LEA Genes Research Articles

Identification of Picea mongolica LEA Gene Family Implicates PmLEA25 in Drought Resistance

Picea mongolica is a rare and valuable tree species in China, having high tolerance for drought, cold, and sand burial. The late embryogenesis abundant protein (LEA protein) is a crucial transcription factor that plays a key role in both plant embryonic development and stress response. LEA genes have, however, not yet been reported in P. mongolica. In this study, through the analysis of genome data from Picea abies and transcriptome data from P. mongolica, a total of 49 PmLEAs were discovered and categorized into eight subfamilies based on their Pfam domain and phylogenetic relationship. RNA-Seq research revealed that 37 PmLEAs were differentially expressed at various stages of embryonic development. Using qRT-PCR, we found that most PmLEAs responded strongly to drought stress, with genes in the same subfamily exhibiting identical expression patterns. In particular, PmLEA25 is the most highly induced by drought treatment. Furthermore, we heterologously transformed PmLEA25 into Arabidopsis. The overexpression of PmLEA25 remarkably increased the germination rate, root length, and antioxidant capacity in Arabidopsis under drought treatment, compared with WT. The results serve as a point of reference for gaining a deeper comprehension of the function of PmLEA25 in the molecular process of stress resistance in P. mongolica. Additionally, they offer significant genetic materials for the purpose of breeding stress-resistant spruce species.

An Overview of LEA Genes and Their Importance in Combating Abiotic Stress in Rice

An Overview of LEA Genes and Their Importance in Combating Abiotic Stress in Rice

A Physiological and Molecular Focus on the Resistance of "Filippo Ceo" Almond Tree to Xylella fastidiosa.

The impact of Xylella fastidiosa (Xf) subsp. pauca on the environment and economy of Southern Italy has been devastating. To restore the landscape and support the local economy, introducing new crops is crucial for restoring destroyed olive groves, and the almond tree (Prunus dulcis Mill. D. A. Webb) could be a promising candidate. This work focused on the resistance of the cultivar "Filippo Ceo" to Xf and evaluated its physiological and molecular responses to individual stresses (drought or pathogen stress) and combined stress factors under field conditions over three seasons. Filippo Ceo showed a low pathogen concentration (≈103 CFU mL-1) and a lack of almond leaf scorch symptoms. Physiologically, an excellent plant water status was observed (RWC 82-89%) regardless of the stress conditions, which was associated with an increased proline content compared to that of the control plants, particularly in response to Xf stress (≈8-fold). The plant's response did not lead to a gene modulation that was specific to different stress factors but seemed more indistinct: upregulation of the LEA and DHN gene transcripts by Xf was observed, while the PR transcript was upregulated by drought stress. In addition, the genes encoding the transcription factors (TFs) were differentially induced by stress conditions. Filippo Ceo could be an excellent cultivar for coexistence with Xf subps. pauca, confirming its resistance to both water stress and the pathogen, although this similar health status was achieved differently due to transcriptional reprogramming that results in the modulation of genes directly or indirectly involved in defence strategies.

Alleviation of Adverse Effects of Drought Stress on Growth and Nitrogen Metabolism in Mungbean (Vigna radiata) by Sulphur and Nitric Oxide Involves Up-Regulation of Antioxidant and Osmolyte Metabolism and Gene Expression.

The influence of drought induced by polyethylene glycol (PEG) and the alleviatory effect of nitric oxide (50 µM) and sulphur (S, 1 mM K2SO4) were studied in Vigna radiata. Drought stress reduced plant height, dry weight, total chlorophylls, carotenoids and the content of nitrogen, phosphorous, potassium and sulphur. The foliar applications of NO and sulphur each individually alleviated the decline, with a greater alleviation observed in seedlings treated with both NO and sulphur. The reduction in intermediates of chlorophyll synthesis pathways and photosynthesis were alleviated by NO and sulphur. Oxidative stress was evident through the increased hydrogen peroxide, superoxide and activity of lipoxygenase and protease which were significantly assuaged by NO, sulphur and NO + sulphur treatments. A reduction in the activity of nitrate reductase, glutamine synthetase and glutamate synthase was mitigated due to the application of NO and the supplementation of sulphur. The endogenous concentration of NO and hydrogen sulphide (HS) was increased due to PEG; however, the PEG-induced increase in NO and HS was lowered due to NO and sulphur. Furthermore, NO and sulphur treatments to PEG-stressed seedlings further enhanced the functioning of the antioxidant system, osmolytes and secondary metabolite accumulation. Activities of γ-glutamyl kinase and phenylalanine ammonia lyase were up-regulated due to NO and S treatments. The treatment of NO and S regulated the expression of the Cu/ZnSOD, POD, CAT, RLP, HSP70 and LEA genes significantly under normal and drought stress. The present study advocates for the beneficial use of NO and sulphur in the mitigation of drought-induced alterations in the metabolism of Vigna radiata.

