Oligomer Length Research Articles

Random-Sequence DNA Oligomers Make Liquid Crystals: A Case of Collective Ordering in a Superdiverse Environment.

The availability of synthetic, analytical, and predictive tools makes DNA an ideal platform, not yet considered, to investigate statistical and soft matter physics. Here we report and interpret the equilibrium collective ordering in solutions of random-sequence DNA (rsDNA) oligomers of lengths L = 8 and L = 12. Despite the extreme molecular diversity inherent in rsDNA solutions, which for L = 12 are composed of 20 million distinct molecular species, these systems develop long-range columnar liquid crystal (LC) ordering when equilibrated at high osmotic pressure. By a combination of experimental models and computed statistics, we demonstrate that the residual end-to-end attraction between rsDNA duplexes, which typically terminate with various forms of pairing errors, is indeed sufficient to drive LC ordering. The resulting narrow range of isotropic-LC phase coexistence, in seeming contrast with the variety of phase behaviors of the species composing rsDNA, demonstrates that the (nearly) continuum distribution of molecular interaction strengths effectively reduces the tendency for demixing instead of enhancing it, in line with theoretical modeling.

Acceptor End‐functionalization of Naphthalenediimide Bithiophene Oligomers

AbstractOligomeric materials combine advantageous properties of both their small molecule and polymeric counterparts. Utilizing oligomers as non‐fullerene acceptors (NFAs) has been shown to be extremely useful for the development of organic solar cells with high efficiency, reproducible performance and long‐term stability. Here we report on two series of synthetically simple acceptor‐terminated oligomers A−T2‐(NDI−T2)n‐A with naphthalene diimide (NDI) and bithiophene (T2) cores up to the trimer (n =1,2,3). Termination of the oligomers is done using the strong acceptors (A) dicyanomethylene‐indanone (IC) and rhodanine (RD). Upon acceptor termination in the presence of piperidine (pip) as base, oligomers with pip‐substituted tricyclic end groups are obtained in high yield. We investigate the effect of oligomer length and acceptor end group on opto‐electronic properties and crystallinity. Both IC‐ and RD‐termination increase electron affinity compared to the parent, non‐functionalized cores. UV‐vis absorption in solution slightly redshifts as the chain length increases without showing a distinct aggregation. Asymmetric termination with hexylphenyl‐substituted indacenodithiophene (IDT) and IC is also possible. All symmetric oligomers show a strong tendency for crystallization, with the oligomer having the tricyclic end group exhibiting the highest melting enthalpy and temperature. The asymmetric IDT−T2‐NDI−T2‐IC oligomer is amorphous.

Development of machine learning algorithm for loop-mediated isothermal amplification including influence of temperature

To predict amplification in the Loop-Mediated Isothermal Amplification (LAMP) method, a binary model has been developed. This model assesses whether the combination of partial template binding facilitated by multiple primers aligns with a specific signature indicating amplification. For this model, 1512 settings were adjusted, encompassing variations in the extraction oligomer position from the primer, the oligomer length, the number of allowed mismatched bases, and the stringency of the homology position. The optimal set was determined based on the F1 value at a reaction temperature of 60°C, resulting in a value of 0.58. To implement machine learning by amalgamating multiple models, duplicate models were eliminated through cluster analysis. Machine learning using AutoML was performed on 108 distinct models. Consequently, the F1 values were 0.7119 at a reaction temperature of 60°C and 0.7210 at 68°C. The weak correlation between feature importance and the F1 value of the model alone suggests that machine learning utilizing this model incorporates numerous models to enhance prediction accuracy.

Bimodal substrate binding in the active site of the glycosidase BcX.

Bacillus circulans xylanase (BcX) from the glycoside hydrolase family 11 degrades xylan through a retaining, double-displacement mechanism. The enzyme is thought to hydrolyze glycosidic bonds in a processive manner and has a large, active site cleft, with six subsites allowing the binding of six xylose units. Such an active site architecture suggests that oligomeric xylose substrates can bind in multiple ways. In the crystal structure of the catalytically inactive variant BcX E78Q, the substrate xylotriose is observed in the active site, as well as bound to the known secondary binding site and a third site on the protein surface. Nuclear magnetic resonance (NMR) titrations with xylose oligomers of different lengths yield nonlinear chemical shift trajectories for active site nuclei resonances, indicative of multiple binding orientations for these substrates for which binding and dissociation are in fast exchange on the NMR timescale, exchanging on the micro- to millisecond timescale. Active site binding can be modeled with a 2 : 1 model with dissociation constants in the low and high millimolar range. Extensive mutagenesis of active site residues indicates that tight binding occurs in the glycon binding site and is stabilized by Trp9 and the thumb region. Mutations F125A and W71A lead to large structural rearrangements. Binding at the glycon site is sensed throughout the active site, whereas the weak binding mostly affects the aglycon site. The interactions with the two active site locations are largely independent of each other and of binding at the secondary binding site.

