Large-scale Diversity Patterns Research Articles

Continental sampling reveals core bacterial and environmentally driven fungal leaf endophytes in Heuchera.

Endophytic plant-microbe interactions range from mutualistic relationships that confer important ecological and agricultural traits to neutral or quasi-parasitic relationships. In contrast to root-associated endophytes, the role of environmental and host-related factors in the acquisition of leaf endophyte communities at broad spatial and phylogenetic scales remains sparsely studied. We assessed endofoliar diversity to test the hypothesis that membership in these microbial communities is driven primarily by abiotic environment and host phylogeny. We used a broad geographic coverage of North America in the genus Heuchera L. (Saxifragaceae), representing 32 species and varieties across 161 populations. Bacterial and fungal communities were characterized using 16S and ITS amplicon sequencing, respectively, and standard diversity metrics were calculated. We assembled environmental predictors for microbial diversity at collection sites, including latitude, elevation, temperature, precipitation, and soil parameters. Assembly patterns differed between bacterial and fungal endophytes. Host phylogeny was significantly associated with bacteria, while geographic distance was the best predictor of fungal community composition. Species richness and phylogenetic diversity were consistent across sites and species, with only fungi showing a response to aridity and precipitation for some metrics. Unlike what has been observed with root-associated microbial communities, in this system microbes show no relationship with pH or other soil factors. Overall, this work improves our understanding of the large-scale patterns of diversity and community composition in leaf endophytes and highlights the relative significance of environmental and host-related factors in driving different microbial communities within the leaf microbiome.

Geographic patterns and environmental correlates of taxonomic, phylogenetic and functional β-diversity of wetland plants in the Qinghai-Tibet Plateau

The Qinghai-Tibet Plateau (QTP) harbours the largest wetland complex in China, with a relatively high diversity of wetland plants. While there has been extensive research on the α-diversity of various plant groups in the QTP, the study of β-diversity specifically in wetland plants has been limited. In this study, we quantified the geographic pattern of wetland plant β-diversity from three dimensions: taxonomic, phylogenetic, and functional. We assessed the relative importance of geographic distance, climatic distance, environmental distance and topographic distance on the pattern of β-diversity. The results indicate a high consistency in the geographic pattern of wetland plant β-diversity across the three dimensions. β-diversity is high in the mountainous regions at the edge of the plateau and relatively low in the plateau platform. The turnover component contributes more to taxonomic β-diversity than nestedness, whereas the opposite is true for phylogenetic and functional β-diversity. Furthermore, taxonomic β-diversity is higher than phylogenetic and functional β-diversity. The geographic patterns of taxonomic, phylogenetic and functional diversity of wetland plants in the QTP are jointly influenced by environmental filtering and dispersal limitation. Climatic variables (temperature seasonality, annual precipitation, precipitation seasonality and annual mean temperature) and topographic variables (elevation variation coefficient, elevation and slope) were identified as the main factors influencing wetland plant β-diversity in the QTP. Overall, this study contributes to elucidating the evolutionary history and formation mechanisms of wetland plant communities in the QTP, and reveals the large-scale patterns of wetland plant diversity.

Body size and trophic structure explain global asymmetric response of tetrapod diversity to climate effects.

Although climate-based hypotheses are widely used to explain large-scale diversity patterns, they fall short of explaining the spatial variation among taxonomic groups. Integrating food web and metabolic theories into macroecology is a promising step forward, as they allow including explicit taxon-specific traits that can potentially mediate the relationship between climate and diversity. Our investigation focuses on the role of body size and trophic structure in mediating the influence of contemporary climate and historical climate change on global tetrapods species richness. We used piecewise structural equation modeling to assess the direct effects of contemporary climate and climate instability of species richness and the indirect effects of climate on tetrapod richness mediated by community-wide species traits. We found that birds and mammals are less sensitive to the direct effect of contemporary climate than amphibians and squamates. Contemporary climate and climate instability favored the species richness of mammals and amphibians. However, for birds and squamates, this link is only associated with contemporary climate. Moreover, we showed that community-wide traits are correlated with species richness gradients. However, we highlight that this relationship is dependent upon the specific traits and taxonomic groups. Specifically, bird communities with smaller bodies and bottom-heavy structures support higher species richness. Squamates also tend to be more diverse in communities with prevalence of smaller bodies, while mammals are correlated with top-heavy structures. Moreover, we showed that higher contemporary climate and climate instability reduce the species richness of birds and mammals through community-wide traits and indirectly increase squamate species richness. We also showed that body size and trophic structure are driving a global asymmetric response of tetrapod diversity to climate effects, which highlights the limitation to use the "typical" climate-based hypotheses. Furthermore, by combining multiple theories, our research contributes to a more realistic and mechanistic understanding of diversity patterns across taxonomic groups.

