Linear Alkyne Research Articles

Mechanistic Insights into the Synergistic Effect of Palladium(0) and Copper(I) on the Selective Transformation of Isocyanate to Indole.

Density functional theory calculations have been utilized to investigate the synergistic effect of palladium(0) and copper(I) catalyzed selective formation of allylated indole from (2-alkynyl)-phenylisocyanate and allyl methyl carbonate. The main competing reaction yielding the N-allyl carbamate was also considered. Calculated results indicate that using the Pd(0)-complex alone, the generation of indole is kinetically much less favored than producing the N-allyl carbamate compound. However, the co-addition of Cu(I) catalyst can considerably decrease the barrier for the intramolecular cyclization step, leading to the formation of the indole product. Analysis of the cyclization process suggests that Cu(I) complex can act as a Lewis acid to activate the linear alkyne group via a π-coordination manner prior to the formation of a 5-membered ring transition state toward indole formation. Altogether, the mechanistic insights revealed in the present study aim at a better understanding of the mechanism and the factors governing the selectivity in synergistic Pd/Cu catalysis.

Bioorthogonal Hydroamination of Push-Pull-Activated Linear Alkynes.

A bioorthogonal reaction between N,N-dialkylhydroxylamines and push-pull-activated halogenated alkynes is described. We explore the use of rehybridization effects in activating alkynes, and we show that electronic effects, when competing stereoelectronic and inductive factors are properly balanced, sufficiently activate a linear alkyne in the uncatalyzed conjugative retro-Cope elimination reaction while adequately protecting it against cellular nucleophiles. This design preserves the low steric profile of an alkyne and pairs it with a comparably unobtrusive hydroxylamine. The kinetics are on par with those of the fastest strain-promoted azide-alkyne cycloaddition reactions, the products regioselectively formed, the components sufficiently stable and easily installed, and the reaction suitable for cellular labeling.

Bioorthogonal Hydroamination of Push–Pull‐Activated Linear Alkynes

AbstractA bioorthogonal reaction between N,N‐dialkylhydroxylamines and push–pull‐activated halogenated alkynes is described. We explore the use of rehybridization effects in activating alkynes, and we show that electronic effects, when competing stereoelectronic and inductive factors are properly balanced, sufficiently activate a linear alkyne in the uncatalyzed conjugative retro‐Cope elimination reaction while adequately protecting it against cellular nucleophiles. This design preserves the low steric profile of an alkyne and pairs it with a comparably unobtrusive hydroxylamine. The kinetics are on par with those of the fastest strain‐promoted azide‐alkyne cycloaddition reactions, the products regioselectively formed, the components sufficiently stable and easily installed, and the reaction suitable for cellular labeling.

Cd-MOF: specific adsorption selectivity for linear alkyne (propyne, 2-butyne and phenylacetylene) molecules.

The selective adsorption of APPT-Cd-MOF 1 for propyne, 2-butyne and phenylacetylene was confirmed by single-crystal analysis. In addition, the selective adsorption performance of Cd-MOF for C3H4/C3H6/C3H8 was investigated. The matching of the functionality and size/shape between porous materials and guest molecules clarified the specific recognition of 1 for linear alkyne molecules.

Direct Observation of a Photochemical Alkyne-Allene Reaction and of a Twisted and Rehybridized Intramolecular Charge-Transfer State in a Donor-Acceptor Dyad.

The excited-state dynamics of an aniline-triazine electron donor-acceptor dyad with an alkyne spacer has been investigated using a combination of ultrafast broadband mid-IR and visible transient absorption and fluorescence spectroscopies. The transient IR data reveal the occurrence of an efficient alkyne to allene isomerization of the spacer with a time constant increasing from a few hundreds of femtoseconds to a few picoseconds with solvent viscosity. This process is faster than the vibrational cooling of the Franck-Condon excited state, indicative of nonequilibrium dynamics. The transient electronic absorption and fluorescence data evidence that this transformation is accompanied by a charge separation between the donor and the acceptor subunits. The allene character of the spacer implies an orthogonal orientation of the donor and acceptor moieties, similar to that proposed for twisted intramolecular charge-transfer states. Such states are often invoked in the excited-state dynamics of donor-acceptor dyads, but their involvement could never be unambiguously evidenced spectroscopically. The alkyne-allene isomerization involves not only a torsional motion but also a bending of the molecule due to the sp to sp2 rehybridization of one of the alkyne carbon atoms. This twisted and rehybridized intramolecular charge transfer ("TRICT") state decays back to the planar and linear alkyne ground state on a time scale decreasing from a few hundred to ten picoseconds upon going from weakly to highly polar solvents. The different solvent dependencies reveal that the dynamics of the allene buildup are controlled by the structural changes, whereas the decay is limited by the charge recombination step.