Conventional and molecular breeding strategies for improvement of drought tolerance cultivars in rice: Recent approaches and outlooks

Rice is a vital staple food, especially in Asia, but it is highly susceptible to drought, leading to significant yield losses. To ensure food sustainability, drought-tolerant rice varieties are essential. Conventional breeding methods improve drought tolerance by focusing on biometric traits like root depth, avoidance, escape, and tolerance. This involves screening and crossing drought-tolerant varieties with high-yielding ones, followed by selection and evaluation. Techniques such as pedigree selection, recurrent selection, and backcrossing introduce desirable genes to enhance drought tolerance. Induced mutation through radiation exposure is also used. The molecular basis of drought tolerance involves identifying and manipulating genes responsible for rice's response to water stress. Techniques like QTL analysis, transcriptomics, genomics, and proteomics identify genes and QTLs associated with drought tolerance. Important genes involved in drought response include DREB, LEA, and ROS scavenging genes. Identifying QTLs enables the development of molecular markers for efficient screening of drought-tolerant rice genotypes. In conclusion, conventional breeding and molecular approaches are employed to develop drought-tolerant rice varieties. Conventional breeding improves biometric traits, while molecular techniques identify and manipulate specific genes associated with drought tolerance. This combination holds promise for high-yielding and drought-tolerant rice cultivars, contributing to global food security. However, further research is needed to understand the complex genetic mechanisms underlying drought tolerance in rice and enhance breeding precision and efficiency.

Genome-wide identification and characterization of members of the LEA gene family in Panax notoginseng and their transcriptional responses to dehydration of recalcitrant seeds

BackgroundLate embryogenesis abundant (LEA) proteins play an important role in dehydration process of seed maturation. The seeds of Panax notoginseng (Burkill) F. H. Chen are typically characterized with the recalcitrance and are highly sensitive to dehydration. However, it is not very well known about the role of LEA proteins in response to dehydration stress in P. notoginseng seeds. We will perform a genome-wide analysis of the LEA gene family and their transcriptional responses to dehydration stress in recalcitrant P. notoginseng seeds.ResultsIn this study, 61 LEA genes were identified from the P. notoginseng genome, and they were renamed as PnoLEA. The PnoLEA genes were classified into seven subfamilies based on the phylogenetic relationships, gene structure and conserved domains. The PnoLEA genes family showed relatively few introns and was highly conserved. Unexpectedly, the LEA_6 subfamily was not found, and the LEA_2 subfamily contained 46 (75.4%) members. Within 19 pairs of fragment duplication events, among them 17 pairs were LEA_2 subfamily. In addition, the expression of the PnoLEA genes was obviously induced under dehydration stress, but the germination rate of P. notoginseng seeds decreased as the dehydration time prolonged.ConclusionsWe found that the lack of the LEA_6 subfamily, the expansion of the LEA_2 subfamily and low transcriptional levels of most PnoLEA genes might be implicated in the recalcitrant formation of P. notoginseng seeds. LEA proteins are essential in the response to dehydration stress in recalcitrant seeds, but the protective effect of LEA protein is not efficient. These results could improve our understanding of the function of LEA proteins in the response of dehydration stress and their contributions to the formation of seed recalcitrance.

Genetic determination of drought resistance in common wheat (Triticum aestivum L.)

