Local Environment Research Articles

Enhancers: A Focus on Synthetic Biology and Correlated Gene Expression.

Enhancers are central for the regulation of metazoan transcription but have proven difficult to study, primarily due to a myriad of interdependent variables shaping their activity. Consequently, synthetic biology has emerged as the main approach for dissecting mechanisms of enhancer function. We start by reviewing simple but highly parallel reporter assays, which have been successful in quantifying the complexity of the activator/coactivator mechanisms at enhancers. We then describe studies that examine how enhancers function in the genomic context and in combination with other enhancers, revealing that they activate genes through a variety of different mechanisms, working together as a system. Here, we primarily focus on synthetic reporter genes that can quantify the dynamics of enhancer biology through time. We end by considering the consequences of having many genes and enhancers within a 'local environment', which we believe leads to correlated gene expression and likely reports on the general principles of enhancer biology.

Data-driven modeling of dislocation mobility from atomistics using physics-informed machine learning

Dislocation mobility, which dictates the response of dislocations to an applied stress, is a fundamental property of crystalline materials that governs the evolution of plastic deformation. Traditional approaches for deriving mobility laws rely on phenomenological models of the underlying physics, whose free parameters are in turn fitted to a small number of intuition-driven atomic scale simulations under varying conditions of temperature and stress. This tedious and time-consuming approach becomes particularly cumbersome for materials with complex dependencies on stress, temperature, and local environment, such as body-centered cubic crystals (BCC) metals and alloys. In this paper, we present a novel, uncertainty quantification-driven active learning paradigm for learning dislocation mobility laws from automated high-throughput large-scale molecular dynamics simulations, using Graph Neural Networks (GNN) with a physics-informed architecture. We demonstrate that this Physics-informed Graph Neural Network (PI-GNN) framework captures the underlying physics more accurately compared to existing phenomenological mobility laws in BCC metals.

Simulation and time series analysis of responsive active brownian particles (rabps) with memory.

To realise the goals of active matter at the micro- and nano-scale, the next generation of microrobots must be capable of autonomously sensing and responding to their environment to carry out preprogrammed tasks. Memory effects are proposed to have a significant effect on the dynamics of responsive robotic systems, drawing parallels to strategies used in nature across all length-scales. Inspired by the integral feedback control mechanism by which E. Coli are proposed to sense their environment, we develop a numerical model for responsive active Brownian particles (rABP) in which the rABPs continuously react to changes in the physical parameters dictated by their local environment. The resulting time series, extracted from their dynamic diffusion coefficients or from
their fluctuating position with time, are then used to classify and characterise their response, leading to the identification of conditional heteroscedasticity in their physics. We then train recurrent neural networks (RNNs) capable of quantitatively describing the responsiveness of rABPs using their 2-D trajectories. We believe that our proposed strategy to determine the parameters governing the dynamics of rABPs can be applied to guide the design of microrobots with physical intelligence encoded during their fabrication.

Type 1 interferons promote Staphylococcus aureus nasal colonization by inducing phagocyte apoptosis

Staphylococcus aureus is an important human commensal which persistently colonizes up to 30% of the human population, predominantly within the nasal cavity. The commensal lifestyle of S. aureus is complex, and the mechanisms underpinning colonization are not fully understood. S. aureus can induce an immunosuppressive environment in the nasal tissue (NT) by driving IL-10 and IL-27 to facilitate nasal colonization, indicating that S. aureus has the capacity to modulate the local immune environment for its commensal habitation. Mounting evidence suggests commensal bacteria drive type 1 interferons (IFN-I) to establish an immunosuppressive environment and whilst S. aureus can induce IFN-I during infection, its role in colonization has not yet been examined. Here, we show that S. aureus preferentially induces IFN signaling in macrophages. This IFN-I in turn upregulates expression of proapoptotic genes within macrophages culminating in caspase-3 cleavage. Importantly, S. aureus was found to drive phagocytic cell apoptosis in the nasal tissue during nasal colonization in an IFN-I dependent manner with colonization significantly reduced under caspase-3 inhibition. Overall, loss of IFN-I signaling significantly diminished S. aureus nasal colonization implicating a pivotal role for IFN-I in controlling S. aureus persistence during colonization through its ability to induce phagocyte apoptosis. Together, this study reveals a novel strategy utilized by S. aureus to circumvent host immunity in the nasal mucosa to facilitate nasal colonization.

