Lateral Diffusion Coefficient Research Articles

Cryptotanshinone-Induced Permeabilization of Model Phospholipid Membranes: A Biophysical Study.

The Danshen terpenoid cryptotanshinone (CPT) is gaining enormous interest in light of its various outstanding biological activities. Among those, CPT has been shown to interact with cell membranes and, for instance, to have antibacterial activity. Several works have shown that CPT alone, or in combination with other drugs, can effectively act as an antibiotic against various infectious bacteria. Some authors have related the mechanism underlying this action to CPT-membrane interaction. This work shows that CPT readily partitions into phosphatidylcholine membranes, but there is a limiting capacity of accommodation of ca. 1 mol CPT to 3 mol phospholipid. The addition of CPT to unilamellar liposomes composed of 1-palmitoyl-2-oleoylphosphatidylcholine (POPC) causes membrane permeabilization, as shown by fluorescent probe leakage. This process has been kinetically studied, as well as its modulation by incorporation of phosphatidylethanolamine or phosphatidylglycerol, as a model for pathogenic cell membranes. The thermotropic behavior of 1,2-dimyristoylphosphatidylcholine (DMPC) model membranes is weakly affected by CPT, but the terpenoid causes significant dehydration of the polar region of the bilayer and weak disordering of the acyl chain palisade, as observed in Fourier-transform infrared spectroscopy (FTIR) results. Small-angle X-ray scattering (SAXS) shows that CPT increases DMPC bilayer thickness, which could be due to localization near the phospholipid/water interface. Molecular dynamics (MD) simulations show that the lateral diffusion coefficient of the phospholipid increases with the presence of CPT. CPT extends from the polar head region to the center of the bilayer, being centered between the carbonyl groups and the unsaturated region of the POPC, where there is greater overlap. Interestingly, the free energy profiles of a water molecule crossing the lipid membrane show that the POPC membrane becomes more permeable in the presence of CPT. In summary, our results show that CPT perturbs the physicochemical properties of the phospholipid membrane and compromises its barrier function, which could be of relevance to explain part of its antimicrobial or anticancer activities.

Manufacturing process of liposomal Formation: A coarse-grained molecular dynamics simulation

A method of producing liposomes has been previously developed using a continuous manufacturing technology that involves a co-axial turbulent jet in co-flow. In this study, coarse-grained molecular dynamics (CG-MD) simulations were used to gain a deeper understanding of how the self-assembly process of liposomes is affected by the material attributes (such as the concentration of ethanol) and the process parameters (such as temperature), while also providing detailed information on a nano-scale molecular level. Specifically, the CG-MD simulations yield a comprehensive internal view of the structure and formation mechanisms of liposomes containing DPPC, DPPG, and cholesterol molecules. The importance of this work is that structural details on the molecular level are proposed, and such detail is not possible to obtain through experimental studies alone. The assessment of structural properties, including the area per lipid, diffusion coefficient, and order parameters, indicated that a thicker bilayer was observed at higher ethanol concentrations, while a thinner bilayer was present at higher temperatures. These conditions led to more water penetrating the interior of the bilayer and an unstable structure, as indicated by a larger contact area between lipids and water, and a higher coefficient of lipid lateral diffusion. However, stable liposomes were found through these evaluations at lower ethanol concentrations and/or lower process temperatures. Furthermore, the CG-MD model was further compared and validated with experimental and computational data including liposomal bilayer thickness and area per lipid measurements.

Dynamic structure of E. coli cytoplasm: supramolecular complexes and cell aging impact spatial distribution and mobility of proteins

Protein diffusion is a critical factor governing the functioning and organization of a cell’s cytoplasm. In this study, we investigate the influence of (poly)ribosome distribution, cell aging, protein aggregation, and biomolecular condensate formation on protein mobility within the E. coli cytoplasm. We employ nanoscale single-molecule displacement mapping (SMdM) to determine the spatial distribution of the proteins and to meticulously track their diffusion. We show that the distribution of polysomes does not impact the lateral diffusion coefficients of proteins. However, the degradation of mRNA induced by rifampicin treatment leads to an increase in protein mobility within the cytoplasm. Additionally, we establish a significant correlation between cell aging, the asymmetric localization of protein aggregates and reduced diffusion coefficients at the cell poles. Notably, we observe variations in the hindrance of diffusion at the poles and the central nucleoid region for small and large proteins, and we reveal differences between the old and new pole of the cell. Collectively, our research highlights cellular processes and mechanisms responsible for spatially organizing the bacterial cytoplasm into domains with different structural features and apparent viscosity.