From π-Conjugated Rods to Shape-Persistent Rings, Wheels, and Ladders: The Question of Rigidity.

ConspectusRigid-rod oligomers and polymers are mostly based on (hetero)aromatic rings connected with each other, either directly or via ethynylene or butadiynylene linkers, or by a combination of both structural elements. Although they are much more rigid than vinyl polymers, they exhibit considerable structural flexibility, often more than would be expected merely from their chemical structure. This disparity holds for both linear as well as for cyclic structures. The flexibility of rigid-rod polymers, which is directly observable for defined oligomers of different lengths at the solid-liquid interface by means of scanning-tunneling microscopy, also impacts their optical and electronic properties. The flexibility can be used, for example, to control whether an oligomer with two different fluorescent end-groups emits from either the one or the other. The flexibility of shape-persistent macrocycles also has an impact on the overall thermal stability of mechanically interlocked molecular architectures. However, the degree of flexibility can be reduced when rigid struts are covalently mounted into the inside of the rings, leading to the formation of so-called molecular spoked wheels. The combination of these two elements─rings and rods─stiffens both of them: the ring perimeter is prevented from collapsing and the internal rods from bending. These compounds have been further developed as platform molecules, where three spokes stiffen the ring and together form a tripod-like platform, while a fourth arm points─after adsorption to a solid substrate─above the plane of the molecule. This pillar makes it possible to decouple a functional group at the end of the arm from the surface. Rigidity enhancement by the introduction of rigid spacer elements can also be applied to the case of rigid-rod polymers and is visualized by sophisticated molecular dynamics simulations. In this case, formation of single-stranded oligomers and polymers, and a subsequent zipping reaction to form ladder-like structures, directly allows, by means of single-molecule fluorescence spectroscopy, a comparison of the single- and double-stranded molecules. In particular in the case of the polymers, which can be up to 100 nm in length, the enhancement of rigidity is quite remarkable. Overall, the covalent connection of two or more rigid molecular entities has a self-reinforcing effect: all parts of the molecule gain rigidity. Since overall synthetic yields for such complex high-molecular weight covalently bound shape-persistent structures can still be low, scanning tunneling microscopy and single-molecule fluorescence spectroscopy are the methods of choice for structural analyses. Preliminary results illustrate how these compounds can serve as versatile sources of deterministic single photons on demand, since rigidity also enhances the intramolecular flow of excitation energy, and suggest a range of applications in optoelectronic devices.

An Electronic Structure Investigation of PEDOT with AlCl4- Anions-A Promising Redox Combination for Energy Storage Applications.

In this work, we use density functional theory to investigate the electronic structure of poly(3,4-ethylenedioxythiophene) (PEDOT) oligomers with co-located AlCl4- anions, a promising combination for energy storage. The 1980s bipolaron model remains the dominant interpretation of the electronic structure of PEDOT despite recent theoretical progress that has provided new definitions of bipolarons and polarons. By considering the influence of oligomer length, oxidation or anion concentration and spin state, we find no evidence for many of the assertions of the 1980s bipolaron model and so further contribute to a new understanding. No self-localisation of positive charges in PEDOT is found, as predicted by the bipolaron model at the hybrid functional level. Instead, our results show distortions that exhibit a single or a double peak in bond length alternations and charge density. Either can occur at different oxidation or anion concentrations. Rather than representing bipolarons or polaron pairs in the original model, these are electron distributions driven by a range of factors. Distortions can span an arbitrary number of nearby anions. We also contribute a novel conductivity hypothesis. Conductivity in conducting polymers has been observed to reduce at anion concentrations above 0.5. We show that at high anion concentrations, the energy of the localised, non-bonding anionic orbitals approaches that of the system HOMO due to Coulombic repulsion between anions. We hypothesize that with nucleic motion in the macropolymer, these orbitals will interfere with the hopping of charge carriers between sites of similar energy, lowering conductivity.

