Local Adaptation In Species Research Articles

Environmental seasonality and latitude drive clutch size diversity in female lizards across populations

Global patterns in clutch size variations across species have been linked to resource availability and seasonal climate change. However, our understanding of the specific local-scale drivers of clutch size diversity has remained unclear, especially among populations of ectotherms with relatively homogeneous genetic structures experiencing varying local environmental conditions. And understanding the specific local-scale drivers of clutch size diversity within species can provide insight into the local adaptation of species or the evolution of key life history traits. Here, we collected clutch size data of a wide-ranging female lizard (Eremias argus) from field observation and literature across populations of varying elevations and latitudes in China. We then used mixed-effects models to test the relationship between clutch size, body size, habitat type, elevation, latitudes, and climate conditions. Unsurprisingly, body size was positively correlated with clutch size variations across all populations. When we accounted for body size, females from populations at higher latitudes had larger clutches, while females in less variable rainfall environments had smaller clutches. Interestingly, we found that females occupying higher geographic gradients (e.g., latitude and elevation) with certain habitats (e.g., grasslands and farmlands) were associated with larger clutch sizes. Thus, our study shows support for similar global macroecological drivers of clutch size diversity among lizard species, and also suggests that female ectotherms might have different reproductive decisions employed in response to local climates to maximise population replacement.

Genomic Variation Landscape of the Model Salt Cress Eutrema salsugineum.

Eutrema salsugineum has long been used as the model for examining salt and other abiotic stress in plants. In addition to the forward genetics approaches widely used in the lab, natural variations undoubtedly will provide a rich genetic resource for studying molecular mechanisms underlying the stress tolerance and local adaptation of this species. We used 90 resequencing whole genomes of natural populations of this species across its Asian and North American distributions to detect the selection signals for genes involved in salt and other stresses at the species-range level and local distribution. We detected selection signals for genes involved in salt and other abiotic tolerance at the species level. In addition, several cold-induced and defense genes showed selection signals due to local adaptation in North America-NE Russia or northern China, respectively. These variations and findings provide valuable resources for further deciphering genetic mechanisms underlying the stress tolerance and local adaptations of this model species.

A synthesis of local adaptation to climate through reciprocal common gardens

Abstract Contrasts of differences within plant species and ecotypes are often best examined in ecology, evolution and genetics through provenance and biogeographical comparisons. Climate adaptation studies in plants are no exception and benefit from experiments that use these sets of factors. Reciprocal common gardens are a tool used to test for local adaptation in species to different contexts including climate. A synthesis of common gardens and intraspecific tests for climate adaptation was used to compile over 200 studies that explored the relative efficacy of this tool and the ecology of change. Exclusion criteria were applied to review this literature and to compile specific tests that explicitly examined climate, plants and reciprocity in gardens for a total of 70 independent instances. A meta‐analysis was used to test for consistency and significance of detecting ecotypes for the different categories of traits tested and by the transplanting of seeds or seedlings. This meta‐analysis provides clear evidence for plant adaptation to climate change because all significant effect size estimates were positive, relatively large, and both seed and seedling transplants demonstrated consistent evidence for local adaptation. Emergence and germination responses from seed transplant experiments and relative growth and biomass differences from seedling transplants provided particularly strong support. Synthesis. Reciprocal common gardens were a highly effective experimental design to test for ecotypic differentiation and for climate adaptation. Nonetheless, we propose that future studies clearly define whether ecotypes are being explicitly tested in common garden experiments to enable evidence syntheses and discovery, and we highlight the need for reciprocal climatic gardens to clearly test for continued capacity for local adaptation in response to divergent climate selection processes in many plant species.

Uncovering the role of a positive selection site of wax ester synthase/diacylglycerol acyltransferase in two closely related Stipa species in wax ester synthesis under drought stress.

Natural selection drives local adaptations of species to biotic or abiotic environmental stresses. As a result, adaptive phenotypic divergence can evolve among related species living in different habitats. However, the genetic foundation of this divergence process remains largely unknown. Two closely related alpine grass species, Stipa capillacea and Stipa purpurea, are distributed in different rainfall regions of northern Tibet. Here, we analyzed the drought tolerance of these two closely related Stipa species, and found that S. purpurea was more resistance to drought stress than S. capillacea. To further understand the genetic diversity behind their adaptation to drought environments, a comprehensive gene repertoire was generated using PacBio isoform and Illumina RNA sequencing technologies. Bioinformatics analyses revealed that differential transcripts were mainly enriched in the wax synthetic pathway, and a threonine residue at position 239 of WSD1 was identified as having undergone positive selection in S. purpurea. Using heterologous expression in the Saccharomyces cerevisiae mutant H1246, site-directed mutagenesis studies demonstrated that a positive selection site results in changes to the wax esters profile. This difference may play an important role in S. purpurea in response to drought conditions, indicating that S. purpurea has evolved specific strategies involving its wax biosynthetic pathway as part of its long-term adaptation to the Qinghai-Tibet Plateau.

