PDF HTML阅读 XML下载 导出引用 引用提醒 环境DNA在长江江豚监测中的应用 DOI: 作者: 作者单位: 1. 南京农业大学无锡渔业学院, 江苏 无锡 214128;2. 中国水产科学研究院淡水渔业研究中心, 江苏 无锡 214128 作者简介: 吴昀晟(1992-),男,硕士研究生.E-mail:wysh6666@126.com 通讯作者: 中图分类号: S931 基金项目: 江苏省长江江豚繁育项目(苏财农2016-36号);中国水产科学研究院基本科研业务费项目(2017HY-XKQ0201);修复向家坝库区渔业资源及保护长江珍稀特有物种合作项目(F02西江保护区江豚迁入及驯养). The application of environmental DNA in the monitoring of the Yangtze finless porpoise, Neophocaena phocaenoides asaeorientalis Author: Affiliation: 1. Wuxi Fisheries College, Nanjing Agricultural University, Wuxi 214128, China;2. Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214128, China Fund Project: 摘要 | 图/表 | 访问统计 | 参考文献 | 相似文献 | 引证文献 | 资源附件 | 文章评论 摘要:为了从水体环境中提取到高质量的eDNA环境DNA(environmental DNA,eDNA),应用于长江中长江江豚()的分布调查,本研究比较了滤膜孔径和水样保存方式对eDNA获取的影响,同时对比了eDNA技术与传统调查法对长江江豚的检测结果。结果显示水样抽滤时间与滤膜孔径大小呈负相关关系,且都可以检出目标生物;水样采集后需在6 h内完成抽滤处理,或在冷藏条件下短期保存48 h;长江流域江苏段中观测到长江江豚出现的8个检测点均检测出长江江豚eDNA,而在10个未观测到长江江豚的水域中有3个检测出其eDNA。研究结果表明,相比传统目视监测方法,eDNA技术在长江江豚监测中不仅具有较高的准确性,还具有更高的灵敏性,可作为长江江豚种群调查的有效辅助检测工具。 Abstract:The Yangtze finless porpoise, (YFP) is the flagship of aquatic protection species in the Yangtze River in China. The number of Yangtze finless porpoises is continuously decreasing because their living conditions are affected by human factors. Determining the distribution of the finless porpoises is necessary to protect them; however, surveys all along the Yangtze River are time-consuming and expensive. Environmental DNA (eDNA) technology used for the detection of organisms is economical, efficient, accurate, sensitive, and non-invasive and can narrow the scope of investigation, which allows limited conservation funds to be used more efficiently. It has already been applied to detect and estimate the distribution of endangered or invasive aquatic species. Environmental DNA technology often deals with a small amount of degraded and short DNA fragments, which implies that maximizing the eDNA yield is required to improve the accurate detection of the target organism from turbid stream systems. In this study, we compared the effects of four different pore-sized filters (10 μm, 5 μm, 1 μm, 0.45 μm) on the filtration time of eDNA during its extraction from stream water. Also, we compared the eDNA yield from water samples stored under two different conditions (room temperature 20℃, refrigerated 4℃) over a 14 day period. Results showed that the target eDNA was detected from the four different pore-sized filters; however, the filtration time was negatively correlated with the pore sizes of the filters. Considering the filtration time, the combination of a large pore-sized filter (5 μm) and a high volume of water (1 L) from the samples is a good choice to extract eDNA from the Yangtze River. Different storage methods and times significantly affected the eDNA yield. Thus, our results also support the recommendation that the water samples from the Yangtze River should be filtered within 6 hours of collection at room temperature or be stored at 4℃ for a short period of time (i.e., 48 hours). The eDNA concentration in the water samples dropped below the threshold for detection when they were stored at room temperature for 10 days or at 4℃ for 14 days; thus, the eDNA in the water samples is not suited for long-term preservation. Compared with traditional field investigations, the eDNA survey exhibited a 100% detection rate from the Yangtze river in the Jiangsu Province where the finless porpoise has emerged. Three positive results were also detected from 10 survey points where the finless porpoise has not yet been observed. The fitted curve between the number of finless porpoises and the eDNA yield was built to estimate the biomass of the porpoises within an area of water. Although eDNA production and degradation is affected by many environmental factors such as temperature, pH, and microbial communities, the technology was still more sensitive than traditional field investigations for the detection of the Yangtze finless porpoise in the Yangtze River. 参考文献 相似文献 引证文献
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