The aim of the work is to analyze the literature data on genetic determinants and molecular mechanisms involved in the regulation of adaptation and resistance to drought in common wheat. Results. Regulation of the response to osmotic stress in common wheat is carried out through several abscisic acid-dependent or independent pathways. ABA inhibits the growth processes of aerial parts of the plant by inhibiting the action of auxins and cytokinins, increases the hydraulic conductivity of roots by modulating the activity of aquaporins - membrane water channels, changes the flow of ions in the closing cells of the stomata, which leads to their closure and a decrease in water consumption for transpiration. ABA activates a number of TFs that regulate the expression of genes, the products of which are necessary to eliminate the negative consequences of water deficit. ABA-dependent is activation of the genes of antioxidant defense enzymes - superoxide dismutase, peroxidase, catalase and enzymes of the ascorbate-glutathione cycle. Activators of their transcription are NAC, MYB, WRKY, NF-Y, ZFHD and TaERF3 TFs. Expression of LEA genes and dehydrins, which prevent protein aggregation due to dehydration, is ensured by both ABA-dependent and -independent signal transduction pathways, with the help of AREB/ABF, NAC, MYB, WRKY, AP2/EREBP and ZFHD TFs. ABA also activates the biosynthesis of proline - one of the main low-molecular osmoprotectants that accumulate in the cell and ensure the stability of its water regime. Osmolyte accumulation is regulated by MYB, WRKY, NF-Y and TaERF3 TFs. Conclusions. Thus, in the article is considered the regulatory role of ABA in the formation of drought resistance through molecular interactions involving aquaporins, dehydrins, SNRK2 protein kinases, LEA proteins and their genes, as well as genes of transcription factors NAC, MYB, WRKY, NF-Y, AP/ EREBP, ZFHD, DREB. However, due to the complexity of the wheat genome and the polygenicity of the drought resistance trait, there is currently no line of molecular genetic markers for certain alleles of drought resistance genes that would allow predicting the drought resistance of Ukrainian breeding varieties. The molecular genetic mechanisms underlying drought resistance and the identification of genes with the greatest phenotypic effect, as well as the modeling of the work of these genes at different stages of ontogenesis and the involvement of drought resistance alleles in breeding programs, currently require further research.

The LEA gene family in tomato and its wild relatives: genome-wide identification, structural characterization, expression profiling, and role of SlLEA6 in drought stress

BackgroundLate embryogenesis abundant (LEA) proteins are widely distributed in higher plants and play crucial roles in regulating plant growth and development processes and resisting abiotic stress. Cultivated tomato (Solanum lycopersicum) is an important vegetable crop worldwide; however, its growth, development, yield, and quality are currently severely constrained by abiotic stressors. In contrast, wild tomato species are more tolerant to abiotic stress and can grow normally in extreme environments. The main objective of this study was to identify, characterize, and perform gene expression analysis of LEA protein families from cultivated and wild tomato species to mine candidate genes and determine their potential role in abiotic stress tolerance in tomatoes.ResultsTotal 60, 69, 65, and 60 LEA genes were identified in S. lycopersicum, Solanum pimpinellifolium, Solanum pennellii, and Solanum lycopersicoides, respectively. Characterization results showed that these genes could be divided into eight clusters, with the LEA_2 cluster having the most members. Most LEA genes had few introns and were non-randomly distributed on chromosomes; the promoter regions contained numerous cis-acting regulatory elements related to abiotic stress tolerance and phytohormone responses. Evolutionary analysis showed that LEA genes were highly conserved and that the segmental duplication event played an important role in evolution of the LEA gene family. Transcription and expression pattern analyses revealed different regulatory patterns of LEA genes between cultivated and wild tomato species under normal conditions. Certain S. lycopersicum LEA (SlLEA) genes showed similar expression patterns and played specific roles under different abiotic stress and phytohormone treatments. Gene ontology and protein interaction analyses showed that most LEA genes acted in response to abiotic stimuli and water deficit. Five SlLEA proteins were found to interact with 11 S. lycopersicum WRKY proteins involved in development or resistance to stress. Virus-induced gene silencing of SlLEA6 affected the antioxidant and reactive oxygen species defense systems, increased the degree of cellular damage, and reduced drought resistance in S. lycopersicum.ConclusionThese findings provide comprehensive information on LEA proteins in cultivated and wild tomato species and their possible functions under different abiotic and phytohormone stresses. The study systematically broadens our current understanding of LEA proteins and candidate genes and provides a theoretical basis for future functional studies aimed at improving stress resistance in tomato.