Transport Dynamics of Water Molecules Confined between Lipid Membranes.

Water molecules confined between biological membranes exhibit a distinctive non-Gaussian displacement distribution, far different from that of bulk water. Here, we introduce a new transport equation for water molecules in the intermembrane space, quantitatively explaining molecular dynamics simulation results. We find that the unique transport dynamics of water molecules stems from the lateral diffusion coefficient fluctuation caused by their longitudinal motion in the direction perpendicular to the membranes. We also identify an interfacial region where water possesses distinct physical properties, which is unaffected by changes in the intermembrane separation.

Numerical simulation of velocity distribution and pollution transport in a two-stage channel with vegetation on a floodplain

Compound cross-sections are common forms of river cross-sections in nature. Due to their more complex structure, it is more difficult to study their hydrodynamic and pollutant transport characteristics. How to establish effective models to simulate such conditions has recently become a hot topic of attention. The work presented in this article establishes a numerical model to simulate the flow velocity and pollutant transport in a compound cross-section channel using the lattice Boltzmann method and random displacement method to study the hydrodynamic and pollutant transport characteristics under flexible vegetation cover. The model can effectively generalize the vegetation drag force on the floodplain of the compound cross-section and provide the distribution pattern of flow velocity under uneven vegetation cover. At the same time, the lateral diffusion coefficients of pollutants on the main channel and floodplain are provided separately. These have higher accuracy than those determined by traditional methods that rely on simple longitudinal diffusion coefficients. This study can provide a theoretical reference for optimizing vegetation planting in compound cross-section channels.

Quantitative Comparison against Experiments Reveals Imperfections in Force Fields' Descriptions of POPC-Cholesterol Interactions.

Cholesterol is a central building block in biomembranes, where it induces orientational order, slows diffusion, renders the membrane stiffer, and drives domain formation. Molecular dynamics (MD) simulations have played a crucial role in resolving these effects at the molecular level; yet, it has recently become evident that different MD force fields predict quantitatively different behavior. Although easily neglected, identifying such limitations is increasingly important as the field rapidly progresses toward simulations of complex membranes mimicking the in vivo conditions: pertinent multicomponent simulations must capture accurately the interactions between their fundamental building blocks, such as phospholipids and cholesterol. Here, we define quantitative quality measures for simulations of binary lipid mixtures in membranes against the C-H bond order parameters and lateral diffusion coefficients from NMR spectroscopy as well as the form factors from X-ray scattering. Based on these measures, we perform a systematic evaluation of the ability of commonly used force fields to describe the structure and dynamics of binary mixtures of palmitoyloleoylphosphatidylcholine (POPC) and cholesterol. None of the tested force fields clearly outperforms the others across the tested properties and conditions. Still, the Slipids parameters provide the best overall performance in our tests, especially when dynamic properties are included in the evaluation. The quality evaluation metrics introduced in this work will, particularly, foster future force field development and refinement for multicomponent membranes using automated approaches.

Micro-scale simulation of adsorption-diffusion behaviors of nanoparticles onto mobile oil/water interface