(1E,5E)-2,5-Dibromocyclododeca-1,5-dien-9-yne

The title compound, C12H14Br2, was prepared by bromination/dehydrobromination ofE,E,Z-cyclododecatriene. The crystal is composed ofC2-symmetrical molecules with anEconformation of the bromoalkene fragments and nearly linear alkyne units. The torsion angles in the ring suggest significant ring strain.

Elemental labelling and mass spectrometry for the specific detection of sulfenic acid groups in model peptides: a proof of concept

Oxidative transformation of cysteine thiol groups into different functional groups is considered a significant posttranslational modification of great importance in pathological and physiological processes. A cysteine sulfenic acid (SA) residue is the transient state for thiol group oxidation and it can react with free thiols to form disulfide bonds or can be further oxidized with reactive oxygen/reactive nitrogen species (ROS/RNS) to form sulfinic and sulfonic acids. The increase in ROS/RNS concentrations is correlated to age-related diseases such as cancer and Alzheimer's disease. Since the formation of SA represents a transient state of oxidation of thiols, its formation can be considered a redox-sensitive sensor for the presence of ROS/RNS. Thereby, the detection of the short-lived SA will provide greater insight into the redox-mediated events that alter the structure and function of peptides and proteins. The aim of this study is to provide a new strategy for the highly sensitive and specific detection of SA in peptides as a proof of concept. For this aim, SA was firstly generated in model peptides on oxidation with H2O2 and then captured by the linear alkyne β-ketoester (KE) previously linked to a lanthanide (Ln)-containing chelator (Ln-DOTA, where DOTA is 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid). The linking of the KE to DOTA was performed by click chemistry, resulting in a new reagent (Ln-DOTA-KE) that permits highly sensitive elemental (inductively coupled plasma) and molecular (electrospray) mass spectrometric detection. The new reagent (Ln-DOTA-KE) reacts specifically with SA, offering improved reactivity at physiological pH, facile derivatization and a cell-membrane-permeable compound that has promising future applications. Graphical Abstract A new derivatizing reagent for specific detection of sulphenic acid (SA) generated in model peptides by oxidation of cysteine groups is presented in this work.

One-Pot Synthesis of Benzene-Fused Medium-Ring Ketones: Gold Catalysis-Enabled Enolate Umpolung Reactivity.

Enolate umpolung reactivities offer valuable and potentially unique alternatives over the enolate counterparts for the construction of ubiquitous carbonyl compounds. We disclose here that N-alkenoxypyridinium salts, generated readily upon gold-catalyzed additions of protonated pyridine N-oxide to C-C triple bonds of unactivated terminal alkynes, display versatile enolate umpolung chemistry upon heating and react with tethered arene nucleophiles in an SN2' manner. In a synthetically efficient one-pot, two-step process, this chemistry enables expedient preparation of valuable benzo-fused seven-/eight-membered cyclic ketones, including those of O-/N-heterocycles, from easily accessible aryl-substituted linear alkyne substrates. The reaction yields can be up to 87%.

ChemInform Abstract: Rearrangements of Alkyne and 1,3‐Diyne in Transition Metal Center Forming Small Ring Complexes

AbstractReview: 81 refs.