Effect of polymer concentration and cross-linking density on the microstructure and properties of polyimide aerogels

Polyimide aerogels display excellent mechanical strength, high thermal stability, low thermal conductivity, and outstanding dielectric properties. Typically, the synthesis of polyimide aerogels involves the polycondensation of dianhydride and diamine into poly(amic acid) (PAA) oligomers, which are then cross-linked and chemically imidized into polyimide. The stoichiometry of dianhydride and diamine determines the number of repeat units and length of the PAA oligomers, which in turn determines the cross-linking density. Despite the critical role of polymer concentration and number of repeating units in determining the microstructure and properties of polyimide aerogels, few detailed studies exist on these two parameters. Here, we synthesized and characterized 16 polyimide aerogel formulations from the common monomers biphenyl-3,3′,4,4′-tetracarboxylic dianhydride (BPDA) and 4,4′-oxydianiline (ODA), with different repeat units (n = 5, 15, 30, 45) and total polymer concentrations (4, 7, 10, 13 wt%). An increased polymer concentration accelerated gelation and enhanced the mechanical performance of aerogels, but surprisingly, it also led to higher volumetric shrinkage during aging, solvent exchange, and supercritical drying (SCD). Specific surface areas (SSAs) reached a maximum at intermediate polymer concentrations. A shorter oligomer chain length, i.e., a higher cross-linking density, led to moderately higher SSAs (between 320 and 400 m2/g) and reduced shrinkage, resulting in lower densities for a given polymer concentration. The density dependence of the thermal conductivity exhibits a pronounced U-shaped curve with a minimum in thermal conductivity of 21–23 mW/(m·K) between 0.080 and 0.120 g/cm3, with somewhat lower values for more highly cross-linked aerogels. This systematic study of polyimide aerogels forms the basis for designing polyimide aerogels with tailored properties for targeted applications.Graphical

Structural basis for the minimal bifunctional alginate epimerase AlgE3 from Azotobacter chroococcum.

Among the epimerases specific to alginate, some of them in Azotobacter genera convert β-d-mannuronic acid to α-l-guluronic acid but also have lyase activity to degrade alginate. The remarkable characteristics of these epimerases make it a promising enzyme for tailoring alginates to meet specific demands. Here, we determined the structure of the bifunctional mannuronan C-5 epimerase AlgE3 from Azotobacter chroococcum (AcAlgE3) in complex with several mannuronic acid oligomers as well as in apo form, which allowed us to elucidate the binding manner of each mannuronic acid oligomer, and the structural plasticity, which is dependent on calcium ions. Moreover, a comprehensive analysis of the lyase activity profiles of AcAlgE3 combined with structural characteristics explained the preference for different chain length oligomers.

Pre-Polymer Chain Length: Influence on Permanent Memory Effect of PDLC Devices

This study delved into the correlation between the chain length of PEG polymerizable oligomers and the electro-optical properties exhibited by the resultant PDLC films. A range of di(meth)acrylate oligomers derived from polyethylene glycol with varying molecular weights (Mn = 1000, 2000, 4000, and 6000 g mol−1) was synthesized for incorporation as the polymer matrix in PDLC devices. Comprehensive analyses employing 1H-NMR, 13C-NMR, and MALDI-TOF mass spectroscopy were conducted to validate the structure and purity of the synthesized products. The investigation revealed a significant influence of pre-polymer molecular chain length on the thermal properties of the polymer, including amorphousness and crystallinity, which in turn impact the permanent memory effect. Specifically, it was observed that amorphous PEG polymers serve as an ideal matrix for fostering the permanent memory effect in PDLCs. Among the polymerizable PEG oligomers examined, those with a molecular weight of 1000 g/mol yielded polymer chains existing in an amorphous state, exhibiting a glass transition temperature lower than room temperature (−50 °C). This characteristic imparts flexibility and mobility to the polymer matrix chains, facilitating a 37% permanent memory effect. Conversely, longer polymer chains lead to the formation of crystal aggregates, resulting in semi-crystalline polymer matrices. This reduces the malleability of the polymer chains, thereby nullifying the permanent memory effect in the corresponding PDLC devices.