A novel, hybrid pore-scale simulation method using Lattice-Boltzmann (LB) coupled with Langevin-Dynamics (LD) is proposed to investigate the physics of nanoparticles onto oil/water interface. Based on the LB method, the high-resolution characterization of oil-water interface is established. Then, in a fashion of discrete LB forcing source distribution, the LD method is introduced to characterize the effects of Brownian motion, thermal fluctuation-dissipation, multi-body hydrodynamics, and particle-particle interactions. By the means of the new LB-LD coupling model, the adsorption and diffusion characterization of nanoparticles onto oil/water interface are investigated. Moreover, by introducing the interference coefficient and non-equilibrium time, a modified Langmuir adsorption equation is first established by more accurately quantifying the adsorption characterization of nanoparticles and the consequent impacts onto the oil/water interfacial force (IFT), which cannot be accurately described by the classical Langmuir model. For the example of SiO2 nanoparticles adsorption, it is observed that small-size nanofluids with high concentration could accelerate the adsorption of nanoparticles. In addition, both the lateral and longitudinal diffusion coefficients of nanoparticles in the water phase and onto interface are obtained, and of which the underlying mechanisms are explained by introducing residual oil. The proposed simulation method provides valuable insights into how nanoparticles adsorb and diffuse onto oil/water interface and how oil/water IFT can be reduced.

Effect of xenon, an apolar general anaesthetic on the properties of the DPPC bilayer

The effect of xenon, a general anaesthetic, on the properties of the fully hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer is investigated by molecular dynamics simulations with two different force fields. Considering the well-known pressure reversal of the anaesthetic effect, we are looking for such changes that are reverted by the increase of the pressure, and hence can be relevant in explaining the molecular mechanism of general anesthesia. The results show that, besides its main preference for staying in the middle of the membrane, xenon also has a secondary preference for positions at the outer boundary of the hydrocarbon region, close to the crowded domain of the polar headgroups. This outer preference is a result of the interplay of the increasing attraction the xenon atoms experience and the decreasing free volume available for them upon going away from the middle of the membrane. It also turns out that any change that might be relevant in explaining the anaesthetic effect is related to xenon atoms staying in this outer preferred position. Since the model we employed does not account for the polarizability of the xenon atoms, and hence misses a part of the thermodynamic driving force of the preference for this outer position, all results should be considered as a lower bound estimate of the real effect. It is found that the xenon atoms induce a lateral swelling of the membrane by pushing the DPPC molecules farther away from each other, which, due to the insensitivity of the membrane thickness to the presence of xenon, naturally results in an increase of also the membrane volume. On the other hand, pressure increases the membrane thickness by increasing the order of the lipid tails, while it also causes a lateral shrinking of the bilayer. The net effect of these two opposite contributions is still a decrease of the membrane volume. In the light of these results, we propose to refine the 70 years old ‘critical volume hypothesis’ to a ‘critical surface area hypothesis’, claiming that general anesthesia occurs if the molar surface area of the membrane exceeds a critical value. Finally, the xenon-induced lateral swelling results in an increase of the empty space in the hydrocarbon region, allowing the DPPC molecules to move more freely, and hence increasing their lateral diffusion coefficient. All these changes are clearly reverted by pressure, and thus may well be relevant in respect of the molecular mechanism of general anesthesia.

Prediction of Adsorption and Diffusion of Shale Gas in Composite Pores Consisting of Kaolinite and Kerogen using Molecular Simulation.

Natural gas production from shale formations is one of the most recent and fast growing developments in the oil and gas industry. The accurate prediction of the adsorption and transport of shale gas is essential for estimating shale gas production capacity and improving existing extractions. To realistically represent heterogeneous shale formations, a composite pore model was built from a kaolinite slit mesopore hosting a kerogen matrix. Moreover, empty slabs (2, 3, and 4 nm) were added between the kerogen matrix and siloxane surface of kaolinite. Using Grand-Canonical Monte Carlo (GCMC) and molecular dynamics (MD) simulations, the adsorption and diffusion of pure methane, pure ethane, and a shale gas mixture were computed at various high pressures (100, 150, and 250 atm) and temperature of 298.15 K. The addition of an inner slit pore was found to significantly increase the excess adsorption of methane, as a pure component and in the shale gas mixture. The saturation of the composite pore with methane was observed to be at a higher pressure compared to ethane. The excess adsorption of carbon dioxide was not largely affected by pressure, and the local number density profile showed its strong affinity to kerogen micropores and the hydroxylated gibbsite surface under all conditions and pore widths. Lateral diffusion coefficients were found to increase with increasing the width of the empty slab inside the composite pore. Statistical errors of diffusion coefficients were found to be large for the case of shale gas components present at low composition. A larger composite pore configuration was created to investigate the diffusion of methane in different regions of the composite pore. The calculated diffusion coefficients and mean residence times were found to be indicative of the different adsorption mechanisms occurring inside the pore.