Expression of Genes Involved in ABA and Auxin Metabolism and LEA Gene during Embryogenesis in Hemp.

The level of phytohormones such as abscisic acid (ABA) and auxins (Aux) changes dynamically during embryogenesis. Knowledge of the transcriptional activity of the genes of their metabolic pathways is essential for a deeper understanding of embryogenesis itself; however, it could also help breeding programs of important plants, such as Cannabis sativa, attractive for the pharmaceutical, textile, cosmetic, and food industries. This work aimed to find out how genes of metabolic pathways of Aux (IAA-1, IAA-2, X15-1, X15-2) and ABA (PP2C-1) alongside one member of the LEA gene family (CanLea34) are expressed in embryos depending on the developmental stage and the embryo cultivation in vitro. Walking stick (WS) and mature (M) cultivated and uncultivated embryos of C. sativa cultivars 'KC Dora' and 'USO 31' were analyzed. The RT-qPCR results indicated that for the development of immature (VH) embryos, the genes (IAA-1, IAA-2) are likely to be fundamental. Only an increased expression of the CanLea34 gene was characteristic of the fully maturated (M) embryos. In addition, this feature was significantly increased by cultivation. In conclusion, the cultivation led to the upsurge of expression of all studied genes.

Transcriptome profiling of the chilling response in wheat spikes: II, Response to short-term cold exposure

In this paper we use transcriptome profiling to compare the 4 h and 12 h chilling response in young microspore stage spikes of two wheat lines with contrasting chilling tolerance: chilling-sensitive Wyalkatchem (Wk) and tolerant Young (Yng). In contrast to the previously published paper (4-days chilling), the shorter overnight chilling treatment allowed us to focus on the diversification of early regulatory and metabolic processes in the two wheat lines. The transcriptome results show significant quantitative and qualitative differences in gene expression at the two time points. After 4 h, Wk shows significantly more differentially expressed genes (DEGs) compared to Yng, but a large proportion of these genes are repressed. In Yng, the 4 h cold response is more restrained and most DEGs are cold-induced. After 12 h, the DEG numbers are more comparable between the two lines. GO enrichment analysis was used to identify and compare cold-affected gene functions. After 4 h chilling treatment, genes involved in lipid, sugar, and cell wall metabolism, as well as hormone signalling (SAUR, PP2C, calcium signalling) were mainly repressed in sensitive line Wk, while changes in regulatory factors (APO1, FAR-1, SKP-1) were most notable in tolerant Yng. At both the 4 h and 12 h time points several transcription factors are affected by chilling (Myb, Zinc-finger, bHLH), but the individual genes differ between both wheat lines. After 12 h chilling, LEA genes were induced in Wk only. After 12 h chilling, several SAUR genes are repressed in both wheat lines. Comparison of the response to chilling of lipid metabolism genes indicates that membrane modification starts earlier in tolerant Yng compared to Wk. In contrast, genes involved in deposition of cuticular wax are activated earlier in Wk compared to Yng, but there are significant differences in the response of both wheat lines. Induction of CBF/DREB factors involved in mounting the cold acclimation response occurs earlier in cold-tolerant Yng. The data presented in this paper provide new insights about dynamic and qualitative differences in chilling responses between chilling sensitive and tolerant wheat lines, as well as differences in the kinetics of establishing chilling acclimation.

