Intraguild interactions influence the structure and local dynamics of carnivore mammals’ assemblages. The potential effects of these interactions are often determined by the body size of competing members and may result in negative relationships in their abundance and, ultimately, lead to species exclusion or coexistence. The relative importance of interspecific interactions along with landscape characteristics in determining population patterns of understudied and threatened sympatric small carnivores, such as skunks, remains poorly documented. Therefore, we assessed the spatiotemporal variation in the abundance of American hog-nosed skunks Conepatus leuconotus and pygmy spotted skunks Spilogale pygmaea and the effect of interspecific interactions, resource availability, and habitat complexity on their local abundance in areas with the deciduous tropical forest south of the Mexican Pacific slope. We used presence-absence data for skunk species from three camera-trapping surveys between 2018 and 2020 in combination with Royle-Nichols occupancy models fitted in a Bayesian framework to estimate abundance, incorporating the effects of covariates related to the factors evaluated. We analyzed the relationship between the abundances of skunks using Bayesian Generalized Linear Models. Both skunk species showed significant differences in their abundances between seasons and between study sites. Overall, pygmy skunks were more abundant than hog-nosed skunks. We found negative relationships among the relative abundances of skunks during the dry seasons, but no evidence that local abundance is governed by the competitive dominance of the larger species. Patterns of skunk abundance were better explained by prey availability and other predictors related to habitat complexity, rather than interspecific interactions, since these models showed the highest predictive accuracies and strong positive and negative relationships. Our study highlights the underlying factors that determine the local abundance of these understudied and threatened small carnivores, allowing us to better understand the mechanisms that govern their coexistence for effective management and conservation of species in seasonal environments.