Linker Geometry Research Articles

One-Step Ethylene Purification by an Ethane-Screening Metal-Organic Framework.

Efficient purification of ethylene (C2H4) from ethane (C2H6) is a crucial but daunting task for the chemical industry given their similar physical natures and molecular dimensions. Reversed capture of C2H6 from C2H6/C2H4 dual-mixtures can be expected to directly yield high-purity C2H4 through a one-step separation unit, but it remains a daunting challenge. Here, we skillfully target an unusual "electrostatic-driven linker microrotation" (EDLM) in a Zr-MOF through coupling dual-ligands having electron-withdrawing/donating groups (e.g., F and CH3 motifs). EDLM triggered microrotation of linker geometry and screening sites not only enhanced structural rigidity and hydrophobic nature, etc., but also effectively purified C2H4 through reversely trapping C2H6. Under ambient conditions, 1 kg of activated 2 adsorbents directly produces 7.2 L of C2H4 with over 99.9%+ purity in a single breakthrough operation starting from the equimolar C2H6/C2H4 cracked mixtures. Geometrical models and simulations have revealed that EDLM-derived H-bonding interaction and microrotation of linker geometry, synergistically customized C2H6-selective screening sites and pore inert for reversed C2H6 capture and improved surface hydrophobicity. Adsorption isotherms, modeling simulations, and breakthrough tests based on pressure swing adsorption (PSA) conditions have jointly elucidated the underlying separation properties for C2H4 purification. The enhanced hydrophobic nature, cycling durability, and separation property awarded 2 a new benchmark adsorbent to purify the olefin/paraffin mixtures.

Inter-MOF hybrid (IMOFH): A concise analysis on emerging core–shell based hierarchical and multifunctional nanoporous materials

Abstract Architecting a selective as well as high yielding catalyst has always been a challenge. Porous coordination polymers (PCPs) or popularly perceived as metal organic frameworks (MOF) are well endowed with tunable porosity, high specific surface area and easy functionalization as they are being constructed with plethora of possibilities; varying linker geometry, connectivity and functional groups along with inorganic secondary building unit (SBUs) having diverse topologies; making MOFs an extremely versatile inorganic–organic hybrid complexes for various emerging applications. Yet conventional MOF based materials are deficit in obtaining desired functionality and selectivity in a single crystal entity, hence to circumvent this setback, Inter-MOF Hybrid (IMOFH) compounds are explored for introducing advanced functionality in a single MOF crystal and this review intends to highlight the recent advances on IMOFH core–shell type architectures as an emerging class of hierarchical and multi-functional hybrid. In addition to it this review epitomizes a holistic exploration of rational design involving lattice choices, synthetic routes including forefront applications like; heterogeneous catalysis, adsorption and photocatalysis by IMOFH core–shell materials.

A Tetratopic Phosphonic Acid for the Synthesis of Permanently Porous MOFs: Reactor Size-Dependent Product Formation and Crystal Structure Elucidation via Three-Dimensional Electron Diffraction.

Following the strategy of installing porosity in coordination polymers predefined by linker geometry, we employed the new tetratopic linker molecule 1,1,2,2-tetrakis[4-phosphonophenyl]ethylene (H8TPPE) for the synthesis of new porous metal phosphonates. A high-throughput study was carried out using Ni2+ and Co2+ as metal ions, and a very strong influence of the reactor size on the product formation is observed while maintaining the same reaction parameters. Using small autoclaves (V = 250 μL), single crystals of isostructural mononuclear complexes of the composition [Ni(H3DPBP)2(H2O)4] (1) and [Co(H3DPBP)2(H2O)4] (2) are formed. They contain the linker molecule H4DPBP (4,4'-diphosphonobenzophenone), which is formed in situ by oxidation of H8TPPE. Using autoclaves with a volume of V = 2 mL, two new 3D metal-organic frameworks (MOFs) of composition [Ni2(H4TPPE)(H2O)6]·4H2O (CAU-46) and [Co2(H4TPPE)(H2O)4]·3H2O (CAU-47) were isolated in bulk quantities, and their crystal structures were determined from three-dimensional electron diffraction (3D ED) and powder X-ray diffraction data. Using even larger autoclaves (V = 30 mL), another 3D MOF of the composition [Co2(H4TPPE)]·6H2O (Co-CAU-48) was obtained, and a structure model was established via 3D ED measurements. Remarkably, the isostructural compound [Ni2(H4TPPE)]·9H2O (Ni-CAU-48) is only obtained indirectly, i.e., via thermal activation of CAU-46. As the chosen linker geometry leads to the formation of MOFs, topological analyses were carried out, highlighting the different connectivities observed in the three frameworks. Porosity of the compounds was proven via water sorption experiments, resulting in uptakes of 126 mg/g (CAU-46), 105 mg/g (CAU-47), 210 mg/g (Ni-CAU-48), and 109 mg/g (Co-CAU-48).