Maximum Power Tracking System for Photovoltaic Power Generation in Local Shadow Environment Based on Ant Colony Optimization Fuzzy Algorithm

Maximum Power Tracking System for Photovoltaic Power Generation in Local Shadow Environment Based on Ant Colony Optimization Fuzzy Algorithm

Charge and Spin Dynamics and Destabilization of Shallow Nitrogen-Vacancy Centers under UV and Blue Excitation.

Shallow nitrogen-vacancy (NV) centers in diamond offer opportunities to study photochemical reactions, including photogeneration of radical pairs, at the single-molecule regime. A prerequisite is a detailed understanding of charge and spin dynamics of NVs exposed to the short-wavelength light required to excite chemical species. Here, we investigate the charge and spin dynamics of shallow NVs under 445 and 375 nm illumination. With blue excitation, charge-state preparation is power-dependent, and modest spin initialization fidelity is observed. Under UV excitation, charge-state preparation is power-independent and no spin polarization is observed. Aging of NVs under prolonged UV exposure manifests in a reduced charge stability and spin contrast. We attribute this aging to modified local charge environments of near-surface NVs and identify distinct electronic traps only accessible at short wavelengths. Finally, we evaluate the prospects of NVs to probe photogenerated radical pairs based on measured sensitivities and outline possible sensing schemes.

Ni-Electrocatalytic CO2 Reduction Toward Ethanol.

The electroreduction of CO2 offers a sustainable route to generate synthetic fuels. Cu-based catalysts have been developed to produce value-added C2+ alcohols; however, the limited understanding of complex C-C coupling and reaction pathway hinders the development of efficient CO2-to-C2+ alcohols catalysts. Herein, a Cu-free, highly mesoporous NiO catalyst, derived from the microphase separation of a block copolymer,is reported, which achieves selective CO2 reduction toward ethanol with a Faradaic efficiency of 75.2% at -0.6V versus RHE. The dense mesopores create a favorable local reaction environment with CO2-rich and H2O-deficient interfaces, suppressing hydrogen evolution and maximizing catalytic activity of NiO for CO2 reduction. Importantly, the C1-feeding experiments, in situ spectroscopy, and theoretical calculations consistently show that the direct coupling of *CO2 and *COOH is responsible for C-C bond formation on NiO, and subsequent reduction of *CO2-COOH to ethanol is energetically facile through the *COCOH and *OC2H5 pathway. The unconventional C-C coupling mechanism on NiO, in contrast to the *CO dimerization on Cu, is triggered by strong CO2 adsorption on the polarized Ni2+-O2- sites. The work not only demonstrates a highly selective Cu-free Ni-based alternative for CO2-to-C2+ alcohols transformation but also provides a new perspective on C-C coupling toward C2+ synthesis.

Screening of Silver-Based Single-Atom Alloy Catalysts for NO Electroreduction to NH3 by DFT Calculations and Machine Learning.

Exploring NO reduction reaction (NORR) electrocatalysts with high activity and selectivity toward NH3 is essential for both NO removal and NH3 synthesis. Due to their superior electrocatalytic activities, single-atom alloy (SAA) catalysts have attracted considerable attention. However, the exploration of SAAs is hindered by a lack of fast yet reliable prediction of catalytic performance. To address this problem, we comprehensively screened a series of transition-metal atom doped Ag-based SAAs. This screening process involves regression machine learning (ML) algorithms and a compressed-sensing data-analytics approach parameterized with density-functional inputs. The results demonstrate that Cu/Ag and Zn/Ag can efficiently activate and hydrogenate NO with small Φmax(η), a grand-canonical adaptation of the Gmax(η) descriptor, and exhibit higher affinity to NO over H adatoms to suppress the competing hydrogen evolution reaction. The NH3 selectivity is mainly determined by the s orbitals of the doped single-atom near the Fermi level. The catalytic activity of SAAs is highly correlated with the local environment of the active site. We further quantified the relationship between the intrinsic features of these active sites and Φmax(η). Our work clarifies the mechanism of NORR to NH3 and offers a design principle to guide the screen of highly active SAA catalysts.

Pushing Theoretical Potassium Storage Limits of MXenes through Introducing New Carbon Active Sites.