The interaction between sex-specific selection and local adaptation in species without separate sexes.

Local adaptation in hermaphrodite species can be based on a variety of fitness components, including survival, as well as both female and male sex-functions within individuals. When selection via female and male fitness components varies spatially (e.g. due to environmental heterogeneity), local adaptation will depend, in part, on variation in selection through each fitness component, and the extent to which genetic trade-offs between sex-functions maintain genetic variation necessary for adaptation. Local adaptation will also depend on the hermaphrodite mating system because self-fertilization alters several key factors influencing selection and the maintenance of genetic variance underlying trade-offs between the sex-functions (sexually antagonistic polymorphism). As a first step to guide intuition regarding sex-specific adaptation in hermaphrodites, we develop a simple theoretical model incorporating the essential features of hermaphrodite mating and adaptation in a spatially heterogeneous environment, and explore the interaction between sex-specific selection, self-fertilization and local adaptation. Our results suggest that opportunities for sex-specific local adaptation in hermaphrodites depend strongly on the extent of self-fertilization and inbreeding depression. Using our model as a conceptual framework, we provide a broad overview of the literature on sex-specific selection and local adaptation in hermaphroditic plants and animals, emphasizing promising future directions in light of our theoretical predictions.This article is part of the theme issue 'Linking local adaptation with the evolution of sex differences'.

Very high MHC Class IIB diversity without spatial differentiation in the mediterranean population of greater Flamingos

BackgroundSelective pressure from pathogens is thought to shape the allelic diversity of major histocompatibility complex (MHC) genes in vertebrates. In particular, both local adaptation to pathogens and gene flow are thought to explain a large part of the intraspecific variation observed in MHC allelic diversity. To date, however, evidence that adaptation to locally prevalent pathogens maintains MHC variation is limited to species with limited dispersal and, hence, reduced gene flow. On the one hand high gene flow can disrupt local adaptation in species with high dispersal rates, on the other hand such species are much more likely to experience spatial variation in pathogen pressure, suggesting that there may be intense pathogen mediated selection pressure operating across breeding sites in panmictic species. Such pathogen mediated selection pressure operating across breeding sites should therefore be sufficient to maintain high MHC diversity in high dispersing species in the absence of local adaptation mechanisms. We used the Greater Flamingo, Phoenicopterus roseus, a long-lived colonial bird showing a homogeneous genetic structure of neutral markers at the scale of the Mediterranean region, to test the prediction that higher MHC allelic diversity with no population structure should occur in large panmictic populations of long-distance dispersing birds than in other resident species.ResultsWe assessed the level of allelic diversity at the MHC Class IIB exon 2 from 116 individuals born in four different breeding colonies of Greater Flamingo in the Mediterranean region. We found one of the highest allelic diversity (109 alleles, 2 loci) of any non-passerine avian species investigated so far relative to the number of individuals and loci genotyped. There was no evidence of population structure between the four major Mediterranean breeding colonies.ConclusionOur results suggest that local adaptation at MHC Class IIB in Greater Flamingos is constrained by high gene flow and high MHC diversity appears to be maintained by population wide pathogen-mediated selection rather than local pathogen-mediated selection. Further understanding of how pathogens vary across space and time will be crucial to further elucidate the mechanisms maintaining MHC diversity in species with large panmictic populations and high dispersal rates.

Reproductive strategies and population genetic structure ofFucus spp. across a northeast Atlantic biogeographic transition