STRUT LINKER GEOMETRY IMPROVING MECHANICAL BEHAVIOR OF CORONARY STENT

Stent is one of the common solution that is offered to the patient with atherosclerosis. An ideal stent should have good mechanical and biological properties. This research aims to analyze how importance strut linker geometry affect mechanical behavior of stent especially on recoil percentage, foreshortening percentage and fatigue safety factor prediction using finite element analysis. The result showed that strut linker geometry would specify the mechanical behavior.

Further Investigations into Rigidity-Activity Relationships in BisQAC Amphiphilic Antiseptics.

Thirty-six biscationic quaternary ammonium compounds were efficiently synthesized in one step to examine the effect of molecular geometry of two-carbon linkers on antimicrobial activity. The synthesized compounds showed strong antimicrobial activity against a panel of both Gram-positive and Gram-negative bacteria, including methicillin-resistant Staphylococcus aureus (MRSA). While the linker geometry showed only a modest correlation with antimicrobial activity, several of the synthesized bisQACs are promising potential antiseptics due to good antimicrobial activity (MIC≤2 μM) and their higher therapeutic indices compared to previously reported QACs.

9,9′-Spirobifluorene based zinc coordination polymers: a study on linker geometry and topology

We report four Zn-based coordination polymers (CPs), synthesized from three spirobifluorene (SBF) tetracarboxylate ligands, possessing different topologies and dimensionalities.

Fragment-derived inhibitors of human N-myristoyltransferase block capsid assembly and replication of the common cold virus.

Rhinoviruses are the pathogens most often responsible for the common cold, and are a frequent cause of exacerbations in asthma, chronic obstructive pulmonary disease and cystic fibrosis. Here we report discovery of IMP-1088, a picomolar dual inhibitor of the human N-myristoyltransferases NMT1 and NMT2, and use it to demonstrate that pharmacological inhibition of host cell N-myristoylation rapidly and completely prevents rhinoviral replication without inducing cytotoxicity. Identification of cooperative binding between weak-binding fragments led to rapid inhibitor optimization through fragment reconstruction, structure-guided fragment linking, and conformational control over linker geometry. We show that inhibition of co-translational myristoylation of a specific virus-encoded protein (VP0) by IMP-1088 potently blocks a key step in viral capsid assembly, delivering low nanomolar antiviral activity against multiple rhinovirus strains, poliovirus and foot-and-mouth disease virus, and protection of cells against virus-induced killing, highlighting the potential of host myristoylation as a drug target in picornaviral infections.

The influence of the secondary building linker geometry on the photochromism of naphthalenediimide-based metal–organic frameworks

The photochromism of three MOFs based on NDI chromophores is mainly induced by two kinds of non-covalent intermolecular interactions.

Toward Topology Prediction in Zr-Based Microporous Coordination Polymers: The Role of Linker Geometry and Flexibility

A design strategy based on geometric analysis of linker shape and flexibility is developed in the context of achieving predictable topology of tetratopic-linker based Zr microporous coordination polymers (MCPs). Tetratopic linkers are categorized into tetrahedral, planar square, or planar rectangular groups based on symmetry with an emphasis on linker flexibility. A prediction framework solely based on linker shape and cluster connectivity derived from this strategy is applied to all 18 reported tetratopic-linker based Zr MCPs, and their determined topologies fit well into the scheme. Two new Zr MCPs (UMCM-312 and UMCM-313) are produced using designed linkers based on the strategy to test the robustness of prediction. UMCM-312 contains a biphenyl-core based tetratopic linker to target tetrahedral shape, and UMCM-313 takes advantage of a perylene based tetratopic linker to achieve rectangular shape. The experimentally determined topologies confirm predictions. It is thus demonstrated that the uncertainty o...

