Lettuce Accessions Research Articles

Genome-wide association study of salt tolerance at the seed germination stage in lettuce.

Developing lettuce varieties with salt tolerance at the seed germination stage is essential since lettuce seeds are planted half an inch deep in soil where salt levels are often highest in the salinity-affected growing regions. Greater knowledge of genetics and genomics of salt tolerance in lettuce will facilitate breeding of improved lettuce varieties with salt tolerance. Accordingly, we conducted a genome-wide association study (GWAS) in lettuce to identify marker-trait association for salt tolerance at the seed germination stage. The study involved 445 diverse lettuce accessions and 56,820 single nucleotide polymorphism (SNP) markers obtained through genotype-by-sequencing technology using lettuce reference genome version v8. GWAS using two single-locus and three multi-locus models for germination rate (GR) under salinity stress, 5 days post seeding (GR5d_S) and a salinity susceptibility index (SSI) based on GR under salinity stress and control conditions, 5 days post seeding (SSI_GR5d) revealed 10 significant SNPs on lettuce chromosomes 2, 4, and 7. The 10 SNPs were associated with five novel QTLs for salt tolerance in lettuce, explaining phenotyping variations of 5.85%, 4.38%, 4.26%, 3.77%, and 1.80%, indicating the quantitative nature of these two salt tolerance-related traits. Using the basic local alignment search tool (BLAST) within 100 Kb upstream and downstream of each of the 10 SNPs, we identified 25 salt tolerance-related putative candidate genes including four genes encoding for major transcription factors. The 10 significant salt tolerance-related SNPs and the 25 candidate genes identified in the current study will be a valuable resource for molecular marker development and marker-assisted selection for breeding lettuce varieties with improved salt tolerance at the seed germination stage.

Leveraging Observations of Untrained Panelists to Screen for Quality of Fresh-Cut Romaine Lettuce

Fresh-cut romaine lettuce’s high perishability challenges ready-to-eat (RTE) salad production. Selecting cultivars less prone to browning and decay is crucial for extending shelf life. Traditional quality evaluation methods using instrumentation and trained panelists are time-consuming and logistically complex. This study investigated the effectiveness of untrained volunteers in assessing fresh-cut romaine lettuce quality. Given that the average consumer in the USA is familiar with the flavor characteristics of romaine lettuce, this study proposed to investigate the value of having untrained volunteers discern the quality of fresh-cut romaine lettuce. Therefore, six romaine lettuce accessions (Green Forest, King Henry, Parris Island Cos, PI 491224, SM13-R2, and Sun Valley) were assessed for sensory quality attributes (browning, green color, decay, and overall quality) and compared with instrumentation analyses (gas composition including O2 and CO2, electrolyte leakage, and color). The results showed significant quality differences (p < 0.05) among the accessions, with some seasonal variability. Very importantly, the consumers’ (n = 159) assessments revealed similar results to those produced by either instrumentation or a trained panel. The consumers provided sensory scores that allowed for the grouping of accessions based on their postharvest quality, which efficiently matched their pedigree relationship. In conclusion, ad hoc consumer panels can be an effective way to characterize the quality of romaine lettuce for RTE salads.

Screening Subtropical Lettuce Accessions for Heat Tolerance by Incorporating Accelerated Shelf Life Testing

Lettuce (Lactuca sativa L.) is grown worldwide, from temperate to subtropical climates. Spring season production in humid, subtropical regions, such as southern Florida, is characterized by rising ambient temperatures that can stress lettuce to prematurely bolt and lose shelf life. The objectives of this research were 1) to identify genetic variability in heat tolerance and shelf life among lettuce types and accessions grown under humid, subtropical conditions, and 2) to understand the genotype × environment (G × E) interaction to estimate shelf life of these lettuce accessions. Five lettuce types (romaine, crisphead, butterhead, leaf, and Latin) were grown under commercial conditions in the Everglades Agricultural Area near Belle Glade, FL, USA, for five field experiments over two seasons. Lettuce heads were evaluated at harvest, and subsets were transported to a local commercial grower/shipper for vacuum-cooling and storage at 15 °C according to previously determined protocols for accelerated shelf life testing. Visual appearance ratings were made across harvests and storage time points to segregate lettuce accessions with an estimated marketable shelf life >14 days. The breeding lines tested in this research had head weight and marketability comparable to commercial cultivars. Notably, the crisphead accessions 50113, 60157, 60159, and H1098 had the highest estimated and actual shelf life of more than 21 days, with no presence of bolting or tipburn. Meanwhile, romaine, butterhead, leaf, and Latin types had accessions with estimated and actual shelf life ranging from 14 to 28 days and no presence of bolting or tipburn. A G × E analysis indicated that this interaction is significant; therefore, breeders should consider analyzing G × E when developing new cultivars with good horticultural characteristics, longer shelf life, and most importantly, adaptation to warmer humid, subtropical conditions.

