Leaf Rust Resistance Genes Lr13 Research Articles

Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning

The cloning of agronomically important genes from large, complex crop genomes remains challenging. Here we generate a 14.7 gigabase chromosome-scale assembly of the South African bread wheat (Triticum aestivum) cultivar Kariega by combining high-fidelity long reads, optical mapping and chromosome conformation capture. The resulting assembly is an order of magnitude more contiguous than previous wheat assemblies. Kariega shows durable resistance to the devastating fungal stripe rust disease1. We identified the race-specific disease resistance gene Yr27, which encodes an intracellular immune receptor, to be a major contributor to this resistance. Yr27 is allelic to the leaf rust resistance gene Lr13; the Yr27 and Lr13 proteins show 97% sequence identity2,3. Our results demonstrate the feasibility of generating chromosome-scale wheat assemblies to clone genes, and exemplify that highly similar alleles of a single-copy gene can confer resistance to different pathogens, which might provide a basis for engineering Yr27 alleles with multiple recognition specificities in the future.

Wheat leaf rust resistance gene Lr13 is a specific Ne2 allele for hybrid necrosis

Wheat leaf rust resistance gene Lr13 is a specific Ne2 allele for hybrid necrosis

High-temperature wheat leaf rust resistance gene Lr13 exhibits pleiotropic effects on hybrid necrosis

High-temperature wheat leaf rust resistance gene Lr13 exhibits pleiotropic effects on hybrid necrosis

The relationship of leaf rust resistance gene Lr13 and hybrid necrosis gene Ne2m on wheat chromosome 2BS.

Genetic and mutational analyses of wheat leaf rust resistance gene Lr13 and hybrid necrosis gene Ne2 m indicated that they are the same gene. Hybrid necrosis in wheat characterized by chlorosis and eventual necrosis of plant tissues in certain wheat hybrids is controlled by the interaction of complementary dominant genes Ne1 and Ne2 located on chromosome arms 5BL and 2BS, respectively. Multiple alleles at each locus can be identified by differences in necrotic phenotypes when varieties are crossed with a fixed accession of the other genotype. Some of at least five Ne2 alleles were described as s (strong), m (medium) and w (weak); alleles of Ne1 were similarly described. Ne2m causes moderate necrosis in hybrids with genotypes having Ne1s. Ne2 is located on chromosome arm 2BS in close proximity to Lr13. Most wheat lines with Ne2m carry Lr13, and all wheat lines with Lr13 appear to carry Ne2m. To further dissect the relationship between Lr13 and Ne2m, more than 350 crosses were made between cv. Spica (Triticum aestivum) or Kubanka (T. durum) carrying Ne1s and recombinant inbred lines or doubled haploid lines from three crosses segregating for Lr13. F1 plants from lines carrying Lr13 crossed with Spica (Ne1s) always showed progressive necrosis; those lacking Lr13 did not. Four wheat cultivars/lines carrying Lr13 were treated with the mutagen EMS. Thirty-five susceptible mutants were identified; eight were distinctly less glaucous and late maturing indicative of chromosome 2B or sub-chromosome loss. Hybrids of phenotypically normal Lr13 mutant plants crossed with Spica did not produce symptoms of hybrid necrosis. Thus, Lr13 and one particular Ne2m allele may be the same gene.

A PRELIMINARY STUDY FOR IDENTIFICATION OF CANDIDATE AFLP MARKERS FOR LEAF RUST RESISTANCE GENE LR13 BY USING NEAR- ISOGENIC LINES OF SPRING WHEAT CV. THATCHER

The aim of the present study was to detect candidate DNA markers for leaf rust resistance gene Lr13. The NIL groups were constructed from a set of near isogenic lines of wheat cv. Thatcher containing in total 41 different Lr resistance genes. A total number of 246 primer combinations in the NIL groups were screened for DNA polymorphism by using the AFLP method. Twenty-eight AFLP primer combinations yielded 33 polymorphic bands in Tc+Lr13 line. To confirm these polymorphic bands, 28 primer combinations were investigated in 41 Thatcher near isogenic lines. Six primer combinations amplified specific band products in Tc+Lr13. It was concluded that these AFLP markers can be linked to Lr13 gene and in further studies on Lr13 resistance gene, these six AFLP markers should be analyzed in near isogenic lines. Also, construction of the NIL groups can be useful in terms of time and cost of the molecular researches including Thatcher near isogenic lines.