Block‐brush copolymers via ROMP and sequential double click reaction strategy

AbstractWe report an efficient way, sequential double click reactions, for the preparation of brush copolymers with AB block‐brush architectures containing polyoxanorbornene (poly (ONB)) backbone and poly(ε‐caprolactone) (PCL), poly(methyl methacrylate) (PMMA) or poly(tert‐butyl acrylate) (PtBA) side chains: poly(ONB‐g‐PMMA)‐b‐poly(ONB‐g‐PCL) and poly(ONB‐g‐PtBA)‐b‐poly(ONB‐g‐PCL). The living ROMP of ONB affords the synthesis of well‐defined poly(ONB‐anthracene)20‐b‐poly (ONB‐azide)5 block copolymer with anthryl and azide pendant groups. Subsequently, well‐defined linear alkyne end‐functionalized PCL (PCL‐alkyne), maleimide end‐functionalized PMMA (PMMA‐MI) and PtBA‐MI were introduced onto the block copolymer via sequential azide‐alkyne and Diels‐Alder click reactions, thus yielding block‐brush copolymers. The molecular weight of block‐brush copolymers was measured via triple detection GPC (TD‐GPC) introducing the experimentally calculated dn/dc values to the software. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011

Synthesis of di-, tri- and tetranuclear platinum(II) and copper(I) acetylide complexes

Heterobimetallic { cis-[Pt](μ-σ,π-C CPh) 2}[Cu(N CMe)]BF 4 ( 3a: [Pt] = (bipy)Pt, bipy = 2,2′-bipyridine; 3b: [Pt] = (bipy′)Pt, bipy′ = 4,4′-dimethyl-2,2′-bipyridine) is accessible by the reaction of cis-[Pt](C CPh) 2 ( 1a: [Pt] = (bipy)Pt, 1b: [Pt] = (bipy′)Pt]) with [Cu(N CMe) 4]BF 4 ( 2). Substitution of N CMe by PPh 3 ( 4) can be realized by the reaction of 3a with 4, whereby [{ cis-[Pt](μ-σ,π-C CPh) 2}Cu(PPh 3)]BF 4 ( 5) is formed. On prolonged stirring of 3 and 5, respectively, N CMe and PPh 3 are eliminated and tetrametallic {[{ cis-[Pt](η 2-C CPh) 2}Cu] 2}(BF 4) 2 ( 6) is produced. Addition of an excess of N CMe to 6 gives heterobimetallic 3a. When instead of N CMe or PPh 3 chelating molecules such as bipy ( 7) are reacted with 3a then the heterobimetallic π-tweezer molecule [{ cis-[Pt](μ-σ,π-C CPh) 2}Cu(bipy)]BF 4 ( 8) is formed. Treatment of 8 with another equivalent of 7 produced [Cu(bipy 2)]BF 4 ( 9) along with [Pt](C CPh) 2. However, when 3b is reacted with 1b in a 1:1 molar ratio then 10 and 11 of general composition [{[Pt](C CPh) 2} 2Cu]BF 4 are formed. These species are isomers and only differ in the binding of the PhC C units to copper(I). A possible mechanism for the formation of 10 and 11 is presented. The solid state structures of 6, 10 and 11 are reported. In 11 the [{ cis-[Pt](μ-σ,π-C CPh) 2} 2Cu] + building block is set-up by two nearly orthogonal positioned bis(alkynyl) platinum units which are connected by a Cu(I) ion, whereby the four carbon–carbon triple bonds are unsymmetrical coordinated to Cu(I). In trimetallic 10 two cis-[Pt](C CPh) 2 units are bridged by a copper(I) center, however, only one of the two PhC C ligands of individual cis-[Pt](C CPh) 2 fragments is η 2-coordinated to Cu(I) giving rise to the formation of a [(η 2-C CPh) 2Cu] + moiety with a linear alkyne–copper–alkyne arrangement (alkyne = midpoint of the C C triple bond). In 6 two almost parallel oriented [Pt](C CPh) 2 planes are linked by two copper(I) ions, whereby two individual PhC C units, one associated with each Pt building block, are symmetrically π-coordinated to Cu.