Illumina reads correction: evaluation and improvements

The paper focuses on the correction of Illumina WGS sequencing reads. We provide an extensive evaluation of the existing correctors. To this end, we measure an impact of the correction on variant calling (VC) as well as de novo assembly. It shows, that in selected cases read correction improves the VC results quality. We also examine the algorithms behaviour in a processing of Illumina NovaSeq reads, with different reads quality characteristics than in older sequencers. We show that most of the algorithms are ready to cope with such reads. Finally, we introduce a new version of RECKONER, our read corrector, by optimizing it and equipping with a new correction strategy. Currently, RECKONER allows to correct high-coverage human reads in less than 2.5 h, is able to cope with two types of reads errors: indels and substitutions, and utilizes a new, based on a two lengths of oligomers, correction verification technique.

How Permanent Are the Permanent Macrodipoles of Anthranilamide Bioinspired Molecular Electrets?

Dipoles are ubiquitous, and their impacts on materials and interfaces affect many aspects of daily life. Despite their importance, dipoles remain underutilized, often because of insufficient knowledge about the structures producing them. As electrostatic analogues of magnets, electrets possess ordered electric dipoles. Here, we characterize the structural dynamics of bioinspired electret oligomers based on anthranilamide motifs. We report dynamics simulations, employing a force field that allows dynamic polarization, in a variety of solvents. The results show a linear increase in macrodipoles with oligomer length that strongly depends on solvent polarity and hydrogen-bonding (HB) propensity, as well as on the anthranilamide side chains. An increase in solvent polarity increases the dipole moments of the electret structures while decreasing the dipole effects on the moieties outside the solvation cavities. The former is due to enhancement of the Onsager reaction field and the latter to screening of the dipole-generated fields. Solvent dynamics hugely contributes to the fluctuations and magnitude of the electret dipoles. HB with the solvent weakens electret macrodipoles without breaking the intramolecular HB that maintains their extended conformation. This study provides design principles for developing a new class of organic materials with controllable electronic properties. An animated version of the TOC graphic showing a sequence of the MD trajectories of short and long molecular electrets in three solvents with different polarities is available in the HTML version of this paper.

Solvent quality and nonbiological oligomer folding: revisiting conventional paradigms.

We report on extensive molecular dynamics atomistic simulations of a meta-substituted poly-phenylacetylene (pPA) foldamer dispersed in three solvents, water H2O, cyclohexane cC6H12, and n-hexane nC6H14, and for three oligomer lengths 12mer, 16mer and 20mer. At room temperature, we find a tendency of the pPA foldamer to collapse into a helical structure in all three solvents but with rather different stability character, stable in water, marginally stable in n-hexane, unstable in cyclohexane. In the case of water, the initial and final number of hydrogen bonds of the foldamer with water molecules is found to be unchanged, with no formation of intrachain hydrogen bonding, thus indicating that hydrogen bonding plays no role in the folding process. In all three solvents, the folding is found to be mainly driven by electrostatics, nearly identical in the three cases, and largely dominant compared to van der Waals interactions that are different in the three cases. This scenario is also supported by the analysis of distribution of the bond and dihedral angles and by a direct calculation of the solvation and transfer free energies via thermodynamic integration. The different stability in the case of cyclohexane and n-hexane notwithstanding their rather similar chemical composition can be traced back to the different entropy-enthalpy compensation that is found similar for water and n-hexane, and very different for cyclohexane. A comparison with the same properties for poly-phenylalanine oligomers underscores the crucial differences between pPA and peptides. To highlight how these findings can hardly be interpreted in terms of a simple "good" and "poor" solvent picture, a molecular dynamics study of a bead-spring polymer chain in a Lennard-Jones fluid is also included.

Mapping the Morphology of DNA on Carbon Nanotubes in Solution Using X-ray Scattering Interferometry.

Single-walled carbon nanotubes (SWCNTs) with adsorbed single-stranded DNA (ssDNA) are applied as sensors to investigate biological systems, with potential applications ranging from clinical diagnostics to agricultural biotechnology. Unique ssDNA sequences render SWCNTs selectively responsive to target analytes such as (GT)n-SWCNTs recognizing the neuromodulator, dopamine. It remains unclear how the ssDNA conformation on the SWCNT surface contributes to functionality, as observations have been limited to computational models or experiments under dehydrated conditions that differ substantially from the aqueous biological environments in which the nanosensors are applied. We demonstrate a direct mode of measuring in-solution ssDNA geometries on SWCNTs via X-ray scattering interferometry (XSI), which leverages the interference pattern produced by AuNP tags conjugated to ssDNA on the SWCNT surface. We employ XSI to quantify distinct surface-adsorbed morphologies for two (GT)n ssDNA oligomer lengths (n = 6, 15) that are used on SWCNTs in the context of dopamine sensing and measure the ssDNA conformational changes as a function of ionic strength and during dopamine interaction. We show that the shorter oligomer, (GT)6, adopts a more periodically ordered ring structure along the SWCNT axis (inter-ssDNA distance of 8.6 ± 0.3 nm), compared to the longer (GT)15 oligomer (most probable 5'-to-5' distance of 14.3 ± 1.1 nm). During molecular recognition, XSI reveals that dopamine elicits simultaneous axial elongation and radial constriction of adsorbed ssDNA on the SWCNT surface. Our approach using XSI to probe solution-phase morphologies of polymer-functionalized SWCNTs can be applied to yield insights into sensing mechanisms and inform future design strategies for nanoparticle-based sensors.

