be investigated. Results can also be integrated into existing biodiversity networks. Integrated systems are the most efficient way to save resources, maximize results, and accumulate information that can be used in the face of the unknown unknowns upon which our future depends.

Long-Term Ecological Research on Ecosystem Responses to Climate Change.

abstractIn this article marking the 40th anniversary of the US National Science Foundation's Long Term Ecological Research (LTER) Network, we describe how a long-term ecological research perspective facilitates insights into an ecosystem's response to climate change. At all 28 LTER sites, from the Arctic to Antarctica, air temperature and moisture variability have increased since 1930, with increased disturbance frequency and severity and unprecedented disturbance types. LTER research documents the responses to these changes, including altered primary production, enhanced cycling of organic and inorganic matter, and changes in populations and communities. Although some responses are shared among diverse ecosystems, most are unique, involving region-specific drivers of change, interactions among multiple climate change drivers, and interactions with other human activities. Ecosystem responses to climate change are just beginning to emerge, and as climate change accelerates, long-term ecological research is crucial to understand, mitigate, and adapt to ecosystem responses to climate change.

Estimation of aboveground biomass production using an unmanned aerial vehicle (UAV) and VENμS satellite imagery in Mediterranean and semiarid rangelands

Rangeland management requires frequent and accurate estimation of aboveground vegetation biomass (AGB) as a proxy of forage production. However, traditional methods for AGB measurement are time-consuming and only provide a low number of spatiotemporal measurements. Newly developed remote sensing platforms such as UAVs and new generation satellites allow unprecedented large-scale and frequent monitoring of rangeland vegetation that is typically produced in marginal lands characterized by high surface heterogeneity. This study used high-resolution UAV data and the new multi-spectral VENμS satellite to monitor AGB production for two consecutive years in a Mediterranean and semiarid grassland rangeland in Israel. We then studied the effects of grazing intensity and precipitation along the growing season on AGB. Data were collected from two long-term ecological research sites with plots under controlled grazing pressures (i.e., no grazing, moderate, and intensive grazing). We used high-spatial-resolution UAV imagery for land cover classification in order to mask different levels of mixed pixels in the VENμS satellite images along the growing season. A support vector regression model (SVM) for satellite-based AGB estimation was developed using more than 600 ground-truth AGB measurements collected during 2019–2020. The effect of the percentage cover for mixed pixel removal was examined. The results showed an improvement in the prediction model by 35% and reduced the RMSE by half for the support vector machine regression model's best prediction. The best AGB prediction results were achieved by including satellite pixels with over 50% vegetation cover. For the first time in Eastern Mediterranean rangelands, our study illustrates the benefits of high-integrated remote sensing data (i.e., satellite and UAV) for generating more accurate AGB estimations even in highly heterogeneous ecosystems in terms of surface cover. Such an approach can provide crucial and better information for sustainable rangeland management under varying spatiotemporal and climatic conditions.

Nitrification and denitrification in the Community Land Model compared with observations at Hubbard Brook Forest.

Models of terrestrial system dynamics often include nitrogen (N) cycles to better represent N limitations on terrestrial carbon (C) uptake, but simulating the fate of N in ecosystems has proven challenging. Here, key soil N fluxes and flux ratios from the Community Land Model version 5.0 (CLM5.0) are compared with an extensive set of observations from the Hubbard Brook Forest Long-Term Ecological Research site in New Hampshire. Simulated fluxes include microbial immobilization and plant uptake, which compete with nitrification and denitrification, respectively, for available soil ammonium (NH4 + ) and nitrate (NO3 - ). In its default configuration, CLM5.0 predicts that both plant uptake and immobilization are strongly dominated by NH4 + over NO3 - , and that the model ratio of nitrification:denitrification is ~1:1. In contrast, Hubbard Brook observations suggest that NO3 - plays a more significant role in plant uptake and that nitrification could exceed denitrification by an order of magnitude. Modifications to the standard CLM5.0 at Hubbard Brook indicate that a simultaneous increase in the competitiveness of nitrifying microbes for NH4 + and reduction in the competitiveness of denitrifying bacteria for NO3 - are needed to bring soil N flux ratios into better agreement with observations. Such adjustments, combined with evaluation against observations, may help to improve confidence in present and future simulations of N limitation on the C cycle, although C fluxes, such as gross primary productivity and net primary productivity, are less sensitive to the model modifications than soil N fluxes.

Urban net primary production: Concepts, field methods, and Baltimore, Maryland, USA case study.

Given the large and increasing amount of urban, suburban, and exurban land use on Earth, there is a need to accurately assess net primary productivity (NPP) of urban ecosystems. However, the heterogeneous and dynamic urban mosaic presents challenges to the measurement of NPP, creating landscapes that may appear more similar to a savanna than to the native landscape replaced. Studies of urban biomass have tended to focus on one type of vegetation (e.g., lawns or trees). Yet a focus on the ecology of the city should include the entire urban ecosystem rather than the separate investigation of its parts. Furthermore, few studies have attempted to measure urban aboveground NPP (ANPP) using field-based methods. Most studies project growth rates from measurements of tree diameter to estimate annual ANPP or use remote sensing approaches. In addition, field-based methods for measuring NPP do not address any special considerations for adapting such field methods to urban landscapes. Frequent planting and partial or complete removal of herbaceous and woody plants can make it difficult to accurately quantify increments and losses of plant biomass throughout an urban landscape. In this study, we review how ANPP of urban landscapes can be estimated based on field measurements, highlighting the challenges specific to urban areas. We then estimated ANPP of woody and herbaceous vegetation over a 15-year period for Baltimore, MD, USA using a combination of plot-based field data and published values from the literature. Baltimore's citywide ANPP was estimated to be 355.8g m-2 , a result that we then put into context through comparison with other North American Long-Term Ecological Research (LTER) sites and mean annual precipitation. We found our estimate of Baltimore citywide ANPP to be only approximately half as much (or less) than ANPP at forested LTER sites of the eastern United States, and more comparable to grassland, oldfield, desert, or boreal forest ANPP. We also found that Baltimore had low productivity for its level of precipitation. We conclude with a discussion of the significance of accurate assessment of primary productivity of urban ecosystems and critical future research needs.