Stereoselective Halogenation of Integral Unsaturated C-C Bonds in Chemically and Mechanically Robust Zr and Hf MOFs.

Metal–organic frameworks (MOFs) containing ZrIV‐based secondary building units (SBUs), as in the UiO‐66 series, are receiving widespread research interest due to their enhanced chemical and mechanical stabilities. We report the synthesis and extensive characterisation, as both bulk microcrystalline and single crystal forms, of extended UiO‐66 (Zr and Hf) series MOFs containing integral unsaturated alkene, alkyne and butadiyne units, which serve as reactive sites for postsynthetic modification (PSM) by halogenation. The water stability of a Zr–stilbene MOF allows the dual insertion of both −OH and −Br groups in a single, aqueous bromohydrination step. Quantitative bromination of alkyne‐ and butadiyne‐containing MOFs is demonstrated to be stereoselective, as a consequence of the linker geometry when bound in the MOFs, while the inherent change in hybridisation and geometry of integral linker atoms is facilitated by the high mechanical stabilities of the MOFs, allowing bromination to be characterised in a single‐crystal to single‐crystal (SCSC) manner. The facile addition of bromine across the unsaturated C−C bonds in the MOFs in solution is extended to irreversible iodine sequestration in the vapour phase. A large‐pore interpenetrated Zr MOF demonstrates an I2 storage capacity of 279 % w/w, through a combination of chemisorption and physisorption, which is comparable to the highest reported capacities of benchmark iodine storage materials for radioactive I2 sequestration. We expect this facile PSM process to not only allow trapping of toxic vapours, but also modulate the mechanical properties of the MOFs.

Designing Cell-Targeted Therapeutic Proteins Reveals the Interplay between Domain Connectivity and Cell Binding

The therapeutic efficacy of cytokines is often hampered by severe side effects due to their undesired binding to healthy cells. One strategy for overcoming this obstacle is to tether cytokines to antibodies or antibody fragments for targeted cell delivery. However, how to modulate the geometric configuration and relative binding affinity of the two domains for optimal activity remains an outstanding question. As a result, many antibody-cytokine complexes do not achieve the desired level of cell-targeted binding and activity. Here, we address these design issues by developing a computational model to simulate the dynamics and binding kinetics of natural and engineered fusion proteins such as antibody-cytokine complexes. To verify the model, we developed a modular system in which an antibody fragment and a cytokine are conjugated via a DNA linker that allows for programmable linker geometry and protein spatial configuration. By assembling and testing several anti-CD20 antibody fragment-interferon α complexes, we showed that varying the linker length and cytokine binding affinity controlled the magnitude of cell-targeted signaling activation in a manner that agreed with the model predictions, which were expressed as dose-signaling response curves. The simulation results also revealed that there is a range of cytokine binding affinities that would achieve optimal therapeutic efficacy. This rapid prototyping platform will facilitate the rational design of antibody-cytokine complexes for improved therapeutic outcomes.

Organic linker geometry controlled synthesis of coordination polymer spheres and their thermal transformation to yolk–shell metal oxides

Unitary and multinary metal–carboxylic acid coordination polymers (CP) were prepared by utilization of the geometric angle of carboxylic groups in organic linkers. Further calcination of these CP would generate unitary and multinary metal oxides with the yolk–shell structure.

Bismuth Tri‐ and Tetraarylcarboxylates: Crystal Structures, In Situ X‐ray Diffraction, Intermediates and Luminescence

A systematic investigation of the systems Bi(3+)/carboxylic acid/HNO3 for the tri- and tetracarboxylic acids pyromellitic acid (H4Pyr), trimellitic acid (H3Tri) and trimesic acid (H3BTC) acid led to the discovery of five new bismuth carboxylates. Structural characterisation allowed the influence of the linker geometry and the Bi(3+):linker molar ratio in the starting solution on the crystal structure to be determined. The crystallisation of three selected compounds was investigated by in situ energy-dispersive X-ray diffraction. Three new crystalline intermediates were observed within minutes, and two of them could be isolated by quenching of the reaction mixture. Their crystal structures were determined from laboratory and synchrotron X-ray powder diffraction data and allowed a possible reaction pathway to be established. In depth characterisation of the luminescence properties of the three bismuth pyromellate compounds was carried out. Fluorescence and phosphorescence could be assigned to (mainly) ligand- and metal-based transitions. The polymorphs of Bi(HPyr) exhibit different luminescence properties, although their structures are very similar. Surprisingly, doping of the three host structures with Eu(3+) and Tb(3+) ions was only successful for one of the polymorphs.