Surface-driven capacitive storage enhances rate performance and cyclability, thereby improving the efficacy of high-power electrode materials and fast-charging batteries. Conventional defect engineering, widely-employed capacitive storage optimization strategy, primarily focuses on the influence of defects themselves on capacitive behaviors. However, the role of local environment surrounding defects, which significantly affects surface properties, remains largely unexplored for lack of suitable material platform and has long been neglected. As proof-of-concept, typical Ti3C2Tx MXenes are chosen as model materials owing to metallic conductivity and tunable surface properties, satisfying the requirements for capacitive-type electrodes. Using density functional theory (DFT) calculations, the potential of MXenes with modulated local atomic environment is anticipated and introducing new carbon sites found near pores can activate electrochemically inert surface, attaining record theoretical potassium storage capacities of MXenes (291 mAh g-1). This supposition is realized through atomic tailoring via chemical scissor within sublayers, exposing new sp3-hybridized carbon active sites. The resulting MXenes demonstrate unprecedented rate performance and cycling stability. Notably, MXenes with higher carbon exposure exhibit a record-breaking capacity over 200 mAh g-1 and sustain a capacity retention higher than 80% after 20 months. These findings underscore the effectiveness of regulating defects' neighboring environment and illuminate future high-performance electrode design.

Regulation of Environmental Responsibility by Multinational Enterprises: From the Perspective of Host States

With the vigorous development of the global economy, the global ecology and environment are deteriorating. As one of the main economic activities in the world, transnational corporations greatly promote the economic development of the home country and the host country. However, at the same time, when transnational corporations conduct business activities overseas, due to various reasons, their activities in the host country have a great impact on the surrounding environment, and have caused actual environmental harm to the local environment. This paper uses the method of case analysis and comparative analysis to study. Therefore, this paper discusses the environmental regulation of multinational enterprises from the perspective of the host country. It examines how host countries implement local environmental standards and the impact of MNEs activities on the local environment. The analysis includes a discussion of the effectiveness of the current regulatory framework and its ability to hold multinational corporations accountable for environmental degradation. At the same time, taking the environmental impact as an example, the problems existing in the current legal regulatory framework are pointed out. Finally, the paper proposes strategies to strengthen the environmental responsibility and sustainability practices of MNE operating in host countries.

A Native Bacillus Thuringiensis Strain with Higher Insecticidal Activity Against Adult Aedes Aegypti Than the Larvae

Mosquitoes of several species cause the deaths of millions of people annually, making them the major disease vectors. Bioinsecticide formulations derived from Bacillus thuringiensis are widely acknowledged as highly efficient, sustainable, environmentally friendly, and safe means of controlling insect pests. In this study, a strain of B. thuringiensis exhibiting significant efficacy in controlling Aedes aegypti was isolated from the local environment, identified, and physiologically characterized. The isolated B. thuringiensis strain exhibited positive insecticidal activity against the larvae and adult Aedes aegypti, causing mortality of the insect larvae at a rate of 3.33% and adult at 53.33 – 93.33% in 48 hours. Experiments conducted in a controlled laboratory setting showed that B. thuringiensis toxin exhibited higher levels of activity against the adult mosquito than the larvae. This study demonstrates that bioinsecticide formulation using B. thuringiensis as the active agent has the potential to effectively and sustainably manage larvae and adult Aedes aegypti.

Unraveling the Microstructure‐Property Relationship of Fe Single‐Atoms via Introducing Asymmetric P‐Coordination for Photocatalytic Hydrogen Evolution

AbstractThe local atomic environments of single‐atom photocatalysts play a decisive role in determining the solar‐to‐hydrogen energy conversion efficiency. However, controllably modulating the microstructure of single‐atom sites to enhance catalytic activity and deeply understanding the structure‐property relationship remain great challenges. Herein, electron‐rich P atoms are introduced to accurately regulate the local coordination environment and electronic configuration of Fe single atoms and construct a unique asymmetrical FeN3P2 motif into carbon nitride (FeN3P2‐CN) for significantly improving the photocatalytic H2 evolution activity and stability. Specifically, in the absence of noble metal cocatalyst and photosensitizer, the FeN3P2‐CN achieves a remarkable H2 evolution rate of 2668.5 µmol g−1 h−1 under visible light irradiation (λ > 420 nm), more than 105 times higher than that of unregulated FeN4 sample. Systematic characterizations and theoretical calculations unveil that the FeN3P2 single‐atom sites not only significantly broaden the photoabsorption region and facilitate the charge separation and interfacial transfer, but also efficiently promote adsorption and activation of H2O. This work paves a promising pathway to design novel single‐atom photocatalysts at the atomic level for achieving highly efficient water‐splitting performance.

