Trees adapt to changing environmental conditions largely by regulating growth processes, and ongoing climate aridization puts pressure on growth processes during spring and summer. However, trees can be limited in their ability to utilize favourable early-season and late-season conditions for growth, and many of these limitations can be due to shortages in auxin transport and/or signalling. We studied whether leaf spraying with auxins in spring and autumn can aid in the growth of Pinus sylvestris and Picea abies saplings. In spring, spruce demonstrated prominent positive effects of auxin supplementation on the growth of current-year shoot and xylem growth, with increased xylem cell formation, whereas a limited effect was observed in pine. Autumnal auxin treatment had prominent positive effects on the growth of the root system and xylem area in pine, activating xylem cell enlargement and increasing carbon deposition in cell walls. In spruce, the effects of auxin spraying on xylem growth were less prominent, and the effects on root growth were absent compared to those in pine. The metabolome analysis of pine organs demonstrated that the activation of growth processes in the xylem and roots was accompanied by a decrease in nonstructural carbohydrates in the cambial zone but an increase in roots, indicating that auxin influenced the link between growth and carbon balance in an organ-specific manner. The major amino acid content was not influenced by auxin treatment. The observed results indicate that changes in the auxin balance during the autumnal period can activate growth processes to increase plant adaptation to changing climate conditions.