Local Co-occurrence Pattern Research Articles

Directional local co-occurrence patterns based on Haar-like filters

Directional local co-occurrence patterns based on Haar-like filters

Homogenization of species composition and species association networks are decoupled

AbstractAimEcological communities are composed of both species and the biotic relationships (interactions or spatial associations) among them. Biotic homogenization in species composition (i.e., increased site‐to‐site similarity) is recognized as a common consequence of global change, but less is known about how the similarity of species relationships changes over space and time. Does homogenization of species composition lead to homogenization of species relationships or are the dynamics of species relationships decoupled from changes in species composition?LocationWisconsin, USA.Time period1950–2012.Major taxa studiedVascular plants.MethodsWe used long‐term resurvey data to analyse changes in plant species association patterns between the 1950s and 2000s at 266 sites distributed among three community types in Wisconsin, USA. We used species associations (quantified via local co‐occurrence patterns) to represent one type of relationship among species. Species pairs that co‐occur more or less than expected by chance have positive or negative associations, respectively. We then measured beta diversity in both species composition and species association networks over time and space.ResultsShifts in species associations consistently exceeded the shifts observed in species composition. Less disturbed forests of northern Wisconsin have converged somewhat in species composition but little in species associations. In contrast, forests in central Wisconsin succeeding from pine barrens to closed‐canopy forests have strongly homogenized in both species composition and species associations. More fragmented forests in southern Wisconsin also tended to converge in species composition and in the species’ negative associations, but their positive associations diverged over the last half century. Species composition and associations are generally affected by a similar set of environmental variables. Their relative importance, however, has changed over time.Main conclusionsLong‐term shifts in species relationships appear to be decoupled from shifts in species composition despite being affected by similar environmental variables.

SEMANTIC SEGMENTATION OF AERIAL IMAGES IN URBAN AREAS WITH CLASS-SPECIFIC HIGHER-ORDER CLIQUES

Abstract. In this paper we propose an approach to multi-class semantic segmentation of urban areas in high-resolution aerial images with classspecific object priors for buildings and roads. What makes model design challenging are highly heterogeneous object appearances and shapes that call for priors beyond standard smoothness or co-occurrence assumptions. The data term of our energy function consists of a pixel-wise classifier that learns local co-occurrence patterns in urban environments. To specifically model the structure of roads and buildings, we add high-level shape representations for both classes by sampling large sets of putative object candidates. Buildings are represented by sets of compact polygons, while roads are modeled as a collection of long, narrow segments. To obtain the final pixel-wise labeling, we use a CRF with higher-order potentials that balances the data term with the object candidates. We achieve overall labeling accuracies of > 80%.

Co-occurrence Patterns along a Regional Aridity Gradient of the Subtropical Andes Do Not Support Stress Gradient Hypotheses

The stress gradient hypothesis posits that facilitation and stress are positively correlated. The hump-shaped hypothesis, on the contrary, proposes that facilitation is greater at intermediate stress levels. The relationship between facilitation and environmental stress is commonly studied at small spatial scales and/or considering few species; thus, the implications of facilitation at a community level remain poorly understood. Here, we analyzed local co-occurrence patterns of all plant species at 25 sites within the subtropical Andes to evaluate the role of facilitation and competition as drivers of community structure. We considered a wide latitudinal gradient (19–26°S) that incorporates great variation in aridity. No previous studies have attempted to study these patterns across such a broad scale in warm deserts. Each locality was sampled at two scales (quadrat and patch), and co-occurrence was analyzed via null models. Furthermore, we tested for a relationship between plant co-occurrences and environmental aridity. Resulting patterns depended on life form. When all species were considered, negative associations were found, indicating competition. Woody/cactus life forms tended to be associated across communities, suggesting that there is facilitation between these life forms. Additionally, and unlike previous studies, we found positive associations among shrubs. The strength of the association between woody species changed non-monotonically with aridity. Herbs showed an inverted hump-shaped relationship, albeit ranging mostly among neutral values. Independent of the association type exhibited by different life forms, our community level results do not support current stress gradient hypotheses.