A WOX homolog disrupted by a transposon led to the loss of spines and contributed to the domestication of lettuce.

The loss of spines is one of the most important domestication traits for lettuce (Lactuca sativa). However, the genetics and regulation of spine development in lettuce remain unclear. We examined the genetics of spines in lettuce using a segregating population derived from a cross between cultivated and wild lettuce (Lactuca serriola). A gene encoding WUSCHEL-related homeobox transcription factor, named as WOX-SPINE1 (WS1), was identified as the candidate gene controlling the spine development in lettuce, and its function on spines was verified. A CACTA transposon was found to be inserted into the first exon of the ws1 allele, knocking out its function and leading to the lack of spines in cultivated lettuce. All lettuce cultivars investigated have the nonfunctional ws1 gene, and a selection sweep was found at the WS1 locus, suggesting its important role in lettuce domestication. The expression levels of WS1 were associated with the density of spines among different accessions of wild lettuce. At least two independent loss-of-function mutations in the ws1 gene caused the loss of spines in wild lettuce. These findings provide new insights into the development of spines and facilitate the exploitation of wild genetic resources in future lettuce breeding programs.

Heat-tolerant Lettuce Germplasm (Lactuca sativa L.) Identified in Romaine and Butterhead Types for Warmer Plantings

Warmer temperatures during crop production are not desirable for a cool-season crop such as lettuce (Lactuca sativa L.). Lettuce is among the top 10 most consumed vegetables in the United States. Production of this vegetable is concentrated mostly in temperate areas of California, and during the wintertime in Arizona and Florida as a result of their mild climatic conditions. Heat-tolerant cultivars are needed for the leafy vegetable industry to continue thriving. However, there is very little information on heat-tolerant germplasms of lettuce that can be used as a source to improve heat tolerance in lettuce. This is particularly important in romaine and butterhead lettuce, which are two morphological types with increasing demand in the market. Therefore, research was conducted to identify germplasm that performs acceptably in warmer regions in the western United States. This investigation also aimed to understand the reaction of varieties to different environments, which could help plant breeders select and evaluate lettuce plants during the breeding process. Twenty-three and 25 accessions of romaine and butterhead lettuce, respectively, were planted in five trials near Holtville, CA, USA: Five Points, CA, USA, under warmer temperatures and Salinas, CA, USA, under cooler temperatures. Romaine genotypes Bambi, Blonde Lente a Monter, Medallion MT, and Red Eye Cos; and butterhead genotypes Butter King and Margarita had no bolting, an acceptable head weight, short cores, and acceptable head height. Head weight and related traits (including core length, height, width, etc.) and heat-related disorders were significantly different across multiple experiments, indicating genetic variation. The major component of the phenotypic variation in these experiments was a result of environmental factors. Therefore, plant breeders may still need to evaluate progeny in multiple trials and multiple locations to select heat-tolerant romaine and butterhead lettuce effectively.

A comprehensive lettuce variation map reveals the impact of structural variations in agronomic traits

BackgroundAs an important vegetable crop, cultivated lettuce is grown worldwide and a great variety of agronomic traits have been preserved within germplasm collections. The mechanisms underlying these phenotypic variations remain to be elucidated in association with sequence variations. Compared with single nucleotide polymorphisms, structural variations (SVs) that have more impacts on gene functions remain largely uncharacterized in the lettuce genome.ResultsHere, we produced a comprehensive SV set for 333 wild and cultivated lettuce accessions. Comparison of SV frequencies showed that the SVs prevalent in L. sativa affected the genes enriched in carbohydrate derivative catabolic and secondary metabolic processes. Genome-wide association analysis of seven agronomic traits uncovered potentially causal SVs associated with seed coat color and leaf anthocyanin content.ConclusionOur work characterized a great abundance of SVs in the lettuce genome, and provides a valuable genomic resource for future lettuce breeding.