Synthesis of tetrahydroxybiphenyls and tetrahydroxyterphenyls and their evaluation as amyloid-β aggregation inhibitors

3,3′,4,4′-Tetrahydroxybiphenyl and three isomeric 3,3″,4,4″-tetrahydroxyterphenyls with varying geometries around the central phenyl ring have been synthesized and evaluated for their in vitro activity against aggregation of Alzheimer’s amyloid-β peptide (Aβ). Results from Congo red spectral-shift assays reveal that all four compounds successfully inhibit association of Aβ monomers. For the tetrahydroxyterphenyls, efficacy varies with linker geometry: the ortho-arrangement affords the most successful inhibition and the para-geometry the least, perhaps due to differing abilities of these compounds to bind Aβ. Of the four small molecules studied, 3,3′,4,4′-tetrahydroxybiphenyl is the most effective inhibitor, reducing Aβ aggregation by 50% when present in stoichiometric concentrations.

High-throughput microwave-assisted discovery of new metal phosphonates

A systematic study was carried out to investigate the influence of linker geometry, metal ionic radius as well as the nature of the counter ions on the structure formation of metal tetraphosphonates. Two tetraphosphonic acids p- and m-(H2O3PCH2)2N-CH2-C6H4-CH2-N(CH2PO3H2)2, six metal ions (Ca(2+), Mn(2+), Co(2+), Ni(2+), Zn(2+), and Cd(2+)) and two different counter ions (Cl(-) and NO3(-)) were employed using high throughput methods. Microwave (MW)-assisted heating led to the discovery of ten new metal-phosphonates which crystallize in three different crystal structures. The combination of direct methods and force field calculations allowed us to establish the crystal structures. The counter ion and the ionic radii of the metal ions have a profound influence on the crystallinity and the formed crystal structure. All compounds were characterized in detail by thermogravimetric analyses, IR spectroscopy and magnetic susceptibility measurements. The proton conductivity of two selected compounds is also reported.

The Influence of Linker Geometry in Bis(3‐hydroxy‐N‐methyl‐pyridin‐2‐one) Ligands on Solution Phase Uranyl Affinity

Seven water-soluble, tetradentate bis(3-hydroxy-N-methyl-pyridin-2-one) (bis-Me-3,2-HOPO) ligands were synthesized that vary only in linker geometry and rigidity. Solution-phase thermodynamic measurements were conducted between pH 1.6 and pH 9.0 to determine the effects of these variations on proton and uranyl cation affinity. Proton affinity decreases by introduction of the solubilizing triethylene glycol group as compared to unsubstituted reference ligands. Uranyl affinity was found to follow no discernable trends with incremental geometric modification. The butyl-linked 4 li-Me-3,2-HOPO ligand exhibited the highest uranyl affinity, consistent with prior in vivo decorporation results. Of the rigidly-linked ligands, the o-phenylene linker imparted the best uranyl affinity to the bis-Me-3,2-HOPO ligand platform.

Influence of Linker Geometry on Uranyl Complexation by Rigidly Linked Bis(3-hydroxy-N-methyl-pyridin-2-one)

A series of bis(3-hydroxy-N-methyl-pyridin-2-one) ligands was synthesized, and their respective uranyl complexes were characterized by single crystal X-ray diffraction analyses. These structures were inspected for high-energy conformations and evaluated using a series of metrics to measure co-planarity of chelating moieties with each other and the uranyl coordination plane, as well as to measure coordinative crowding about the uranyl dication. Both very short (ethyl, 3,4-thiophene and o-phenylene) and very long (alpha,alpha'-m-xylene and 1,8-fluorene) linkers provide optimal ligand geometries about the uranyl cation, resulting in planar, unstrained molecular arrangements. The planarity of the rigid linkers also suggests there is a degree of pre-organization for a planar coordination mode that is ideal for uranyl-selective ligand design. Comparison of intramolecular N(amide)-O(phenolate) distances and (1)H NMR chemical shifts of amide protons supports earlier results that short linkers provide the optimal geometry for intramolecular hydrogen bonding.