Geographical discontinuities in the composition of species assemblages are often mirrored by genetic clines and local adaptation in species that extend across such biogeographic disjunction. Species distributed across such biogeographic discontinuities are thus more prone to develop genetic clines and adaptations to environmental variation. The northwest coast of France encompasses a biogeographic boundary between cold- and warm-temperate marine ecosystems. Distinct hydrographic features characterize northern and southern shores, promoting physical oceanographic breaks that can affect dispersal and connectivity between populations. Furthermore, mosaics of contrasting conditions may affect local patterns of species assemblages and potential adaptive pressures. Along this stretch of coast, the intertidal habitat is largely dominated by brown algae of the genus Fucus , key structuring species common along North Atlantic shorelines. Fucus spiralis , F. guiryi and F. vesiculosus are sister species with different mating systems. They have extensive sympatric geographical distributions and distinct but overlapping vertical distributions in the intertidal zone. We examined genetic structure and diversity across this major environmental transition zone using neutral microsatellite markers to investigate patterns of differentiation between populations of each species inhabiting the two different biogeographic regions. We found contrasting results between the dioecious species (F. vesiculosus ) and the two selfing hermaphroditic lineages (F. spiralis and F. guiryi ). Genetic differentiation of northern and southern populations of F. vesiculosus followed the expectation from a hypothetical oceanographic discontinuity across this biogeographical transition zone, but this was not the case for the two hermaphroditic species. The former had higher genetic diversity and structure along the distribution range investigated whereas selfing hermaphrodites had less variability and were not geographically structured. Our results suggest that genetic patterns are correlated with this biogeographical transition zone but this effect is dependent on mating system, a determining factor affecting population structure. Additionally, other factors such as intertidal elevation may also play a role in observed difference in genetic structuring.

Fish population responses to hydrological variation in a seasonal wetland in southeast México

ABSTRACT Hydrological variation differently affects fish species. In the present study, the response of local populations of 13 fish local species to hydrological variation in a tropical wetland was evaluated. The objectives were to analyze the abundance response of fish species with distinct life history strategies and to assess the role of hydrological variation on fish population patterns. We found that opportunistic strategists were favored by high hydrological variation in drought periods, the equilibrium strategists were related to stable habitats, and periodic strategists were regulated by floods and temperature. However, the life history strategies identified for some species in this study do not correspond to the classification reported in other studies. Our results highlight the importance to study the abundance responses of species at local and regional scales to identify variations in life-history strategies, which can reflect local adaptations of species to hydrological changes, this is useful in order to understand and predict the responses of fish populations to the local environment.

Analysing the effects of water quality on the occurrence of freshwater macroinvertebrate taxa among tropical river basins from different continents

Macroinvertebrates are globally used in environmental monitoring and assessment. However, due to environmental and biological evolution, local adaptations of species might occur. This can contribute to uncertainties in the extrapolation of familyspecific ecological models developed from one region to another. Thus, we aimed to determine if models can be extrapolated to other regions with similar climatic conditions and if a reliable model can be developed from a pooled dataset (consisting of data from different regions). The occurrence of five families was modelled based on physical-chemical water quality variables with classification trees using the data from three tropical river basins (Chaguana in Ecuador, Gilgel Gibe in Ethiopia and Cau in Vietnam). The relevance of each model was tested on complementary data from both the same and other river basins, to test specificity and universality. Furthermore, models with a pooled dataset were developed and tested. Model reliability was assessed based on chance-corrected agreement (Cohen's kappa, kappa) and percent agreement (correctly classified instances, CCI). Values of higher than 0.4 (kappa) and 70% (CCI) were used to classify models as good. Only the pollution sensitive taxon (Leptophlebiidae) resulted in reliable models for most cases. In general, responses of macroinvertebrates towards pollution were different among countries except for the pollution sensitive taxa. Thus, extrapolation of ecological models for sensitive taxa to another river basin with similar climatic and environmental conditions is possible. Nevertheless, this type of systematic analyses for all families is necessary to determine and minimize uncertainty in ecological assessment.

The Expression Plasticity of Hypoxia Related Genes in High-Altitude and Plains Nanorana parkeri Populations

For species that have a broad geographic distribution, adaptive variation may be attributable to gene expression plasticity. Nanorana parkeri is an anuran endemic to the southern Tibetan Plateau where it has an extensive altitudinal range(2850 to 5100 m asl). Low oxygen concentration is one of the main environmental characteristics of the Tibetan Plateau. Hypoxia-inducible factor α subunits(HIF-1α and HIF-2α, encoded by Endothelial PAS domain protein 1(EPAS1)) and associated genes(e.g., vascular endothelial growth factor(VEGF) and Erythropoietin(EPO)) play crucial roles in maintaining oxygen homeostasis. In this study, we compared the expression of HIF-1A, VEGF, EPAS1 and EPO mRNA between two populations of N. parkeri: one population inhabiting the native high altitudes, and the second living in, and being acclimated to, the lower plains(70 m asl). The expression of HIF-1A, VEGF and EPAS1 mRNA in the high altitude population were significantly higher than in the acclimated population, whereas there was no significant difference for EPO between two groups. Our results indicated that gene expression plasticity may make significant contributions to local adaptation of species that have broad altitudinal distributions. In addition, we deepen our understanding of the adaptive potential of this species by evaluating the experiments in the scope of its evolutionary history.