Fine-tuned molecular design toward a stable solid electrolyte interphase on a lithium metal anode from in silico simulation

Electrolyte engineering has emerged as a promising approach for enhancing the performance of lithium (Li) metal batteries, with recent advancements in novel electrolytes contributing to improved battery performance. Nevertheless, the intricate electrochemical interface poses significant challenges for experimental studies, resulting in a limited fundamental understanding of interface phenomena. To address this issue, we utilize hybrid ab initio and reactive molecular dynamics (HAIR) simulations to examine the solid electrolyte interphase (SEI) formation process and chemical composition at the atomic level in a series of fluorinated pseudo-localized high-concentration electrolytes (LHCEs). Our detailed analysis uncovers that ionic conductivity, the abundance of LiF, and oligomer length are three pivotal factors influencing cell performance. The simulations not only corroborate the –CF2- fluorinated backbone scheme, aligning with experimental findings but also reveal new opportunities for enhancing performance through the introduction of –CHF– moieties based on the concept of incremental design. Consequently, we propose a novel solvent molecule, fluorinated 1,2,3,4,5,6-hexa-1,6-dimethoxylhexane (FHDH), and demonstrate that FHDH maintains desirable physicochemical properties and high F concentration while exhibiting superior SEI physicochemical properties in terms of ionic conductivity, relative amount of LiF, and long-chain oligomers. Our findings offer a rational explanation for experimental design strategies and suggest further electrolyte optimization based on these insights, paving the way for the development of high-performance Li metal batteries.

Mineral-Mediated Oligoribonucleotide Condensation: Broadening the Scope of Prebiotic Possibilities on the Early Earth.

The origin of life on earth requires the synthesis of protobiopolymers in realistic geologic environments along strictly abiotic pathways that rely on inorganic phases (such as minerals) instead of cellular machinery to promote condensation. One such class of polymer central to biochemistry is the polynucleotides, and oligomerization of activated ribonucleotides has been widely studied. Nonetheless, the range of laboratory conditions tested to date is limited and the impact of realistic early Earth conditions on condensation reactions remains unexplored. Here, we investigate the potential for a variety of minerals to enhance oligomerization using ribonucleotide monomers as one example to model condensation under plausible planetary conditions. The results show that several minerals differing in both structure and composition enhance oligomerization. Sulfide minerals yielded oligomers of comparable lengths to those formed in the presence of clays, with galena being the most effective, yielding oligonucleotides up to six bases long. Montmorillonite continues to excel beyond other clays. Chemical pretreatment of the clay was not required, though maximum oligomer lengths decreased from ~11 to 6 bases. These results demonstrate the diversity of mineral phases that can impact condensation reactions and highlight the need for greater consideration of environmental context when assessing prebiotic synthesis and the origin of life.

Kinetics of Single-Wall Carbon Nanotube Coating Displacement by Single-Stranded DNA Depends on Nanotube Structure.

Time-resolved fluorescence spectroscopy has been used to study the displacement of adsorbed sodium dodecyl sulfate (SDS) from the surface of single-wall carbon nanotubes (SWCNTs) by short strands of single-stranded DNA. Intensity changes in near-infrared emission peaks of various SWCNT structures were analyzed following the addition of six different (GT)n oligomers (n from 3 to 20) to SDS-coated nanotube samples. There is a strong kinetic dependence on the oligomer length, with (GT)3 giving an initial rate more than 300 times greater than that of (GT)20. For shorter oligos in the (GT)n series, we observe an inverse dependence of the displacement rate on the SWCNT diameter, with SDS displaced from (6,5) more than twice as fast as from (8,7). However, this diameter dependence is reversed for oligos with more than six (GT) units. There is also a systematic dependence of the displacement rate on the nanotube chiral angle that is strongest for (GT)5, leading to a factor of ∼3 initial rate difference between (9,1) and (6,5) despite their identical diameters. To account for these findings, we propose a simple two-step kinetic model in which disruption of the original SDS coating is followed by conformational relaxation of ssDNA on the nanotube surface. The relaxation is relatively fast for ssDNA oligos shorter than 12 bp, making the first step rate-determining. Conversely, relaxation of the longer oligomers is slow enough that the second step becomes rate-determining.