Mapping density, diversity and species-richness of the Amazon tree flora

Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by forest type, as predictor, our spatial model, to the best of our knowledge, provides the most accurate map of tree diversity in Amazonia to date, explaining approximately 70% of the tree diversity and species-richness. Large soil-forest combinations determine a significant percentage of the variation in tree species-richness and tree alpha-diversity in Amazonian forest-plots. We suggest that the size and fragmentation of these systems drive their large-scale diversity patterns and hence local diversity. A model not using location but cumulative water deficit, tree density, and temperature seasonality explains 47% of the tree species-richness in the terra-firme forest in Amazonia. Over large areas across Amazonia, residuals of this relationship are small and poorly spatially structured, suggesting that much of the residual variation may be local. The Guyana Shield area has consistently negative residuals, showing that this area has lower tree species-richness than expected by our models. We provide extensive plot meta-data, including tree density, tree alpha-diversity and tree species-richness results and gridded maps at 0.1-degree resolution.

Impress of Climate Change in the Himalaya on Plant Evolution

Currently, species diversity has become a hotpot to biologist. Some researchers find mountains contribute disproportionately to Earth's terrestrial biodiversity, especially in the tropics, where there are unusually rich and confusing hot spots. But current assumptions about large-scale geographic patterns of species diversity cannot explain the extremely high biodiversity in mountain regions, especially in the tropics, where is characterized by a complex spatial configuration of terrain and climate. This paper focuses on three prominent and brief factors which impact species differentiation most in Himalaya to illuminate some researches up to now, include geographical, climatic, and biological. Geographic affect plant diversity by bring alien species, and format monsoon and plateau environment through uplift. Monsoon can advance the formation of landform also. Further, the period climate change can induce variation of endemic species, and the pollinator can impact variation by reproduction, thus the mismatch between pollinator and plants recently may lead the decline of certain species. Besides these, nowadays palynology evidence has become a credible two-way entry point to research plant evolution and climate change in the past era by authenticating how subspecies formatted. What’s more, because the vagaries of climate have prompted the breeding of endemic species, the rising temperature currently may alter the vegetation in alpine area.

Ocean kinetic energy and photosynthetic biomass are important drivers of planktonic foraminifera diversity in the Atlantic Ocean

To assess the anthropogenic effect on biodiversity, it is essential to understand the global diversity distribution of the major groups at the base of the food chain, ideally before global warming initiation (1850 Common Era CE). Since organisms in the plankton are highly interconnected and carbonate synthesizing species have a good preservation state in the Atlantic Ocean, the diversity distribution pattern of planktonic foraminifera from 1741 core-top surface sediment samples (expanded ForCenS database) provides a case study to comprehend centennial to decadal time-averaged diversity patterns at pre-1970 CE times, the tempo of the substantial increase in tropospheric warming. In this work, it is hypothesized and tested for the first time, that the large-scale diversity patterns of foraminifera communities are determined by sea surface temperature (SST, representing energy), Chl-a (a surrogate for photosynthetic biomass), and ocean kinetic energy (as EKE). Alpha diversity was estimated using species richness (S), Shannon Wiener index (H), and Simpson evenness (E), and mapped using geostatistical approaches. The three indices are significantly related to SST, Chl-a, and EKE (71-88% of the deviance in the generalized additive mixed model, including a spatial component). Beta diversity was studied through species turnover using gradient forest analysis (59% of the variation). The primary community thresholds of foraminifera species turnover were associated with 5-10 °C and 22-28 °C SST, 0.05-0.15 mg m-3 Chl-a, and 1.2-2.0 cm2 s-2 log10 EKE energy, respectively. Six of the most important foraminifera species identified for the environmental thresholds of beta diversity are also fundamental in transfer functions, further reinforcing the approaches used. The geographic location of the transition between the four main biogeographic zones was redefined based on the results of beta diversity analysis and incorporating the new datasets, identifying the major marine latitudinal gradients, the most important upwelling areas (Benguela Current, Canary Current), the Equatorial divergence, and the subtropical fronts (Gulf Stream-North Atlantic Drift path in the north, and the South Atlantic current in the south). In conclusion, we provide statistical proof that energy (SST), food supply (Chl-a), and currents (EKE) are the main environmental drivers shaping planktonic foraminifera diversity in the Atlantic ocean and define the associated thresholds for species change on those variables.