Genetic mapping of adult plant leaf rust resistance genes Lr48 and Lr49 in common wheat

Hypersensitive adult plant resistance genes Lr48 and Lr49 were named based on their genetic independence of the known adult plant resistance genes. This study was planned to determine genomic locations of these genes. Recombinant inbred line populations derived from crosses involving CSP44 and VL404, sources of Lr48 and Lr49, respectively, and the susceptible parent WL711, were used to determine the genomic locations of these genes. Bulked segregant analyses were performed using multiplex-ready PCR technology. Lr48 in genotype CSP44 was mapped on chromosome arm 2BS flanked by marker loci Xgwm429b (6.1 cM) and Xbarc7 (7.3 cM) distally and proximally, respectively. Leaf rust resistance gene Lr13, carried by the alternate parent WL711, was proximal to Lr48 and was flanked by Xksm58 (5.1 cM) and Xstm773-2 (8.7 cM). Lr49 was flanked by Xbarc163 (8.1 cM) and Xwmc349 (10.1 cM) on chromosome arm 4BL. The likely presence of the durable leaf rust resistance gene Lr34 in both CSP44 and VL404 was confirmed using the tightly linked marker csLV34. Near-isogenic lines for Lr48 and Lr49 were developed in cultivar Lal Bahadur. Genotypes combining Lr13 and/or Lr34 with Lr48 or Lr49 were identified as potential donor sources for cultivar development programs.

Virulence in Puccinia recondita f. sp. tritici Isolates from Canada to Genes for Adult-Plant Resistance to Wheat Leaf Rust.

Sixty-seven isolates of Puccinia recondita f. sp. tritici collected in Canada were tested for virulence to adult plants of Thatcher near-isogenic wheat lines with leaf rust resistance genes Lr13, Lr22a, Lr34, Lr35, and Lr13 and Lr34 combined. All of the isolates had low infection type to the Thatcher lines with Lr22a and Lr35. All isolates had lower infection type and lower rust severity on the Thatcher line with Lr34 compared with Thatcher. The isolates were polymorphic for virulence to the Thatcher line with Lr13; many isolates were completely virulent to this line, and other isolates produced very low or intermediate avirulent infection type. On the Thatcher line with Lr13 and Lr34 combined, many isolates had infection type and rust severity similar to the Thatcher line with Lr34, while other isolates had lower infection type and rust severity compared with the single-gene lines with Lr13 or Lr34. Fifteen isolates with low, intermediate, and high infection type to adult plants with Lr13 were tested for infection type on seedling plants of the Thatcher lines with resistance genes Lr13, Lr22a, Lr34, Lr35, and Lr37, and on Thatcher lines with Lr13 paired with seedling resistance genes. Most isolates were completely virulent to seedling plants with Lr13 and Lr22a. Plants with Lr37 expressed seedling resistance to all isolates tested. Seedling plants with Lr34 had lower infection types to all isolates compared with Thatcher. Seedlings with Lr35 had high infection types to most isolates, with varying amounts of chlorosis. The Thatcher lines with Lr13 plus seedling resistance genes were most resistant to the isolates that had very low infection types on adult plants with Lr13 and intermediate infection types on plants with seedling resistance genes. Genes Lr22a, Lr35, and Lr37 offer additional sources of highly effective leaf rust resistance in wheat.

Enhanced leaf rust resistance in wheat conditioned by resistance gene pairs with Lr13

Leaf rust resistance gene Lr13 is present in many North American hard red spring wheat cultivars that have shown durable resistance to leaf rust. Fifteen pair-wise combinations of Lr13 and seedling leaf rust resistance genes were developed by intercrossing near isogenic Thatcher lines. In both seedling and adult plant tests, homozygous paired combinations of specific resistance genes with Lr13 had enhanced resistance relative to either parent to rust isolates that had intermediate avirulent infection types to the additional genes. In field tests, homozygous lines were more resistant than either parent if the additional leaf rust gene conditioned an effective level of resistance when present singly.

Detecting Wheat Leaf Rust Resistance GeneLr13 in Seedlings

Detecting Wheat Leaf Rust Resistance Gene<i>Lr</i>13 in Seedlings

Detecting Wheat Leaf Rust Resistance GeneLr13 in Seedlings

Detecting Wheat Leaf Rust Resistance Gene<i>Lr</i>13 in Seedlings