Genome-wide association mapping reveals loci for enzymatic discoloration on cut lettuce

Enzymatic discoloration is a major postharvest flaw in cut lettuce, leading to significant food waste. Identifying the genetic determinants and factors associated with this physiological process can facilitate the development of cost-effective and environmentally friendly methods that minimize the loss of product. In this study, a diverse panel of 376 lettuce accessions was investigated for the relationship between enzymatic discoloration and agronomic traits, as well as the genetic characteristics of the discoloration process. The discoloration did not correlate significantly with plant developmental rate, resistance to yellow spot malady, bacteria leaf spot, or downy mildew; but it showed a significant although not strong correlation with the initial levels of brownness (r = −0.146, p < 0.05) and greenness (r = −0.255, p < 0.001) in midribs, and the deterioration rate (r = 0.391, p < 0.001) of fresh-cut lettuce packaged in modified atmosphere. The trait exhibited a relatively high broad-sense heritability (H2 = 0.669) in four trials conducted at three locations in three years. The genome-wide association study (GWAS) revealed the significant effects of six loci (qDis1.1, qDis4.1, qDis6.1, qDis8.1, qDis8.2, and qDis9.1) defined by eight SNP markers. A total of 965 genes were predicted in the identified chromosomal regions, with three quinone oxidation-reduction (redox) enzymes and 19 transcription factors being potentially the most promising candidate genes involved in regulating postharvest discoloration.

Development and application of Single Primer Enrichment Technology (SPET) SNP assay for population genomics analysis and candidate gene discovery in lettuce.

Single primer enrichment technology (SPET) is a novel high-throughput genotyping method based on short-read sequencing of specific genomic regions harboring polymorphisms. SPET provides an efficient and reproducible method for genotyping target loci, overcoming the limits associated with other reduced representation library sequencing methods that are based on a random sampling of genomic loci. The possibility to sequence regions surrounding a target SNP allows the discovery of thousands of closely linked, novel SNPs. In this work, we report the design and application of the first SPET panel in lettuce, consisting of 41,547 probes spanning the whole genome and designed to target both coding (~96%) and intergenic (~4%) regions. A total of 81,531 SNPs were surveyed in 160 lettuce accessions originating from a total of 10 countries in Europe, America, and Asia and representing 10 horticultural types. Model ancestry population structure clearly separated the cultivated accessions (Lactuca sativa) from accessions of its presumed wild progenitor (L. serriola), revealing a total of six genetic subgroups that reflected a differentiation based on cultivar typology. Phylogenetic relationships and principal component analysis revealed a clustering of butterhead types and a general differentiation between germplasm originating from Western and Eastern Europe. To determine the potentiality of SPET for gene discovery, we performed genome-wide association analysis for main agricultural traits in L. sativa using six models (GLM naive, MLM, MLMM, CMLM, FarmCPU, and BLINK) to compare their strength and power for association detection. Robust associations were detected for seed color on chromosome 7 at 50 Mbp. Colocalization of association signals was found for outer leaf color and leaf anthocyanin content on chromosome 9 at 152 Mbp and on chromosome 5 at 86 Mbp. The association for bolting time was detected with the GLM, BLINK, and FarmCPU models on chromosome 7 at 164 Mbp. Associations were detected in chromosomal regions previously reported to harbor candidate genes for these traits, thus confirming the effectiveness of SPET for GWAS. Our findings illustrated the strength of SPET for discovering thousands of variable sites toward the dissection of the genomic diversity of germplasm collections, thus allowing a better characterization of lettuce collections.

Genetic determinants of lettuce resistance to drop caused by Sclerotinia minor identified through genome-wide association mapping frequently co-locate with loci regulating anthocyanin content.