Functional traits and phylogeny explain snake distribution in the world's largest dry forest ecoregion, the Gran Chaco.

Macroecological studies describe large-scale diversity patterns through analyses of species distribution patterns and allows us to elucidate how species differing in ecology, physical requirements, and life histories are distributed in a multidimensional space. These patterns of distributions can be explained by vegetation, and climatic factors, and are determined by historical and current factors. The continuous accumulation of information on the distribution patterns of species is essential to understand the history and evolution of the biota. In this study, we aimed to identify functional and evolutionary drivers that explain the geographic patterns of vertical stratification. We compiled morphological, ecological, and distribution data of 140 species of Chacoan snakes and constructed null models to map their geographic pattern. We used a range of environmental variables to assess which drivers are influencing these biogeographic patterns. Lastly, we used evolutionary data to build the first map of the phylogenetic regions of Chacoan snakes. We found a latitudinal pattern, with a marked verticality in the snake assemblies in the Chaco. Verticality and long-tailed species richness increased in areas with high stratified habitats and stable temperature. Fossoriality is driven mainly by soil conditions, especially soils with fewer sand particles and less stratified habitat. Phylogenetic regions in the Chaco showed a marked latitudinal pattern, like that observed in the geographic pattern of verticality. The distribution pattern of Chacoan snakes also reflects their evolutionary history, with a marked phylogenetic regionalization.

Vineyards compared to natural vegetation maintain high arthropod species turnover but alter trait diversity and composition of assemblages

Agriculture is a major contributor to habitat transformation, homogenising biological communities, and reducing biodiversity at local and regional scales. Over time, biotic homogenisation causes regional biotas to become genetically, taxonomically, and functionally similar, impacting the functioning and resilience of natural and agricultural systems. Here, we assessed alpha and beta diversity, trait diversity, and trait composition of spider and beetle assemblages in biodiversity-friendly vineyards and natural fynbos vegetation (a low-growing sclerophyllous vegetation type) in the Cape Floristic Region biodiversity hotspot to evaluate the influence of viticulture on large-scale patterns of arthropod diversity. Transects spanning from vineyards into fynbos were used to analyse differences in arthropod assemblages between the two biotopes. Spider species richness was significantly higher in fynbos compared to vineyards, but both systems supported relatively high spider and beetle alpha diversity. Spider beta diversity did not differ between the systems, but beetle beta diversity was significantly lower in vineyards. This difference was due to a lower level of assemblage nestedness, whereas beetle species replacement was similar in vineyards and fynbos. Only spider trait richness and beetle trait divergence were significantly lower in vineyards compared to fynbos. Assemblage composition of both taxonomic groups differed between biotopes, due to different species trait associations with each biotope. Plant-dwelling spiders and small-bodied beetles were strongly positively associated with fynbos, and predatory beetles with vineyards. Common spiders and predatory beetles were strongly negatively associated with fynbos. Our results indicate that vineyards support high arthropod diversity when compared to the natural vegetation. This supports the concept that sensitively managed agroecosystems can maintain species-rich assemblages at different spatial scales.

Phylogeography and Prevalence of Hemoparasites (Apicomplexa: Eucoccidiorida) in Galápagos Marine Iguanas, Amblyrhynchus cristatus (Reptilia: Iguanidae).