Interaction of neutral and protonated Tamoxifen with the DPPC lipid bilayer using molecular dynamics simulation

Tamoxifen as an antiestrogen is successfully applied for the clinical treatment of breast cancer in pre- and post-menopausal women. Due to the side effects related to the oral administration of Tamoxifen (such as deep vein thrombosis, pulmonary embolism, hot flushes, ocular disturbances and some types of cancer), liposomal drug delivery is recommended for taking this drug. Drug encapsulation in a liposomal or lipid drug delivery system improves the pharmacokinetic and pharmacodynamic properties. In this regard, we carried out 200-ns molecular dynamics (MD) simulations for three systems (pure DPPC and neutral and protonated Tamoxifen-loaded DPPC). Here, DPPC is a model lipid bilayer to provide us with conditions like liposomal drug delivery systems to investigate the interactions between Tamoxifen and DPPC lipid bilayers and to estimate the preferred location and orientation of the drug molecule inside the bilayer membrane.Properties such as area per lipid, membrane thickness, lateral diffusion coefficient, order parameters and mass density, were surveyed. With insertion of neutral and protonated Tamoxifen inside the DPPC lipid bilayers, area per lipid and membrane thickness increased slightly. Also, Tamoxifen induce ordering of the hydrocarbon chains in DPPC bilayer. Analysis of MD trajectories shows that neutral Tamoxifen is predominantly found in the hydrophobic tail region, whereas protonated Tamoxifen is located at the lipid–water interface (polar region of DPPC lipid bilayers).

Surfactant Proteins SP-B and SP-C in Pulmonary Surfactant Monolayers: Physical Properties Controlled by Specific Protein-Lipid Interactions.

The lining of the alveoli is covered by pulmonary surfactant, a complex mixture of surface-active lipids and proteins that enables efficient gas exchange between inhaled air and the circulation. Despite decades of advancements in the study of the pulmonary surfactant, the molecular scale behavior of the surfactant and the inherent role of the number of different lipids and proteins in surfactant behavior are not fully understood. The most important proteins in this complex system are the surfactant proteins SP-B and SP-C. Given this, in this work we performed nonequilibrium all-atom molecular dynamics simulations to study the interplay of SP-B and SP-C with multicomponent lipid monolayers mimicking the pulmonary surfactant in composition. The simulations were complemented by z-scan fluorescence correlation spectroscopy and atomic force microscopy measurements. Our state-of-the-art simulation model reproduces experimental pressure-area isotherms and lateral diffusion coefficients. In agreement with previous research, the inclusion of either SP-B and SP-C increases surface pressure, and our simulations provide a molecular scale explanation for this effect: The proteins display preferential lipid interactions with phosphatidylglycerol, they reside predominantly in the lipid acyl chain region, and they partition into the liquid expanded phase or even induce it in an otherwise packed monolayer. The latter effect is also visible in our atomic force microscopy images. The research done contributes to a better understanding of the roles of specific lipids and proteins in surfactant function, thus helping to develop better synthetic products for surfactant replacement therapy used in the treatment of many fatal lung-related injuries and diseases.

Role of Dual Nature of Ionic Liquid in Solvation Dynamics and Rotational Diffusion in Mixed Micelles: A Time‐Resolved Fluorescence and Fluorescence Anisotropy Study

AbstractThe present work demonstrates the role of the dual nature of an ionic liquid, 1‐dodecyl‐3‐methylimidazolium bromide (C12mimBr), in the solvation dynamics and rotational diffusion of Coumarin 153 (C‐153) in the aqueous mixed micellar solutions of three cationic gemini surfactants, 12‐s‐12,2Br− (where s = 4, 6 and 8) using different spectroscopic and light scattering techniques. Ionic liquid within the micelles controls the weightages of solvation components. In pure micelles of a gemini surfactant, the fast and slow solvation components are major and minor, respectively, which vary based on the concentration of the ionic liquid. The effective solvation rate enhances with increasing concentration of C12mimBr. Dual nature of C12mimBr governs the size of mixed micelles. Thus the associated time constant for rotational motion also alters accordingly. In micelle, lateral diffusion coefficient (DL) value enhances with its increasing size due to mixed micelle's increased porosity. Gemini spacer chain length effect is also discussed.