Functional decoupling between flowers and leaves in the Ameroglossum pernambucense complex can facilitate local adaptation across a pollinator and climatic heterogeneous landscape

Decoupling between floral and leaf traits is expected in plants with specialized pollination systems to assure a precise flower-pollinator fit, irrespective of leaf variation associated with environmental heterogeneity (functional modularity). Nonetheless, developmental interactions among floral traits also decouple flowers from leaves regardless of selection pressures (developmental modularity). We tested functional modularity in the hummingbird-pollinated flowers of the Ameroglossum pernambucense complex while controlling for developmental modularity. Using two functional traits responsible for flower-pollinator fit [floral tube length (TL) and anther-nectary distance (AN)], one floral trait not linked to pollination [sepal length (SL), control for developmental modularity] and one leaf trait [leaf length (LL)], we found evidence of flower functional modularity. Covariation between TL and AN was ca. two-fold higher than the covariation of either of these traits with sepal and leaf lengths, and variations in TL and AN, important for a precise flower-pollinator fit, were smaller than SL and LL variations. Furthermore, we show that previously reported among-population variation of flowers associated with local pollinator phenotypes was independent from SL and LL variations. These results suggest that TL and AN are functionally linked to fit pollinators and sufficiently decoupled from developmentally related floral traits (SL) and vegetative traits (LL). These results support previous evidences of population differentiation due to local adaptation in the A.pernambucense complex and shed light on the role of flower-leaf decoupling for local adaptation in species distributed across biotic and abiotic heterogeneous landscapes.

A tale of two seas: contrasting patterns of population structure in the small-spotted catshark across Europe

Elasmobranchs represent important components of marine ecosystems, but they can be vulnerable to overexploitation. This has driven investigations into the population genetic structure of large-bodied pelagic sharks, but relatively little is known of population structure in smaller demersal taxa, which are perhaps more representative of the biodiversity of the group. This study explores spatial population genetic structure of the small-spotted catshark (Scyliorhinus canicula), across European seas. The results show significant genetic differences among most of the Mediterranean sample collections, but no significant structure among Atlantic shelf areas. The data suggest the Mediterranean populations are likely to have persisted in a stable and structured environment during Pleistocene sea-level changes. Conversely, the Northeast Atlantic populations would have experienced major changes in habitat availability during glacial cycles, driving patterns of population reduction and expansion. The data also provide evidence of male-biased dispersal and female philopatry over large spatial scales, implying complex sex-determined differences in the behaviour of elasmobranchs. On the basis of this evidence, we suggest that patterns of connectivity are determined by trends of past habitat stability that provides opportunity for local adaptation in species exhibiting philopatric behaviour, implying that resilience of populations to fisheries and other stressors may differ across the range of species.

Context-dependent Impacts of a Non-native Ecosystem Engineer, the Pacific Oyster Crassostrea gigas

The introduction of non-native species represents unprecedented large-scale experiments that allow us to examine ecological systems in ways that would otherwise not be possible. Invasion by novel ecological types into a community can press a system beyond the bounds normally seen and can reveal community interactions, local drivers and limits within systems that are otherwise hidden by coevolution and a long evolutionary history among local players, as well as local adaptation of species. The success of many invaders is attributed to their ability to thrive in a wide range of habitat types and physical conditions, setting the stage for direct examination of ecological impacts of a species across a range of habitat and community contexts. Bivalves are well-known ecosystem engineers, especially oysters, which are the target of wild-caught fisheries and aquaculture. The Pacific oyster, Crassostrea gigas, is grown worldwide for aquaculture, and is presently invading shores on virtually every continent. As a consequence, this non-native species is having large impacts on many systems, but the types of impacts are system specific, and greatly depend on substrate type, how physiologically stressful the environment is for intertidal zone species, and the presence of native engineering species. A novel type of engineering effect is identified for this non-native species, whereby it alters not only the physical environment, but also the thermal environment of the community it invades. The impacts of engineering by this non-native species will depend not only on whether it facilitates or inhibits species but also on the trophic level and ecological role of the species affected, and whether similar ecological types are found within the system.

Sufficient Conditions for Multiple Niche Polymorphism

Sufficient Conditions for Multiple Niche Polymorphism