Simple SummaryIt is estimated that a vast diversity of parasites populate our planet, many of them still to be discovered. Blood parasites (hemoparasites) of the phylum Apicomplexa may infect both vertebrates and invertebrates. Here, we used molecular methods to characterize the diversity of hemoparasites in the emblematic Galápagos marine iguana. We examined major island populations of marine iguanas across the Galápagos archipelago, performing the largest biogeographical study on the topic in this species. In addition, ticks were collected from marine iguana’s body to screen for hemoparasites. Our genetic analysis revealed two distinct clusters of hemoparasites belonging to Hepatozoon and/or Hemolivia. The occurrence of hemoparasites differed dramatically across islands, indicating that some populations may have mechanisms to reduce infection rates. The infection status of ticks did not match with their marine iguana hosts, suggesting that this method cannot be used to reliably know whether or not marine iguanas are infected. Given that apicomplexan blood parasites may cause important zoonotic diseases, studies like this one focusing on the relationship between parasites, their hosts and transmitting vectors, may help to shed light on the underlying mechanisms that wild animals employ to cope with pathogen infection. Parasitism is among the most common forms of coexistence of organisms of different species. Hemoparasites live in the bloodstream of the host where they complete different life-cycle stages. Members of the phylum Apicomplexa constitute a large portion of all hemoparasites infecting reptiles and their parasite transmitting vectors, including arthropods. In this study, we carried out a survey and molecular identification of hemoparasites in blood samples of the iconic Galápagos marine iguana (Amblyrhynchus cristatus). Major island populations of marine iguanas were sampled to examine large-scale biogeographic patterns of parasite diversity and prevalence. Nested PCRs were used to amplify segments of the 18S rRNA-gene of hemoparasites. Furthermore, ticks attached to marine iguanas were collected and analyzed in the same way to assess their potential use as a non-invasive method for the detection of hemoparasites in vertebrate host species. PCR products were sequenced and a phylogenetic analysis was carried out showing the presence of two genetically distinct clusters of hemoparasites, one more commonly distributed than the other one, belonging to the genera Hepatozoon and/or Hemolivia (Apicomplexa: Eucoccidiorida). Overall, 25% of marine iguanas were infected by hemoparasites. However, infection rates varied strongly among particular island populations (from 3.45% to 50%). Although marine iguanas are an extremely mobile species that has colonized all islands in the Galápagos archipelago, parasite occurrence was not related to geographical distance, suggesting that dispersal behavior has a minor role in parasite transmission. On most islands, females tended to have higher infection rates than males, but this relationship was only significant on one island. Overall, ticks and marine iguanas had similar prevalence and diversity of parasites. However, the infection profiles of ticks and their corresponding hosts (marine iguanas) did not mirror one another, indicating that this method cannot be used reliably to assess marine iguana infection status. Interestingly, we found that hemoparasite prevalence in marine iguanas and ticks tended to be positively correlated across islands. Our results indicate that certain populations of marine iguanas may have special mechanisms and adaptations to cope with parasite infection. In addition, other factors such as vector density, anthropogenic-related activities or the immunological state of marine iguanas could potentially affect the striking variation in hemoparasite prevalence across island populations.

Linking Land Use and Plant Functional Diversity Patterns in Sabah, Borneo, through Large-Scale Spatially Continuous Sentinel-2 Inference

Global biodiversity losses erode the functioning of our vital ecosystems. Functional diversity is increasingly recognized as a critical link between biodiversity and ecosystem functioning. Satellite earth observation was proposed to address the current absence of information on large-scale continuous patterns of plant functional diversity. This study demonstrates the inference and spatial mapping of functional diversity metrics through satellite remote sensing over a large key biodiversity region (Sabah, Malaysian Borneo, ~53,000 km2) and compares the derived estimates across a land-use gradient as an initial qualitative assessment to test the potential merits of the approach. Functional traits (leaf water content, chlorophyll-a and -b, and leaf area index) were estimated from Sentinel-2 spectral reflectance using a pre-trained neural network on radiative transfer modeling simulations. Multivariate functional diversity metrics were calculated, including functional richness, divergence, and evenness. Spatial patterns of functional diversity were related to land-use data distinguishing intact forest, logged forest, and oil palm plantations. Spatial patterns of satellite remotely sensed functional diversity are significantly related to differences in land use. Intact forests, as well as logged forests, featured consistently higher functional diversity compared to oil palm plantations. Differences were profound for functional divergence, whereas functional richness exhibited relatively large variances within land-use classes. By linking large-scale patterns of functional diversity as derived from satellite remote sensing to land-use information, this study indicated initial responsiveness to broad human disturbance gradients over large geographical and spatially contiguous extents. Despite uncertainties about the accuracy of the spatial patterns, this study provides a coherent early application of satellite-derived functional diversity toward further validation of its responsiveness across ecological gradients.

Species Persistence with Hybridization in Toad-Headed Lizards Driven by Divergent Selection and Low Recombination.