GWAS identified 19 QTLs for resistance to Sclerotinia minor, 11 of them co-locating with red leaf color. Lower disease incidence was observed in red and dark red accessions. Lettuce (Lactuca sativa L.), one of the most economically important vegetables grown primarily in moderate climates around the world, is susceptible to many diseases including lettuce drop caused by the soilborne fungus Sclerotinia minor. Complete resistance to S. minor has not been identified in cultivated lettuce or its wild relatives. We conducted five experiments over 4 years with the diversity panel of almost 500 lettuce accessions to evaluate their response to the pathogen in an artificially infested field. The lowest disease incidence (DI) was observed in cultivars Eruption, Infantry, and Annapolis (median DI of 12.1-17.5%), while the highest DI was recorded for cultivars Reine des Glaces, Wayahead, and line FL. 43007 (median DI of 81.0-95.2%). Overall, significantly lower DI was observed in red and dark red accessions compared to those with a lower anthocyanin content. Genome-wide association mapping identified 19 QTLs for resistance to S. minor, 21 for the presence of red leaf color or its variations caused by the anthocyanin content, and one for the green color intensity. Eleven of the QTLs for disease resistance were located within 10Mb of the loci associated with red color or anthocyanin content identified in this diversity panel. The frequent, non-random co-location of QTLs, together with the lower DI observed in red and dark red accessions suggests that lettuce interaction with S. minor may be partly influenced by anthocyanins. We have identified RLL2 and ANS, the genes of the anthocyanin biosynthesis pathway that co-locate with resistance QTLs, as candidates for functional studies to ascertain the involvement of anthocyanins in lettuce resistance against S. minor. Resistance QTLs closely linked with QTLs for anthocyanin content could be used to develop lettuce with a relatively high partial resistance and red color, while those not associated with anthocyanins could be used to develop partially resistant cultivars of green color.

Lettuce Germplasm in Humid Subtropical Environments Tolerant to Postharvest Development of Pink Rib Disorder

Pink rib discoloration or pinking in the midribs of lettuce (Lactuca sativa) leaves is a stress-induced disorder that leads to crop loss worldwide. Maintaining recommended field and postharvest conditions reduces its incidence but does not eliminate the issue. During the past decade, research has identified the tolerance of this disorder among lettuce types and cultivars grown in cooler climates. However, tolerance to pink rib among lettuce types grown in humid subtropical climates is unknown; therefore, it is necessary to screen lettuce germplasm under these growing conditions. During this study, diverse lettuce accessions were planted for early-season, mid-season, and late-season harvests over two seasons in Belle Glade, FL, USA. Harvested midribs were wounded to induce pink rib, stored for 6 to 9 days at 5 °C and &gt;95% relative humidity, and rated for severity using a 5-point subjective scale. Genotype × environment interactions were evaluated to understand the environmental factors that favor the development of pink rib during storage and between planting seasons. Pink rib severity increased during storage, with the highest increase observed after 3 to 4 days in both seasons. After 9 days of storage, lettuce accessions with the least pink rib for each leaf type were identified. The lowest pink rib ratings after 9 days of storage were “moderate” (rating of 3) for crisphead, Latin, and romaine, “slight” (rating of 2) for butterhead types, and “none” (rating of 1) for leaf types. Additionally, pink rib severity increased among accessions during the late spring season harvest when field temperatures were higher and daylight hours were extended. The lettuce germplasm with low susceptibility to pink rib is promising to breed lettuce lines for future research.

Genetic and physiological determinants of lettuce partial resistance to Impatiens necrotic spot virus.

Impatiens necrotic spot virus (INSV) is a major pathogen currently threatening lettuce (Lactuca sativa L.) production in the coastal areas of California. The virus is transmitted by the western flower thrips (Frankliniella occidentalis Pergande). We have tested a diversity panel of almost 500 lettuce accessions for disease incidence (DI) in 12 field experiments performed over 7 years. This set of accessions was also assessed for thrips feeding damage (TFD), the rate of plant development (PD), and the content of chlorophyll (SPAD) and anthocyanins (ACI) to determine their effect on resistance to INSV. In addition, recombinant inbred lines from two biparental mapping populations were also evaluated for DI in field experiments. The mean DI in 14 field experiments ranged from 2.1% to 70.4%. A highly significant difference in DI was observed among the tested accessions, with the overall lowest DI detected in the red color cultivars, Outredgeous Selection, Red Splash Cos, Infantry, Sweet Valentine, Annapolis, and Velvet. Multiple linear regression models revealed a small but significant effect (p < 0.005) of the four analyzed determinants on DI. Accessions with lower DI values had slower plant development (PD, r = 0.352), higher ACI content (r = -0.284), lower TFD (r = 0.198), and lower SPAD content (r = 0.125). A genome-wide association study revealed 13 QTLs for DI located on eight out of the nine lettuce chromosomes (the exception was chr. 8). The most frequently detected QTL (qINSV2.1) was located on chr. 2. Several of the QTLs for DI were in the same genomic areas as QTLs for PD, ACI, and SPAD. Additional three QTLs for DI on chr. 5 and 8 were identified using linkage mapping performed on two biparental mapping populations. The work highlights the genetic basis of partial resistance to INSV and reveals the relationship between resistance, the host physiology, and the thrips vector. Results of this study are an important steppingstone toward developing cultivars with increased resistance against INSV.