Post-excision drying of immature Phalaenopsis seeds improves germination and desiccation tolerance

• Immature P halaenopsis seeds cannot tolerate drying and germinate poorly. • Incubation of excised immature seeds without free water increased germination. • Drying excised seeds slowly induced desiccation tolerance. • Excision of seeds induced two LEA protein genes regardless of drying. • Some LEA proteins may increase germinability. Long-term storage of many commercially valuable orchid seeds is uniquely challenging because they can only be germinated in aseptic culture, a practice requiring that fruits be prematurely excised before they dehisce to facilitate sterilization. The seeds from these fruits cannot tolerate the desiccation required for long-term storage, resulting in potential loss of valuable germplasm. Our aim is to develop methods to increase germinability and desiccation tolerance in immature orchid seeds to prepare them for long-term storage and to explore underlying biochemical factors. We assessed germinability, desiccation tolerance and expression of two typical L ate E mbryogenesis A bundant ( LEA) genes in Phalaenopsis amabilis, P. aphrodite and their hybrid seeds as a function of moisture content both during natural development and during experimental treatments of excised immature seeds. Germinability increased whenever excised seeds were incubated in the absence of free water at moisture contents high enough to permit protein synthesis, a treatment which resulted in the rapid (within 24 h) upregulation of two typical LEA genes. Whereas incubating excised seeds without free water at high moisture contents for 4 days improved germination and induced LEA genes, only drying of excised seeds over the course of 4 days induced tolerance to eventual moisture contents less than 10% moisture. In conclusion, our results suggest that the germination of seeds from orchid capsules excised prior to dehiscence (as for the green pod method) is improved by maintaining them for several days following excision at high relative humidity in the absence of free water. Such seeds can also be induced to tolerate desiccation - and thus potentially long term dry storage - by slowly drying them over the course of several days. Our results also support the hypothesis that some of the typical LEA proteins improve germinability but are alone insufficient for the development of desiccation tolerance.

Nanobiotechnological Approaches to Enhance Drought Tolerance in Catharanthus roseus Plants Using Salicylic Acid in Bulk and Nanoform.

Drought has a detrimental effect on crop production, affecting economically important plants’ growth rates and development. Catharanthus roseus is an important medicinal plant that produces many pharmacologically active compounds, some of which have significant antitumor activity. The effect of bulk salicylic acid (SA) and salicylic acid nanoparticles (SA-NPs) were evaluated on water-stressed Catharanthus roseus plants. The results showed that SA and SA-NPs alleviated the negative effects of drought in the treated plants by increasing their shoot and root weights, relative water content, leaf area index, chlorophyll content, and total alkaloids percentage. From the results, a low concentration (0.05 mM) of SA-NPs exerted positive effects on the treated plants, while the best results of the bulk SA were recorded after using the highest concentration (0.1 mM). Both treatments increased the expression level of WRKY1, WRKY2, WRKY40, LEA, and MYC2 genes, while the mRNA level of MPKK1 and MPK6 did not show a significant change. This study discussed the importance of SA-NPs in the induction of drought stress tolerance even when used in low concentrations, in contrast to bulk SA, which exerts significant results only at higher concentrations.

The genome of Prunus humilis provides new insights to drought adaption and population diversity.

Prunus humilis (2n = 2x = 16) is a dwarf shrub fruit tree native to China and distributed widely in the cold and arid northern region. In this study, we obtained the whole genome sequences of P. humilis by combining Illumina, PacBio and HiC sequencing technologies. This genome was 254.38 Mb long and encodes 28,301 putative proteins. Phylogenetic analysis indicated that P. humilis shares the same ancestor with Prunus mume and Prunus armeniaca at ∼ 29.03 Mya. Gene expansion analysis implied that the expansion of WAX-related and LEA genes might be associated with high drought tolerance of P. humilis and LTR maybe one of the driver factors for the drought adaption by increase the copy number of LEAs. Population diversity analysis among 20 P. humilis accessions found that the genetic diversity of P. humilis populations was limited, only 1.40% base pairs were different with each other, and more wild resources need to be collected and utilized in the breeding and improvement. This study provides new insights to the drought adaption and population diversity of P. humilis that could be used as a potential model plant for horticultural research.