Phospholipid lateral diffusion in the presence of cationic peptides as measured via 31P CODEX NMR

The effects of two cationic peptides on phospholipid lateral diffusion in binary mixtures of POPC with various anionic phospholipids were measured via 31P CODEX NMR. Large unilamellar vesicles composed of POPC/POPG (70/30 mol/mol), or POPC/DOPS (70/30 mol/mol), or POPC/TOCL (85/15 mol/mol), or POPC/DOPA (50/50 mol/mol) were exposed to either polylysine (pLYS, N = 134 monomers) or KL-14 (KKLL KKAKK LLKKL), a model amphipathic helical peptide, in an amount corresponding to 80% neutralization of the anionic phospholipid charge by the cationic lysine residues. In the absence of added peptide, phospholipid lateral diffusion coefficients (all measured at 10 °C) increased with increasing reduced temperature (T-Tm). The POPC/DOPA mixture was an exception to this generalization, in that lateral diffusion for both components was far slower than any other mixture investigated, an effect attributed to intermolecular hydrogen bonding. The addition of pLYS or KL-14 decreased lateral diffusion in the POPC/DOPS LUV, but had minimal effects in the POPC/POPG LUV, indicating that ease of access of the cationic peptide residues to the anionic phospholipid groups was important. Both cationic peptides produced the opposite effect in the POPC/DOPA case, in that lateral diffusion increased significantly in their presence, with KL-14 being most effective. This latter observation was interpreted in terms of the electrostatic / H-bond model proposed by Kooijman et al. [Journal of Biological Chemistry, 282:11356–11,364, 2007] to describe the mechanism of interaction between the phosphomonoester head group of PA and the tertiary amine of lysine.

Characterizing and tuning the bacterial synthetic adhesion biophysics for biomaterial applications.

Bacterial synthetic multi-cellular (SMC) systems present promising characteristics as engineering platforms for developing complex products in the areas of medicine, biosynthesis and smart materials. This work has been recently advanced by the development of a genetically encoded toolkit of surface-bound nanobodies and antigens via the intimin autotransporter in E. coli that can enable precise manipulation of cell-cell adhesion and design of self-assembled multicellular patterns. However, it is necessary to be able to predict how adhering cells behave inside synthetic consortia and more specifically, how the adhesins behave on the surface of each of these cells, in order to advance the functionality of the adhesin toolkit at the subcellular level. We quantitatively measured the key biophysical (kinetic) parameters that determine dynamics (and mechanics) of the synthetic adhesins on the cell surface, such as the lateral diffusion coefficient, the production and degradation rates and the binding force between two complementary adhesins. The complete characterization of the adhesin construct enables us to further their application in the field of engineered living materials (ELMs). We show that tuning the adhesin biophysical parameters at a microscopic level can change the biomaterial properties at a macroscopic level. These results are critical for rational engineering and modeling synthetic adhesins and ultimately multicellular synthetic consortia and will also be valuable for researchers working with this intimin and potentially other autotransporter and nanobodies in various other contexts by providing the methodology for the characterization of future synthetic adhesins.

Viscosity reduction mechanism of functionalized silica nanoparticles in heavy oil-water system