Speciation plays a central role in evolutionary studies, and particularly how reproductive isolation (RI) evolves. The origins and persistence of RI are distinct processes that require separate evaluations. Treating them separately clarifies the drivers of speciation and then it is possible to link the processes to understand large-scale patterns of diversity. Recent genomic studies have focused predominantly on how species or RI originate. However, we know little about how species persist in face of gene flow. Here, we evaluate a contact zone of two closely related toad-headed lizards (Phrynocephalus) using a chromosome-level genome assembly and population genomics. To some extent, recent asymmetric introgression from Phrynocephalus putjatai to P. vlangalii reduces their genomic differences. However, their highly divergent regions (HDRs) have heterogeneous distributions across the genomes. Functional gene annotation indicates that many genes within HDRs are involved in reproduction and RI. Compared with allopatric populations, contact areas exhibit recent divergent selection on the HDRs and a lower population recombination rate. Taken together, this implies that divergent selection and low genetic recombination help maintain RI. This study provides insights into the genomic mechanisms that drive RI and two species persistence in the face of gene flow during the late stage of speciation.

Southeast Alaskan kelp forests: inferences of process from large-scale patterns of variation in space and time.

Humans were considered external drivers in much foundational ecological research. A recognition that humans are embedded in the complex interaction networks we study can provide new insight into our ecological paradigms. Here, we use time-series data spanning three decades to explore the effects of human harvesting on otter–urchin–kelp trophic cascades in southeast Alaska. These effects were inferred from variation in sea urchin and kelp abundance following the post fur trade repatriation of otters and a subsequent localized reduction of otters by human harvest in one location. In an example of a classic trophic cascade, otter repatriation was followed by a 99% reduction in urchin biomass density and a greater than 99% increase in kelp density region wide. Recent spatially concentrated harvesting of otters was associated with a localized 70% decline in otter abundance in one location, with urchins increasing and kelps declining in accordance with the spatial pattern of otter occupancy within that region. While the otter–urchin–kelp trophic cascade has been associated with alternative community states at the regional scale, this research highlights how small-scale variability in otter occupancy, ostensibly due to spatial variability in harvesting or the risk landscape for otters, can result in within-region patchiness in these community states.

Incongruent Spatial Distribution of Taxonomic, Phylogenetic, and Functional Diversity in Neotropical Cocosoid Palms

Biodiversity can be quantified by taxonomic, phylogenetic, and functional diversity. Current evidence points to a lack of congruence between the spatial distribution of these facets due to evolutionary and ecological constraints. A lack of congruence is especially evident between phylogenetic and taxonomic diversity since the name and number of species are an artificial, yet commonly used, way to measure biodiversity. Here we hypothesize that due to evolutionary constraints that link phylogenetic and functional diversity, areas with higher phylogenetic and functional diversity will be spatially congruent in Neotropical cocosoid palms, but neither will be congruent with areas of high taxonomic diversity. Also, we hypothesize that any congruent pattern differs between rainforests and seasonally dry forests, since these palms recently colonized and diversified in seasonally dry ecosystems. We use ecological niche modeling, a phylogenetic tree and a trait database to test the spatial congruence of the three facets of biodiversity. Taxonomic and phylogenetic diversity were negatively correlated. Phylogenetic and functional diversity were positively correlated, even though their spatial congruence was lower than expected at random. Taken together, our results suggest that studies focusing solely on large-scale patterns of taxonomic diversity are missing a wealth of information on diversification potential and ecosystem functioning.

Elevational patterns of functional diversity and trait of Delphinium (Ranunculaceae) in Hengduan Mountains, China

Elevational patterns of trait occurrence and functional diversity provide an important perspective for understanding biodiversity. However, previous studies have mostly examined functional diversity at the community scale. Here, we examined large-scale patterns of trait occurrence and functional diversity in Delphinium along an elevational gradient from 1000 to 5700 m in the Hengduan Mountains, SW China. Elevational distribution and trait data of 102 Delphinium species were compiled to evaluate the patterns of interspecific traits, species richness, and functional diversity. We found that the distribution of species richness showed a unimodal curve that peaked between 3500 and 4000 m; functional diversity and traits showed different patterns along an elevational gradient. The functional diversity increased at a lower rate along an elevation gradient, whereas species richness continued to increase. Species with large ranges and non-endemic species were most affected by geometric constraints. Richness of species endemic to the Hengduan Mountains peaked at higher elevations, likely due to increased speciation and restricted dispersion under alpine conditions. We conclude that the middle elevation region is not only the functionally richest but also the most functionally stable region for Delphinium, which could be insurance against environmental change. Extreme conditions and strong environmental filters in an alpine environment may cause the convergence of species traits, which could relate to reducing nutrient trait investment and increasing reproductive trait investment. We conclude that large-scale studies are consistent with previous studies at the community scale. This may indicate that the relationship between functional diversity and species richness across different scales is the same.