Tuning the Thermotropic and Lyotropic Properties of Liquid‐Crystalline Terpyridine Ligands

A rational synthetic strategy is developed to provide compact and simple terpyridine (terpy) mesogens that show liquid-crystallinity both as pure compounds and in organic solution (amphotropic compound). The use of a central 4-methyl-3,5-diacylaminophenyl platform equipped with two lateral aromatic rings, each bearing three appended aliphatic chains, allows connection of a 2,2':6',2''-terpyridine fragment through a polar group such as an ester, amide, or flat conjugated alkyne linker. For the T(12)ester and T(12)amide scaffolds, the mesophase is best described as a lamellar phase, in which the molecules self-assemble into columnar stacks held together in layers. In the T(12)amide case, the additional amide link results in significant stabilization of the lamellar phase. The driving forces for the appearance of columnar ordering are the hydrogen-bonding interactions of the amide groups, which induce head-to-tail pi-stacking of the terpy subunits. Replacing the polar linker by a nonpolarized but linear alkyne spacer, as in the T(12)ethynyl compound, provides a columnar mesophase organized in a rectangular lattice of p2gg symmetry. In this arrangement, two nondiscotic molecules arranged into dimers by hydrogen bonding and pi-pi stacking pile up in a head-to-tail manner to form columns. In addition, the T(12)amide compound proves to be an excellent gelator of cyclohexane, linear alkanes, and DMSO. The resulting robust and transparent gels are birefringent and formed by large aggregates that are readily aligned by shear-flow. TEM and freeze-fracture microscopy reveal that the gels have an original layered morphology made of fibers.

Studies of Targeting and Intracellular Trafficking of an Anti-Androgen Doxorubicin−Formaldehyde Conjugate in PC-3 Prostate Cancer Cells Bearing Androgen Receptor-GFP Chimera

The synthesis of a doxorubicin-formaldehyde conjugate bound to the nonsteroidal anti-androgen cyanonilutamide, via a cleavable tether, and binding of the construct to cell free androgen receptor (AR) as a function of tether design were previously reported. Cyanonilutamide bearing a linear alkyne tether bound to the AR better than other designs. Fluorescence microscopy studies of binding of the lead targeted drug, as well as various tethered cyanonilutamides, to the AR and subsequent trafficking of the resulting AR complex in live PC3 prostate cancer cells transfected with AR-green fluorescent protein (GFP) chimera are now described. Cyanonilutamide and cyanonilutamide bonded to a linear alkyne tether caused translocation of AR-GFP to the nucleus. In general, the ability of tethered cyanonilutamides to cause translocation paralleled their binding affinity for the AR. However, a noncleavable form of the lead cyanonilutamide-doxorubicin-formaldehyde conjugate bound to AR-GFP but the resulting complex did not translocate to the nucleus. Binding was apparent from the drugs inhibition of Mibolerone-induced translocation. Direct observation of anthraquinone fluorescence of targeted drug in PC3 cells showed initial cytosolic localization, independent of AR expression, with predominant nuclear localization after sufficient time for release of drug from the targeting moiety. The results indicate that doxorubicin-formaldehyde conjugate bonded to cyanonilutamide via a cleavable linear tether enters PC3 cells, resides in cytosol, binds to the AR if present, and ultimately releases doxorubicin or a doxorubicin derivative to the nucleus.

Neutral and Cationic Alkyl and Alkynyl Complexes of Lanthanum: Synthesis, Stability, and Cis-Selective Linear Alkyne Dimerization

Neutral triazacyclononane−amide lanthanum dialkyl and dialkynyl complexes were synthesized and structurally characterized. A cationic triazacyclononane−amide lanthanum monoalkyl species was generated and found to be highly active (tof > 100 h-1) in the rare cis-selective catalytic linear dimerization of phenylacetylene.

Gaseous alkyne ions

AbstractUsing the relative abundance of metastable ions, collisional activation spectra, field ionization kinetic measurements, isotopic labelling, appearance energy and kinetic energy release data, it is shown that linear alkyne radical cations with more than six carbon atoms do not isomerize to equilibrating structures prior to decomposition. At the shortest ion lifetimes the molecular ions of linear alkynes decompose mainly by simple β‐bond fission which allows an unequivocal localization of the triple bond. At medium ion lifetimes fragmentation occurs predominantly via a McLafferty rearrangement, while at long ion lifetimes competing alkyl losses prevail. These alkyl losses occur via cyclic intermediates leading to thermochemically stable cycloalkenyl ions. All these reactions occur with a high specificity with respect to the carbon and hydrogen atoms involved and are preceded by little or no hydrogen exchange reactions.