Cryptomeria japonica (Japanese cedar) in Japan plantations are aging, and the main supply of timber in the market is shifting from small- and medium-diameter to large-diameter logs. The effective utilization of these logs has become an important issue in the timber industry. When producing timber-without-pith from large-diameter logs, an unavoidable warp occurs because of the release of residual stress within the logs. Utilizing high-temperature drying with a load on these timbers has achieved significant drying effects, and the residual stress-induced warp was corrected. However, high-temperature drying has drawbacks, such as high energy consumption and the potential for thermal degradation. We applied low-vacuum-medium-temperature drying (LVMT-drying, 10 days, 40 kPa, 80/55 °C (DB/WB)—90/65 °C (DB/WB)) with load (650 kgf/m2) to the stacked timber sawn from large-diameter logs to address these questions. When LVMT-drying was successful, residual stresses in timber-with-pith were reduced to nearly zero, and warps in timber-without-pith were reduced to less than 8 mm, i.e., below the Japan Agriculture Standard "Level 1" for 4000 mm timber, and the acceptance rate for "Level 1" increased from 45% (green timber) to 85% (treated timber) in the most successful sample. LVMT-drying is a practical drying method for timber from large-diameter logs because it is effective in reducing residual stress and correcting warps while shortening the treatment period and avoiding thermal degradation.