The Effects of Multi-Scale Climate Variability on Biodiversity Patterns of Chinese Evergreen Broad-Leaved Woody Plants: Growth Form Matters

Large-scale patterns of species diversity are thought to be linked to contemporary climate variability and Quaternary glacial–interglacial climate change. For plants, growth forms integrate traits related to competition or migration capacity, which determine their abilities to deal with the climate variability they face. Evergreen broad-leaved woody plants (EBWPs) are major components of numerous biomes in the subtropical and tropical regions. Hence, incorporating phylogenetic (temporal) and biogeographic (spatial) approaches, we assessed the relative importance of short- and long-term climate variability for biodiversity patterns of different growth forms (i.e., tree, shrub, liana, and bamboo) in EBWPs. We used a dated phylogeny and the distribution records for 6,265 EBWP species which are naturally occurred in China, and computed the corrected weighted endemism, standardized phylogenetic diversity and net relatedness index for the four growth forms, respectively. Ordinary least squares linear regressions, spatial error simultaneous autoregressive models, partial regression and hierarchical variation partitioning were employed to estimate the explanatory power of contemporary climate variability and climate-change velocity from the Last Glacial Maximum to the present. Our results showed that short- and long-term climate variability play complementary role in the biogeographic patterns of Chinese EBWPs. The former had larger effects, but the legacy effects of past climate changes were also remarkable. There were also differences in the effects of historical and current climate among the four growth forms, which support growth forms as a critical plant trait in predicting vegetation response to climate change. Compared to the glacial-interglacial climate fluctuation, seasonality as a unique feature of mid-latitude monsoon climate played a dominant role in the diversification and distribution of EBWP species at the macroscale. The results indicated that the relative importance of climate variability at different temporal scales may relate to distinct mechanisms. To understand effects of future climate change on species distribution more thoroughly, climate conditions in different time scales should be incorporated.

Spatial patterns and conservation of genetic and phylogenetic diversity of wildlife in China.

Genetic diversity and phylogenetic diversity reflect the evolutionary potential and history of species, respectively. However, the levels and spatial patterns of genetic and phylogenetic diversity of wildlife at the regional scale have largely remained unclear. Here, we performed meta-analyses of genetic diversity in Chinese terrestrial vertebrates based on three genetic markers and investigated their phylogenetic diversity based on a dated phylogenetic tree of 2461 species. We detected strong positive spatial correlations among mitochondrial DNA-based genetic diversity, phylogenetic diversity, and species richness. Moreover, the terrestrial vertebrates harbored higher genetic and phylogenetic diversity in South China and Southwest China than in other regions. Last, climatic factors (precipitation and temperature) had significant positive effects while altitude and human population density had significant negative impacts on levels of mitochondrial DNA-based genetic diversity in most cases. Our findings will help guide national-level genetic diversity conservation plans and a post-2020 biodiversity conservation framework.

Towards mapping the diversity of canopy structure from space with GEDI

Plant biodiversity supports life on Earth and provides a range of important ecosystem services, but is under severe pressure by global change. Structural diversity plays a crucial role for carbon, water and energy cycles and animal habitats. However, it is very difficult to map and monitor over large areas, limiting our ability to assess the status of biodiversity and predict change. NASA’s Global Ecosystem Dynamics Investigation (GEDI) provides a new opportunity to measure 3D plant canopy structure of the world’s temperate, Mediterranean and tropical ecosystems, but its potential to map structural diversity is not yet tested. Here, we use wall-to-wall airborne laser scanning (ALS) to simulate GEDI data (GEDIsim) over 7380 km2 in the southern Sierra Nevada mountains in California and evaluate how well GEDI’s sampling scheme captures patterns of structural diversity. We evaluate functional richness and functional beta diversity in a biodiversity hot spot. GEDIsim performed well for trait retrievals (r2 = 0.68) and functional richness mapping (r2 = 0.75) compared to ALS retrievals, despite lower correlations in complex terrain with steep slopes. Functional richness patterns were strongly associated with soil organic carbon stocks and density as well as variables related to water availability and could be appropriately mapped by GEDIsim with and without cloud cover. Functional beta diversity was more strongly related to local changes in topography and more challenging to map, especially with decreasing sampling density. The reduced number of GEDIsim shots when simulating cloud cover lead to a strong overestimation of beta diversity and a reduction of r2 from 0.64 to 0.40 compared to ALS. The ability to map functional richness has been demonstrated with potential application at continental scales that could be transformative for our understanding of large-scale patterns of plant canopy structure, diversity and potential links to animal diversity, movement and habitats.