Molecular cloning, characterization and expression analysis of two LEA genes in chrysanthemum

Molecular cloning, characterization and expression analysis of two LEA genes in chrysanthemum

Genome-wide identification of LEA gene family and cold response mechanism of BcLEA4-7 and BcLEA4-18 in non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis

Cold stress is a key factor limiting the yield and quality of non-heading Chinese cabbage. The hydrophilic protective protein LEA plays an important role in plant abiotic stress. In this study, 72 BcLEAs were identified from non-heading Chinese cabbage and divided into 9 subfamilies by phylogenetic analysis. Gene structure analysis showed that BcLEAs were unevenly distributed on 10 chromosomes, with few introns. Through analyzing the expression of these genes under cold stress by RNA-seq and qRT-PCR, two genes (BcLEA4–7 and BcLEA4–18) highly sensitive to cold stress were identified, whose roles in cold tolerance of non-heading Chinese cabbage were demonstrated by virus-induced gene silencing. The BcLEA promoters were analyzed to study the cold response mechanism of BcLEA4–7 and BcLEA4–18, revealing that both BcLEA4–7 and BcLEA4–18 promoters contained two CRT/DRE elements. Subsequently, it was found that the promoters isolated from non-heading Chinese cabbage could be activated at low temperatures. Further analysis showed BcCBF2 in non-heading Chinese cabbage interacted with two CRT/DRE elements in BcLEA4–7 and BcLEA4–18 promoters to stimulate their activity, indicating that BcCBF2 is an upstream regulator. Meanwhile, the CRT/DRE element located in BcLEA4–7 promoter (−219 bp to −171 bp) and BcLEA4–18 promoter (−234 bp to −186 bp) was more likely to be activated by BcCBF2, which may be attributed to its flanking sequence. These data laid a foundation for further understanding the functional role and regulatory mechanism of BcLEAs in cold stress tolerance.

Genome-wide identification, evolutionary and expression analyses of LEA gene family in peanut (Arachis hypogaea L.)

BackgroundLate embryogenesis abundant (LEA) proteins are a group of highly hydrophilic glycine-rich proteins, which accumulate in the late stage of seed maturation and are associated with many abiotic stresses. However, few peanut LEA genes had been reported, and the research on the number, location, structure, molecular phylogeny and expression of AhLEAs was very limited.ResultsIn this study, 126 LEA genes were identified in the peanut genome through genome-wide analysis and were further divided into eight groups. Sequence analysis showed that most of the AhLEAs (85.7%) had no or only one intron. LEA genes were randomly distributed on 20 chromosomes. Compared with tandem duplication, segmental duplication played a more critical role in AhLEAs amplication, and 93 segmental duplication AhLEAs and 5 pairs of tandem duplication genes were identified. Synteny analysis showed that some AhLEAs genes come from a common ancestor, and genome rearrangement and translocation occurred among these genomes. Almost all promoters of LEAs contain ABRE, MYB recognition sites, MYC recognition sites, and ERE cis-acting elements, suggesting that the LEA genes were involved in stress response. Gene transcription analyses revealed that most of the LEAs were expressed in the late stages of peanut embryonic development. LEA3 (AH16G06810.1, AH06G03960.1), and Dehydrin (AH07G18700.1, AH17G19710.1) were highly expressed in roots, stems, leaves and flowers. Moreover, 100 AhLEAs were involved in response to drought, low-temperature, or Al stresses. Some LEAs that were regulated by different abiotic stresses were also regulated by hormones including ABA, brassinolide, ethylene and salicylic acid. Interestingly, AhLEAs that were up-regulated by ethylene and salicylic acid showed obvious subfamily preferences. Furthermore, three AhLEA genes, AhLEA1, AhLEA3-1, and AhLEA3-3, which were up-regulated by drought, low-temperature, or Al stresses was proved to enhance cold and Al tolerance in yeast, and AhLEA3-1 enhanced the drought tolerance in yeast.ConclusionsAhLEAs are involved in abiotic stress response, and segmental duplication plays an important role in the evolution and amplification of AhLEAs. The genome-wide identification, classification, evolutionary and transcription analyses of the AhLEA gene family provide a foundation for further exploring the LEA genes’ function in response to abiotic stress in peanuts.