Kids’ Environment and Health Cohort

This presentation discusses Kids’ Environment and Health Cohort (KEHC), a bespoke Administrative Data Research UK (ADR UK) funded linkage project. KEHC will be a comprehensive and yearly updated dataset for children born in England from 2006 onwards, integrating health, education, pregnancy, and environmental data. This integrates data from different administrative systems including the Office for National Statistics, the National Health Service, and the Department for Education as well as open environmental data. This presentation will outline the deterministic and probabilistic linkage methods utilised and the quality assurance undertaken through clerical review and bias analysis. Additionally, we will delve into the challenges encountered in the process of data ingest, linkage, and delivery due to the diverse origins and purposes of the collected data, as well as temporal disparities. In navigating the intricacies of multiple linkages, we will discuss our unique methods, including plans to use an indexing first approach. The first cohort of approximately 10 million children has been created to form the spine and further linkages to the 2011 and 2021 UK census data have been concluded. Linkages between address histories and open environmental data is ongoing. Linkage results have been promising, with high match rate and excellent quality. KEHC is a powerful example of how integrated data can be used for research for the public good. KEHC will provide a unique opportunity for academic researchers investigating the longitudinal effects of local environments on children’s health and educational outcomes and will become one of ADR UK’s flagship Research Ready Datasets.

Revitalisasi Bank Sampah Gesit Desa Rumah Gerat melalui Edukasi dan Penataan Sistem Operasional Bank Sampah

This community service activity aims to enhance the effectiveness of the "Bank Sampah Gesit" in Rumah Gerat Village through educational initiatives and operational system restructuring. The program includes educating participants on waste management concepts, types of recyclable materials, and effective operational management, followed by a Focus Group Discussion (FGD) to design improved operational systems. Using a one-shot case study approach with pretest-posttest assessments, this initiative successfully increased participants' knowledge and understanding of waste management principles and established a functional waste management system. This system includes the types of waste managed, waste deposit recording systems, and the roles of waste collectors and sponsors in sustaining the bank. Fully supported by the Research and Community Service Institute (LPPM) of Universitas Negeri Medan and in collaboration with Roda Hijau Kota Medan, this community service program encourages active community participation in environmental conservation efforts. The goal is for this initiative to inspire the residents of Rumah Gerat Village to manage waste more efficiently, positively impacting the local environment, and creating a cleaner and sustainable environment for future generations.

The local cooling potential of land restoration in Africa

Land restoration is becoming increasingly popular as a climate change mitigation and adaptation measure. It is suggested that resulting vegetation changes can impact the local surface temperature through biophysical processes such as albedo warming and evaporative cooling. Yet, the potential effect of land restoration on the local surface temperature in Africa remains uncertain. In this study, we use Terra MODIS time series of vegetation, albedo, and land surface temperature to determine vegetation-temperature relationships at a continental scale. We show that vegetation-albedo and vegetation-temperature relationships do not only vary spatially across Africa but also temporally over different time scales, with strong cooling effects in semi-arid environments. Furthermore, we predict that land restoration can decrease local land surface temperature by around 0.2 Kelvin on average. This study gives a more detailed insight into where future land restoration provides additional positive climate impacts, and where land restoration may instead warm the local environment.

Local Agendy 21 an Environmental Security in Naturally Valuable Areas

Areas with recognised natural values need special protection of environmental resources and cultural and architectural elements, as well as securing the living conditions of the local population and socio-economic activation. Especially in Local Agenda 21, which should consider such security, this task requires preparing comprehensive strategic documents. From an ecological and sociological perspective, this article looks at the situation of the local community in Poland. In this context, concern at sustainable development strategy, ecological security, discussion about sustainable development in national park territory, and human activities for the local environment. The article draws attention to the difficulties in local, sustainable development strategies and directions of activities involving the local community in ensuring natural and social order. In short, the analysis presents the importance of ecological security, the social situation in regions of natural protection, and the role of the local community in a strategy of sustainable development and ecological security.

Oscillations of the Local pH Reverses Silver Micromotors in H2O2

Asymmetric chemical reactions on the surfaces of colloidal particles are known to propel them into directional motion. The dynamics of such chemical micromotors are sensitive to their local chemical environments, which also continually evolve with the reactions on motor surfaces. This two‐way coupling between the motor dynamics and the local environment may result in complex nonlinear behaviors. As an example, we report that Janus Ag microspheres, which self‐propel in hydrogen peroxide (H2O2), spontaneously reverse their direction of motion two or more times. We hypothesize that two distinct chemical reactions between Ag and H2O2 drive the micromotor in opposite directions, and which reaction dominates depends on the local pH. Interestingly, the local pH near a Ag micromotor oscillates spontaneously in H2O2, likely due to a complex interplay between the kinetics of the reaction between Ag and H2O2 and the diffusion of chemical species. Consequently, the pH‐sensitive Ag micromotor reverses its direction of motion in response to these pH oscillations. This study introduces a new mechanism for regulating the speed and directionality of micromotors, highlights the potential of Ag micromotors in chemical sensing, and sheds new light on the interplay between chemical kinetics and micromotor dynamics.