Identifying Lettuce Accessions for Efficient Use of Phosphorus in Hydroponics

Lettuce (Lactuca sativa L.) is the most common leafy vegetable produced hydroponically in the United States. Although hydroponic systems are advantageous due to lower pest and disease pressure, and reduced water and nutrient requirements, the increasing prices of fertilizers, including phosphorus (P), still influences the profitability of hydroponic production of lettuce. Characterizing lettuce germplasm capable of producing high yield using less P inputs may help reduce fertilizer use, production costs, and P loads in wastewater. In this study, 12 lettuce accessions were grown in four experiments in a nutrient film technique system. In the first two experiments, the treatments consisted of two P concentrations (3.1 and 31 mg·L−1). Lettuce cultivated with 3.1 mg·L−1 of P had variable shoot and root biomass, root–shoot ratio, P uptake efficiency, and P utilization efficiency, indicating the existence of genetic variation. Five accessions (‘Little Gem’, 60183, ‘Valmaine’, BG19-0539, and ‘Green Lightning’) were considered efficient to P because produced similar shoot biomass with the low and high P treatments. In the third and fourth experiments, the treatments consisted of two P sources (monosodium phosphate (NaH2PO4) and tricalcium phosphate [TCP; Ca3(PO4)2]. Initially, extra 5 mM of calcium (Ca) was added to the TCP solution to reduce the TCP solubility and, hence, P bioavailability to plants. All accessions produced similar shoot and root weight with both treatments, indicating that the TCP treatment did not cause low-P stress to the plants. After, the extra Ca concentration added to TCP was increased to 10 mM, resulting in low-P stress and a significant reduction in shoot weight of all accessions. Despite the severe P stress, ‘Little Gem’ and 60183 were among the accessions with the least shoot weight reduction in the TCP treatment. Variability was observed in root biomass root–shoot ratio among accessions under the TCP treatment, suggesting that lettuce accessions responded differently to P stress conditions. The genetic variation for P use efficiency (PUE) and PUE-related traits in lettuce grown hydroponically suggests the feasibility of breeding new lettuce cultivars from elite lettuce germplasm adapted to low P availability in hydroponics.

Identification of Quantitative Trait Loci Associated with Bacterial Leaf Spot Resistance in Baby Leaf Lettuce.

Spring mix is a popular packaged salad that contains lettuce (Lactuca sativa L.) as one of its main ingredients. Plants for baby leaf lettuce (BLL) production are grown at very high densities, which enhances the occurrence of bacterial leaf spot (BLS) caused by Xanthomonas hortorum pv. vitians (Xhv), a disease that can make the crop unmarketable. The market demands disease-free, high-quality BLL all year round. Growing highly BLS-resistant cultivars will reduce loss of yield and quality, thus minimizing economic detriment to lettuce and spring mix growers. The research objectives were to identify lettuce accessions resistant to BLS and associated quantitative trait loci (QTL). A total of 495 lettuce accessions were screened with six isolates (BS0347, BS2861, BS3127, L7, L44, and Sc8B) of Xhv. Accessions showing overall high-level resistance to all tested Xhv isolates were 'Bunte Forellen', PI 226514, 'La Brillante', ARM09-161-10-1-4, 'Grenadier', 'Bella', PI 491210, 'Delight', and 'Romana Verde del Mercado'. Genome-wide association studies of BLS resistance by mixed linear model analyses identified significant QTLs on four lettuce chromosomes (2, 4, 6, and 8). The most significant QTL was on Chromosome 8 (P = 1.42 × 10-7), which explained 6.7% of total phenotypic variation for the disease severity. Accessions with a high level of resistance detected in this study are valuable resources for lettuce germplasm improvement. Molecular markers closely linked to QTLs can be considered for marker-assisted selection to develop new BLL lettuce cultivars with resistance to multiple races of Xhv.