Identification of resurrection genes from the transcriptome of dehydrated and rehydrated Selaginella tamariscina

ABSTRACT Selaginella tamariscina is a lycophyta species that survives under extremely dry conditions via the mechanism of resurrection. This phenomenon involves the regulation of numerous genes that play vital roles in desiccation tolerance and subsequent rehydration. To identify resurrection-related genes, we analyzed the transcriptome between dehydration conditions and rehydration conditions of S. tamariscina. The de novo assembly generated 124,417 transcripts with an average size of 1,000 bp and 87,754 unigenes. Among these genes, 1,267 genes and 634 genes were up and down regulated by rehydration compared to dehydration. To understand gene function, we annotated Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The unigenes encoding early light-inducible protein (ELIP) were down-regulated, whereas pentatricopeptide repeat-containing protein (PPR), late embryogenesis abundant proteins (LEA), sucrose nonfermenting protein (SNF), trehalose phosphate phosphatase (TPP), trehalose phosphate synthase (TPS), and ABC transporter G family (ABCG) were significantly up-regulated in response to rehydration conditions by differentially expressed genes (DEGs) analysis. Several studies provide evidence that these genes play a role in stress environment. The ELIP and PPR genes are involved in chloroplast protection during dehydration and rehydration. LEA, SNF, and trehalose genes are known to be oxidant scavengers that protect the cell structure from the deleterious effect of drought. TPP and TPS genes were found in the starch and sucrose metabolism pathways, which are essential sugar-signaling metabolites regulating plant metabolism and other biological processes. ABC-G gene interacts with abscisic acid (ABA) phytohormone in the stomata opening during stress conditions. Our findings provide valuable information and candidate resurrection genes for future functional analysis aimed at improving the drought tolerance of crop plants.

The aquaporin gene PvXIP1;2 conferring drought resistance identified by GWAS at seedling stage in common bean.

A whole-genome resequencing-derived SNP dataset used for genome-wide association analysis revealed 12 loci significantly associated with drought stress based on survival rate after drought stress at seedling stage. We further confirmed the drought-related function of an aquaporin gene (PvXIP1;2) located at Locus_10. A variety of adverse conditions, including drought stress, severely affect common bean production. Molecular breeding for drought resistance has been proposed as an effective and practical way to improve the drought resistance of common bean. A genome-wide association analysis was conducted to identify drought-related loci based on survival rates at the seedling stage using a natural population consisting of 400 common bean accessions and 3,832,340 SNPs. The coefficient of variation ranged from 40.90 to 56.22% for survival rates in three independent experiments. A total of 12 associated loci containing 89 significant SNPs were identified for survival rates at the seedling stage. Four loci overlapped in the region of the QTLs reported to be associated with drought resistance. According to the expression profiles, gene annotations and references of the functions of homologous genes in Arabidopsis, 39 genes were considered potential candidate genes selected from 199 genes annotated within all associated loci. A stable locus (Locus_10) was identified on chromosome 11, which contained LEA, aquaporin, and proline-rich protein genes. We further confirmed the drought-related function of an aquaporin (PvXIP1;2) located at Locus_10 by expression pattern analysis, phenotypic analysis of PvXIP1;2-overexpressing Arabidopsis and Agrobacterium rhizogenes-mediated hairy root transformation systems, indicating that the association results can facilitate the efficient identification of genes related to drought resistance. These loci and their candidate genes provide a foundation for crop improvement via breeding for drought resistance in common bean.

Effect of progressive drought stress on physio-biochemical responses and gene expression patterns in wheat.

The online version contains supplementary material available at 10.1007/s13205-021-02991-6.

Genome-wide identification and functional characterization of LEA genes during seed development process in linseed flax (Linum usitatissimum L.)

BackgroundLEA proteins are widely distributed in the plant and animal kingdoms, as well as in micro-organisms. LEA genes make up a large family and function in plant protection against a variety of adverse conditions.ResultsBioinformatics approaches were adopted to identify LEA genes in the flax genome. In total, we found 50 LEA genes in the genome. We also conducted analyses of the physicochemical parameters and subcellular location of the genes and generated a phylogenetic tree. LuLEA genes were unevenly mapped among 15 flax chromosomes and 90% of the genes had less than two introns. Expression profiles of LuLEA showed that most LuLEA genes were expressed at a late stage of seed development. Functionally, the LuLEA1 gene reduced seed size and fatty acid contents in LuLEA1-overexpressed transgenic Arabidopsis lines.ConclusionOur study adds valuable knowledge about LEA genes in flax which can be used to improve related genes of seed development.