The in-depth study of the viscosity reduction mechanism of nanoparticles (NPs) is especially important for the extraction of heavy oil resources. In this work, molecular dynamics (MD) simulation was used to investigate the effect of the difference in hydrophilicity/hydrophobicity of the grafted molecules on the viscosity reduction process of functionalized SiO2 NPs in heavy oil. First, we investigated the distribution of various molecules in the oil-water system, and it was found that the asphaltene and resin components in heavy oil were adsorbed on the surface of the functionalized SiO2 NPs. And with the increase of the surface lipophilicity or grafting density of the surface of the NPs, the more obvious this adsorption phenomenon is. Then, we also found that the ability to adsorb asphaltene and reduce interfacial tension between oil and water was significantly enhanced with the increase of lipophilicity on the surface of the nanoparticle viscosity reducers. And the GLA-K-SiO2 nanoparticle viscosity reducer can reduce the interfacial tension from 51.102 mN/m to 41.956 mN/m, showing the best ability to reduce interfacial tension. In addition, the amphiphilic NPs have both high longitudinal and lateral diffusion coefficients, so they diffuse more easily into the oil phase system and more favorable for adsorption of oil-phase components. Finally, by comparing the adsorption structures of asphaltene on the surface of different functionalized SiO2 NPs, two adsorption configurations were obtained: vertical or large inclined adsorption and parallel or slightly inclined adsorption. Most importantly, it was found that functionalized SiO2 NPs could disassemble the asphaltene large accumulation structure into small asphaltene clusters, which reducing the viscosity of the heavy oil. This work is of great significance to the design and study of grafted nanoparticle viscosity reducers.

Curcumin Accelerates the Lateral Motion of DPPC Membranes.

Curcumin, the main ingredient in turmeric, has attracted attention due to its potential anti-inflammatory, anticancer, wound-healing, and antioxidant properties. Though curcumin efficacy is related to its interaction with biomembranes, there are few reports on the effects of curcumin on the lateral motion of lipids, a fundamental process in the cell membrane. Employing the quasielastic neutron scattering technique, we explore the effects of curcumin on the lateral diffusion of the dipalmotylphosphatidylcholine (DPPC) membrane. Our investigation is also supported by Fourier transform infrared spectroscopy, dynamic light scattering, and calorimetry to understand the interaction between curcumin and the DPPC membrane. It is found that curcumin significantly modulates the packing arrangement and conformations of DPPC lipid, leading to enhanced membrane dynamics. In particular, we find that the presence of curcumin substantially accelerates the DPPC lateral motion in both ordered and fluid phases. The effects are more pronounced in the ordered phase where the lateral diffusion coefficient increases by 23% in comparison to 9% in the fluid phase. Our measurements provide critical insights into molecular mechanisms underlying increased lateral diffusion. In contrast, the localized internal motions of DPPC are barely altered, except for a marginal enhancement observed in the ordered phase. In essence, these findings indicate that curcumin is favorably located at the membrane interface rather than in a transbilayer configuration. Further, the unambiguous evidence that curcumin modulates the membrane dynamics at a molecular level supports a possible action mechanism in which curcumin can act as an allosteric regulator of membrane functionality.

Robust Heterostructures in Two-Dimensional Perovskites by Threshold-Dominating Anion Exchange.

Heterostructures play an irreplaceable role in high-performance optoelectronic devices. However, the preparation of robust perovskite heterostructures is challenging due to spontaneous interdiffusion of halogen anions. Herein, a vapor-phase anion exchange method universally suitable for the preparation of robust 2D Ruddlesden-Popper perovskite (RPP) heterostructures is developed. A variety of heterostructures are fabricated based on exfoliated RPP microplates (MPs). Depending on the specific organic cations, the heterostructures can be either sharp and uniform, or broad and gradient, suggesting a new anion diffusion behavior different from that in 3D perovskites. Further experimental studies reveal that the lateral transport of anions follows a threshold-dominating mechanism, while the vertical transport can be partially or completely suppressed by organic cations. Subsequently, quantitative investigation of anion diffusion in 2D perovskites is conducted. The lateral diffusion coefficient of halogen anions is calculated to be 6 to 7 orders of magnitude larger than the vertical coefficient, consistent with the observed highly anisotropic anion diffusion. In addition, it is shown that the anion exchange threshold can also enhance the thermodynamic stability of the heterostructures at elevated temperature. These results provide a general method to fabricate robust lateral RPP heterostructures, and offer important insights into anion behavior in low-dimensional perovskites.

Spatial distribution of single guest molecules along thickness of thin films of poly(2-hydroxyethyl acrylate).