Identification of genetic loci in lettuce mediating quantitative resistance to fungal pathogens

Key messageWe demonstrate genetic variation for quantitative resistance against important fungal pathogens in lettuce and its wild relatives, map loci conferring resistance and predict key molecular mechanisms using transcriptome profiling.Lactuca sativa L. (lettuce) is an important leafy vegetable crop grown and consumed globally. Chemicals are routinely used to control major pathogens, including the causal agents of grey mould (Botrytis cinerea) and lettuce drop (Sclerotinia sclerotiorum). With increasing prevalence of pathogen resistance to fungicides and environmental concerns, there is an urgent need to identify sources of genetic resistance to B. cinerea and S. sclerotiorum in lettuce. We demonstrated genetic variation for quantitative resistance to B. cinerea and S. sclerotiorum in a set of 97 diverse lettuce and wild relative accessions, and between the parents of lettuce mapping populations. Transcriptome profiling across multiple lettuce accessions enabled us to identify genes with expression correlated with resistance, predicting the importance of post-transcriptional gene regulation in the lettuce defence response. We identified five genetic loci influencing quantitative resistance in a F6 mapping population derived from a Lactuca serriola (wild relative) × lettuce cross, which each explained 5–10% of the variation. Differential gene expression analysis between the parent lines, and integration of data on correlation of gene expression and resistance in the diversity set, highlighted potential causal genes underlying the quantitative trait loci.

High Genetic Diversity of 16 Indian lettuce (Lactuca indica L.) Accessions from Vietnam.

&lt;b&gt;Background and Objective:&lt;/b&gt; Plant genetic resources provide the raw material for crop improvement and plant breeding program largely depends on it. Therefore, the evaluation of plant genetic resources plays a critical role in crop improvement and also in conserving valuable genetic resources for the future. In this study, the genetic diversity of 16 &lt;i&gt;Lactuca indica&lt;/i&gt; L. accessions collected in Vietnam was investigated by using ISSR and RAPD markers. &lt;b&gt;Materials and Methods:&lt;/b&gt; Genetic diversity of 16 &lt;i&gt;Lactuca sativa&lt;/i&gt; L. genotypes collected in Vietnam were evaluated using Random Amplified Polymorphic DNA (RAPD) and Inter-Simple Sequence Repeat (ISSR) molecular markers. &lt;b&gt;Results:&lt;/b&gt; In this study, 42 RAPD and ISSR primers were initially used, of which 12 and 9 primers, respectively were finally selected as they produced scorable patterns. RAPD markers produced a total of 113 loci, out of which 52 loci (45.96%) were polymorphic. The average percentage of the polymorphic band for RAPD primer is 45.96% and the genetic similarity based on simple matching coefficient ranged from 69.0-94.7%. ISSR analysis detected a total of 60 loci, out of which 22 loci (36.32%) were polymorphic and the genetic similarity ranged from 56.7-95.0%. In general, ISSR markers amplified fewer loci and showed lower variation in the percentage of polymorphism compares to the RAPD assay. &lt;b&gt;Conclusion:&lt;/b&gt; These results indicate that the 16 collected Indian lettuce genotypes are genetically diverse. Because of these genetic diversities, the collected genotypes could be used for preserving or crossing programs to improve this precious medicinal plant in Vietnam.

Examining phosphorus use efficiency across different lettuce (Lactuca sativa L.) accessions

Examining phosphorus use efficiency across different lettuce (Lactuca sativa L.) accessions

Accelerated Shelf-life Testing to Predict Quality Loss in Romaine-type Lettuce

The postharvest life of lettuce (Lactuca sativa) is variable and negatively affected by mechanical injury, incomplete cooling, and poor genetic quality. Lettuce breeders are developing cultivars with a longer shelf life and rely on subjective, destructive, and time-consuming methods for quality analysis. One method of accelerating quality evaluations is known as accelerated shelf-life testing (ASLT), which has the potential to assist breeders in assessing lettuce quality and shelf life. The objective of this research was to determine the quality traits that significantly affect shelf life to develop an ASLT procedure to rapidly assess the postharvest quality of lettuce accessions in breeding programs. In Test 1, Romaine lettuce quality was evaluated using one subjective and five objective parameters during storage at 5, 10, 15, or 20 °C. Results determined that weight loss, lightness*, and hue* angle were best correlated with the overall appearance rating, whereas storage at 10 or 15 °C differentiated the shelf-life potential quickly and without excessive deterioration. In Test 2, these objective characteristics and storage temperatures were used to study rates of quality deterioration of a commercial Romaine cultivar (Okeechobee) and a breeding line (60182), both with long shelf lives, and a Batavia lettuce cultivar (La Brillante) with a short shelf life. Lettuce was evaluated during storage at 10 °C (winter and spring seasons) or at 15 °C (winter season). Weight loss was the most appropriate quality index for lettuce at these storage temperatures for a single harvest, whereas lightness* and hue* angle were the most appropriate indices for comparing quality between harvests. To apply ASLT to postharvest assessments of lettuce, breeders and other researchers should include two controls with good and poor shelf life (similar to ‘Okeechobee’ and ‘La Brillante’, respectively) as standard baseline cultivars during storage at either 10 or 15 °C.

