This article aimed to provide an overview of relative and absolute sea level rise in the Baltic Sea based on different studies, where researchers have used data from tide gauges, satellite altimetry, sea level rise, and land uplift models. These results provide an opportunity to get an overview of the sea level rise in the Baltic Sea. However, to better understand the impact of sea level rise on the coastal area of the Baltic Sea, and especially in Estonia, two post-glacial land uplift models, the latest land uplift model NKG2016LU of the Nordic Commission of Geodesy (NKG) and Estonian land uplift model EST2020VEL, were used. These models enabled to eliminate post-glacial land uplift from absolute sea level rise. To determine the relative sea level rise in the coastal area of the Baltic Sea, the rates from land uplift models were compared to ESA’s BalticSEAL absolute sea level rise model. It was found that the relative sea level rise between 1995–2019 was −5 to 4.5 mm/yr (based on NKG2016LU) in the Baltic Sea. In addition, the southern area is more affected by relative sea level rise than the northern part. During the research, it was also found that the IPCC AR5 sea level projections predict a maximum relative sea level rise in the Baltic Sea by the year 2100 of between 0.3 to 0.7 m. As coastal areas in the southern part of the Baltic Sea are predominantly flat, the sea level may reach the real estate properties by the end of the 21st century. In the coastal area of Estonia, the relative sea level rise in the period 1995–2019 was −1.1 to 3.1 mm/yr (based on NKG2016LU) and −0.3 to 3.4 mm/yr (based on EST2020VEL), the difference between the land uplift models is −0.9 to 0.1 mm/y. In Estonia, the west and southwest area are most threatened by sea level rise, where the coast is quite flat. One of the largest cities in Estonia, Pärnu, is also located there. Using the ESA’s sea level and EST2020VEL land uplift models, it was found that the relative sea level rise will be 0.28 m by the year 2100. Based on the large spatial resolution IPCC AR5 sea level projections, the relative sea level rise will be on the same scale: 0.2–0.4 m.