Divergent ornamentation within a single population of the barn swallow.

Differential migration strategies favour different sets of characteristics, including sexually selected ornamentation. Such phenotypic variation is particularly evident in a population with partial migration, where migrants and non-migrants co-exist. Partial migration provides insights into the link between migration, local environment and ornamentation, although empirical studies remain scarce. Here, we studied the plumage traits of barn swallows (Hirundo rustica) in southern Japan, where both winterings and migrants breed sympatrically. We further examined this relationship with multiple isotopes (δ2H, δ13C, δ15N and δ34S), which provides insight into their moulting habitat. Among males, winterings and migrants differed in their morphological traits: wintering males had shorter wings, which suggests the high demand for flight apparatus in migratory birds. Moreover, wintering males had larger white tail spots and less colourful throat patches than migratory males, indicating ornament divergence between them. Wintering males had a significantly smaller isotopic space when examining the combinations of δ34S with the other isotopes compared to migratory males, which indicates a differential geographic range between them, perhaps because of the limited variation in the distance to the sea in wintering males. As in males, wintering females had a significantly smaller isotopic space than migrant females, but there were few morphological differences between migratory and wintering females. Instead, some morphological traits were related to isotope values in females. These results indicate sex-specific linkage between migration, local environment, and ornamentation.

Academia's Role in Climate Action: Enhancing Awareness and Reducing Environmental Impact of Academic Events

A clean environment is vital for both population health and the well-being of our planet (Brusseau et al., 2019). In-person gatherings, like academic conferences, significantly contribute to carbon emissions that harm the environment, highlighting the importance of finding opportunities to reduce these emissions (Tao et al., 2021). Cognizant of the environmental cost of our annual national in-person research team gathering, our team sought to minimize the environmental impact of our 2023 gathering while raising awareness among team members. Our actions included using reusable tableware, composting food waste, and hosting an education session by the local environment office. Not only did our efforts increase awareness among gathering attendees about the importance of considering environmental impact reduction opportunities in their work, but they also catalyzed similar efforts at two national conferences. Our team took the lead in developing an evaluation of the environmental impact of each national conference and surveyed over 150 conference attendees. We collected demographic information, travel mode to the conference, and attitudes about environmental harms via a digital conference application. We also observed environmental actions implemented by event organizers and venue hosts. A carbon emission score and frequency distributions of attitudes surrounding the environment were calculated. Where possible, a food waste assessment was conducted. Findings showed that event organizers made efforts to minimize the environmental impact of their event by selecting a venue whose management was interested in collaborating; by encouraging attendees to carpool and use reusable water bottles; by serving plant-based meals, and by minimizing single-use products. Findings also revealed that most conference attendees consider it important to reduce the environmental impact of their professional lives. Given the value of face-to-face interaction in facilitating knowledge exchange (Chan et al., 2023), it is important that organizers continue to make efforts to reduce carbon emissions when planning events.

Is the local environment more important than within-host interactions in determining coinfection?

Host populations often vary in the magnitude of coinfection they experience across environmental gradients. Furthermore, coinfection often occurs sequentially, with a second parasite infecting the host after the first has established a primary infection. Because the local environment and interactions between coinfecting parasites can both drive patterns of coinfection, it is important to disentangle the relative contributions of environmental factors and within-host interactions to patterns of coinfection. Here, we develop a conceptual framework and present an empirical case study to disentangle these facets of coinfection. Across multiple lakes, we surveyed populations of five damselfly (host) species and quantified primary parasitism by aquatic, ectoparasitic water mites and secondary parasitism by terrestrial, endoparasitic gregarines. We first asked if coinfection is predicted by abiotic and biotic factors within the local environment, finding that the probability of coinfection decreased for all host species as pH increased. We then asked if primary infection by aquatic water mites mediated the relationship between pH and secondary infection by terrestrial gregarines. Contrary to our expectations, we found no evidence for a water mite-mediated relationship between pH and gregarines. Instead, the intensity of gregarine infection correlated solely with the local environment, with the magnitude and direction of these relationships varying among environmental predictors. Our findings emphasize the role of the local environment in shaping infection dynamics that set the stage for coinfection. Although we did not detect within-host interactions, the approach herein can be applied to other systems to elucidate the nature of interactions between hosts and coinfecting parasites within complex ecological communities.