Comparative transcriptomics and metabolomics analyses provide insights into thermal resistance in lettuce (Lactuca sativa L.)

High temperature poses a major threat to sustainable development of the lettuce industry. Investigation of the mechanisms that regulate heat stress responses has great significance. Four lettuce accessions-two thermotolerant and two thermosensitive cultivars-were selected for comparative analysis. Subsequently, the metabolic changes in lettuce in response to heat treatment were investigated using untargeted metabolomic analysis. Several discriminatory metabolites were identified, including three amino acids, one carbohydrate, eight phenolic compounds, one terpene, one alcohol and one lignin. Transcriptomics analysis was performed in parallel using the same four lettuce accessions. The integrated analysis suggested that a large number of metabolites and genes detected with measurable changes during the heat response are involved in flavonoid biosynthesis. Additionally, 25 of the 31 transcription factors identified, including MYBs, WRKYs, NACs, bHLHs, MADSs, AP2/ERFs and bZIP, were also upregulated. Thus, this study provides a comprehensive understanding of the complex molecular mechanisms underlying the thermal stress responses of lettuce.

Population genetics and genome-wide association studies provide insights into the influence of selective breeding on genetic variation in lettuce.

Genetic diversity is an important resource in crop breeding to improve cultivars with desirable traits. Selective breeding can lead to a reduction of genetic diversity. However, our understanding on this subject remains limited in lettuce (Lactuca sativa L.). Genotyping-by-sequencing (GBS) can provide a reduced version of the genome as a cost-effective method to identify genetic variants across the genome. We genotyped a diverse set of 441 lettuce accessions using the GBS method. Phylogenetic and population genetic analyses indicated substantial genetic divergence among four horticultural types of lettuce: butterhead, crisphead, leaf, and romaine. Genetic-diversity estimates between and within the four types indicated that the crisphead type was the most differentiated from other types, whereas its population was the most homogenous with the slowest linkage disequilibrium (LD) decay among the four types. These results suggested that crisphead lettuces had relatively less genetic variation across the genome as well as low gene flow from other types. We identified putative selective sweep regions that showed low genetic variation in the crisphead type. Genome-wide association study (GWAS) and quantitative trait loci (QTL) analyses provided evidence that these genomic regions were, in part, associated with delayed bolting, implicating the positive selection of delayed bolting in reducing variation. Our findings enhance the current understanding of genetic diversity and the impacts of selective breeding on patterning genetic variation in lettuce.

Temporal expression profiles of defense-related genes involved in Lactuca sativa- Sclerotinia sclerotiorum interactions

Sclerotinia sclerotiorum, a destructive fungal pathogen with an extensive host range infecting more than 400 plant species, causes lettuce drop on the leafy green lettuce that potentially have an enormous economic impact on lettuce cultivation worldwide. To gain insights into how lettuce regulates its defense pathways, gene expression profiles of five defense-related genes (LsPRB1, LsSOD, LsERF1, LsLTC1, and LsHPL1) triggered following infection of susceptible Mazandaran line 1 (ML1) and tolerant Jahrom (Jah) lettuce accessions by the S. sclerotiorum were compared by the real-time quantitative RT-PCR (RT-qPCR) approach. In the current study, we observed temporal and quantitative gene expression fluctuations between two examined accessions of L. sativa in response to S. sclerotiorum attack. All genes, except LsHPL1, were up-regulated earlier (24 hours after inoculation) in the Jah accession compared with the susceptible one. This data implies strong defense responses established in the tolerant accession to arrest the fungal growth, but it resulted in restricting lesion development rather than in preventing infection. This research contributes to a better understanding of the kinetics of lettuce reactions induced following S. sclerotiorum infection and may be employed to develop effective strategies to manage lettuce drop.