Recent advancements in in situ analytical techniques have generated new interest in measuring strontium (Sr) isotopes in rock-forming apatite and apatite inclusions in zircon, because they can bring new insights into the primary signatures of magmatic sources. This paper introduces a novel approach based on laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS), which allows to achieve higher precision in situ analysis of Sr isotopes in small volumes of samples. The use of 1013 Ω current amplifiers for the acquisition of the signal on m/z 83, 83.5, 84, 85, 85.5, 86, 86.5, 87 and 88, along with a specific data reduction protocol, enhance both the internal precision and the external reproducibility of the 87Sr/86Sr ratio by a factor of four, presenting a significant improvement over the conventional use of 1011 Ω amplifiers. An internal precision better than 0.45‰ (i.e. 450 ppm; 2 s.e.) on the 87Sr/86Sr ratio can be achieved on the Durango apatite standard with a 13 μm square-shaped laser beam and a laser ablation pit of 60 μm depth. With a 5 μm beam, the precision is 2.2‰ on average with a 10 μm ablation pit depth for this standard. This analytical procedure was applied to investigate Sr isotopes in apatite and apatite inclusions within zircons from seven high BaSr magmatic rocks in the Northern Highland Terrane, Scotland. For these well-characterised, geochemically undisturbed samples, the data reveals similar Sr isotope compositions between apatite inclusions armoured in zircon, matrix apatites, and the bulk rock. This highlights the ability of apatite inclusions to faithfully record primary signatures of host magmas, elucidating their utility as reliable indicators in petrological studies of ancient samples.