Biomes are everybody's kingdom: a platform where ecology and biogeography meet

Proches’ (2020) criticism of Mucina's (2019) research review on the evolution of the biome concept raises several points. It argues that evolutionary history is a tool reserved for delimiting phytochoria (phytogeographic regions) and it is not appropriate for biomes. Proches notes that the ‘only things biomes and kingdoms [phytochoria] have in common is that they both have to be globally mappable’. This statement bears on our understanding of the biome as an ecological‐evolutionary concept, and on how phytochoria and biomes are recognized (or delimited) and mapped. In the following, I respond to Proches' arguments that will demonstrate a divergence in our thinking regarding the conceptual framework for differences in the delimitation of biomes and phytochory.

The South African National Red List of spiders: patterns, threats, and conservation

Triage in conservation biology necessitates the prioritization of species and ecosystems for conservation. Although highly diverse, ecologically important, and charismatic, spiders are rarely considered. With 2,253 known species, South Africa's spider diversity is among the highest in the world. A 22-year initiative culminating in a national assessment of all the South African species saw a 33% increase in described species and a 350% rise in specimen accessions of the national collection annually. Endemism is high, at 60% of all South African species. Levels of endemicity are particularly high in Fynbos, Succulent Karroo and Forests. Relative to its area, Forests have three times more endemics than any of the other biomes, followed by the Indian Ocean Coastal Belt. A total of 127 species (5.7%) are either rare or endangered. Threats to these species are largely linked to habitat destruction in the form of urbanization and agriculture. The bulk (62.8%) of taxa are of least concern, but many species are data deficient (27%). Predicted large-scale diversity patterns are confounded by the localised nature of distribution records. Best estimates of compositional turnover point to an east-west bias in our understanding and conservation of spiders in the country, a bias that is most acute in the north-western parts of the country because this region has seen less collecting and has fewer conservation estates. In general, rare and threatened species are mainly ground-dwelling taxa that are either relictual or have poor dispersal abilities. Complemented with long-term surveys that will provide insights into population dynamics of spiders, exploring the use of species traits in predicting extinction probability could provide additional criteria for conservation prioritization. Based on these assessments, targeted species-level interventions might provide a platform for more public awareness and institutional involvement.

Climate mediates continental scale patterns of stream microbial functional diversity

BackgroundUnderstanding the large-scale patterns of microbial functional diversity is essential for anticipating climate change impacts on ecosystems worldwide. However, studies of functional biogeography remain scarce for microorganisms, especially in freshwater ecosystems. Here we study 15,289 functional genes of stream biofilm microbes along three elevational gradients in Norway, Spain and China.ResultsWe find that alpha diversity declines towards high elevations and assemblage composition shows increasing turnover with greater elevational distances. These elevational patterns are highly consistent across mountains, kingdoms and functional categories and exhibit the strongest trends in China due to its largest environmental gradients. Across mountains, functional gene assemblages differ in alpha diversity and composition between the mountains in Europe and Asia. Climate, such as mean temperature of the warmest quarter or mean precipitation of the coldest quarter, is the best predictor of alpha diversity and assemblage composition at both mountain and continental scales, with local non-climatic predictors gaining more importance at mountain scale. Under future climate, we project substantial variations in alpha diversity and assemblage composition across the Eurasian river network, primarily occurring in northern and central regions, respectively.ConclusionsWe conclude that climate controls microbial functional gene diversity in streams at large spatial scales; therefore, the underlying ecosystem processes are highly sensitive to climate variations, especially at high latitudes. This biogeographical framework for microbial functional diversity serves as a baseline to anticipate ecosystem responses and biogeochemical feedback to ongoing climate change.BSweEpkETcG1op9mYTCivQVideo