Controlling the positive ion electrospray ionization of poly(ethylene glycols) when using ultra-high-performance supercritical fluid chromatography-mass spectrometry.

Poly(ethylene glycols) are complex polymers often added to pharmaceutical formulations to improve drug solubility and delivery. One of the main challenges when using chromatographic techniques coupled to mass spectrometry is the unselective ionization of poly(ethylene glycols) oligomers. Additionally, when the chain length is large enough, multiple charged species are formed, further complicating the mass spectra and processing. This study uses the advanced oligomer separation provided by supercritical fluid chromatography with a mass spectrometry approach that selectively ionizes poly(ethylene glycols) as ammoniated molecules to simplify data analysis and facilitate batch-to-batch comparisons. Several visual representations of the response of the ionization events based on the polymer molecular weight and the repeating unit were used to elucidate trends in ionization. Evaluation of the influence of the oligomer length and end-group on the electrospray ionization of the polymer allowed the development of a process to enable selective ionization for these complex polymers.

On-Demand Degradation of Thioester/Thioketal Functions in Vinyl Pivalate-Derived Copolymers with Thionolactones

Copolymers containing thioester and thioketal groups were obtained by copolymerization of five- to seven-membered ring thionolactones (TLs) with vinyl pivalate (VP). With the help of a degradation study on thioester and thioketal model compounds, we report the orthogonal reactivity of such incorporated links with thioesters being selectively cleaved by aminolysis and thioketals by peroxides. Orthogonal stepwise degradation of poly(TL-co-VP) copolymers was achieved using isopropylamine and benzoyl peroxide as shown by SEC. Bleach was identified as a universal agent for accelerated degradation. A good correlation between oligomer length after degradation and estimated polymer mass loss is also reported.

Exploring Bethe-Salpeter Excited-State Dipoles: The Challenging Case of Increasingly Long Push-Pull Oligomers.

The change of molecular dipole moment induced by photon absorption is key to interpret the measured optical spectra. Except for compact molecules, time-dependent density functional theory (TD-DFT) remains the only theory allowing to quickly predict excited-state dipoles (μES), albeit with a strong dependency on the selected exchange-correlation functional. This Letter presents the first assessment of the performances of the many-body Green's function Bethe-Salpeter equation (BSE) formalism for the evaluation of the μES. We explore increasingly long push-pull oligomers as they present an excited-state nature evolving with system size. This work shows that BSE's μES do present the same evolution with oligomeric length as their CC2 and CCSD counterparts, with a dependency on the starting exchange-correlation functional that is strongly decreased as compared to TD-DFT. This Letter demonstrates that BSE is a valuable alternative to TD-DFT for properties related to the excited-state density and not only for transition energies and oscillator strengths.

Substituted Oligosaccharides as Protein Mimics: Deep Learning Free Energy Landscapes.

Protein-protein complexes power the majority of cellular processes. Interfering with the formation of such complexes using well-designed mimics is a difficult, yet actively pursued, research endeavor. Due to the limited availability of results on the conformational preferences of oligosaccharides compared to polypeptides, the former have been much less explored than the latter as protein mimics, despite interesting ADMET characteristics. In this work, the conformational landscapes of a series of 956 substituted glucopyranose oligomers of lengths 3 to 12 designed as protein interface mimics are revealed using microsecond-time-scale, enhanced-sampling molecular dynamics simulations. Deep convolutional networks are trained on these large conformational ensembles, to predict the stability of longer oligosaccharide structures from those of their constituent trimer motifs. Deep generative adversarial networks are then designed to suggest plausible conformations for oligosaccharide mimics of arbitrary length and substituent sequences that can subsequently be used as input to docking simulations. Analyzing the performance of the neural networks also yields insights into the intricate collective effects that dominate oligosaccharide conformational dynamics.