We have investigated three-dimensional distribution and diffusion behaviors of single guest dyes in 1-µm thick films of poly(2-hydroxyethyl acrylate) (PHEA) by using astigmatism imaging method. Perylene diimide derivative (BP-PDI) in the PHEA films localized along the Z-axis at ca. Z = 600-700nm distant from the interface (Z = 0) between PHEA and glass substrate. This Z-localization was not observed in different polymer films of poly(methyl methacrylate) (PMMA), poly(methyl acrylate) (PMA), and polystyrene (PSt). Because the glass transition temperature of the PHEA is lower than the room temperature, BP-PDI in the PHEA films exhibited Brownian motion, normal diffusion on the XY plane and confined motion along the Z-direction. For elucidating the mechanism of the peculiar localization of the guest dyes along film thickness in the PHEA films, we measured diffusion behaviors of different dyes, R6G and Atto 488, in 1-µm thick PHEA films, obtaining result that the Z-distributions of the dyes were overall similar to that of BP-PDI. The result indicates that the Z-localization of the guest dyes should be ascribed not to the interaction between glass surface and guest dye but mainly to the Z-dependent property of the PHEA film. Indeed, the lateral diffusion coefficients of the guest dyes depended on their Z-positions.

Взаимодействие катионных антисептиков с кардиолипинсодержащей модельной бактериальной мембраной

Plasma membrane is one of the major targets for cationic antiseptics (CA). The study was aimed to assess molecular effects of CAs of different chemical classes on cardiolipin-containing regions of bacterial plasma membranes. The study was carried out using coarse-grained molecular modeling. Interaction of CAs, such as miramistin, chlorhexidine, picloxidine, and octenidine, with cardiolipin-containing bilayer was assessed based on the CA coarse-grained models. CAs reduced lipid lateral diffusion coefficients and increased the membrane area per lipid. All CAs, except miramistin, reduced the lipid fatty acid chain order parameters. Adding octenidine at a CA : lipid ratio of 1 : 4 resulted in cardiolipin clustering with subsequent pulling the neutral phosphatidylethanolamine molecules out of the model bilayer. It was found that CАs have the potential for sorption to lipid bilayer, causing clustering of negatively charged lipids. Antiseptic octenidine causes formation of cardiolipin microdomains. Abnormal lateral lipid distribution together with pulling out phosphatidylethanolamine molecules can result in increased lipid bilayer permeability. The most significant reduction of cardiolipin lateral diffusion coefficient by 2.8 ± 0.4 times was observed in the presence of CA chlorhexidine at an antiseptic : lipid ratio of 1 : 4.

Laboratory study of the effects of flexible vegetation on solute diffusion in unidirectional flow

BackgroundFlexible vegetation is an important part of the riverine ecosystem, which can reduce flow velocity, change turbulence structure, and affect the processes of solute transport. Compared with the flow with rigid vegetation, which has been reported in many previous studies, bending of flexible vegetation increases the complexity of the flow–vegetation–solute interactions. In this study, laboratory experiments are carried out to investigate the influence of flexible vegetation on solute transport, and methods for estimating the lateral and longitudinal diffusion coefficients in the rigid vegetated flow are examined for their applications to the flow with flexible vegetation.ResultsThe experimental observations find that vegetation can significantly reduce flow velocity, and the Manning coefficient increases with increasing vegetation density and decreases with inflow discharge. Under all the cases, the vertical peak of the solute concentration moves towards the bottom bed along the flow, and the values of vertical peak concentration longitudinally decreases from the injection point. The lateral diffusion coefficients Dy increase with vegetation density, while the longitudinal diffusion coefficients DL are opposite. Both Dy and DL increase with the inflow discharge. To estimate the Dy and DL in the flow with flexible vegetation, an effective submerged vegetation height considering vegetation bending is incorporated in the methods proposed for flow with rigid vegetation (Lou et al. Environ Sci Eur 32:15, 2020). The modified approach can well predict the diffusion coefficients in the experiments with the relative errors in the range of 5%–12%.ConclusionsThe methods proposed in this study can be used to estimate the lateral and longitudinal diffusion coefficients in flows through both rigid and flexible vegetations using the effective submerged vegetation height.