Aqueous extracts of three aromatic and medicinal plants, viz. lemongrass (Cymbopogon citratus), laurel (Laurus nobilis) and cotton-lavender (Santolina chamaecyparissus) were tested against the growth of Fusarium oxysporum f. sp. lentis. The aqueous extracts concentrations were evaluated from 0.05 to 20 mg/mL. Ultra-High-Performance Liquid Chromatography (UHPLC)-Quadrupole-Time-of-Flight-Mass Spectrometer and UHPLC-potato dextrose agar were used to identify and quantify the major phenolic compounds. Lemongrass extract revealed the best antifungal activity; a concentration of 0.05 mg/mL inhibited 67% of conidial germination and 77% sporulation, 5 mg/mL restrain 70% of mycelial growth and 20 mg/mL stopped almost completely the pathogen. The extracts of laurel and cotton-lavender exhibited a moderate inhibition on conidial germination and mycelial growth even at 20 mg/mL, while laurel extracts inhibited 75% of sporulation at 0.05 mg/mL. Four phenolic acids and 16 flavonoids were identified and quantified in the three aqueous extracts. Luteolin derivatives represent 96% of the phenolic compounds identified in lemongrass while procyanidin and caffeic acid derivatives represent 76% and 96% in laurel and cotton-lavender, respectively. Our investigation demonstrates that lemongrass was an actual source of aqueous extract with a biomolecule content that could effectively be used for the control of lentil Fusarium wilt.