Land use and land cover change (LULCC) have profoundly altered land surface properties and ecosystem functions, including carbon and water production. While mapping these changes from local to global scales has become more achievable due to advancements in earth observations and remote sensing, linking land cover changes to ecosystem functions remains challenging, especially at regional scale. Our study attempts to fill this gap by employing a computationally efficient method and two types of widely used high-resolution satellite images. We first investigated the contribution of landscape composition to ecosystem function by examining how land cover and proportion affected gross primary production (GPP) and evapotranspiration (ET) at six macro-landscapes in Mongolia and Kazakhstan. We hypothesized that both ecosystem and landscape GPP and ET are disproportionate to their composition and, therefore, changes in land cover will have asymmetrical influences on landscape functions. We leveraged a computational-friendly linear downscaling approach to align the coarse spatial resolution of MODIS (500 m) with a fine-grain and localized land cover map developed from Landsat (30 m) for six provinces in countries where intensive LULCC occurred in recent decades. By establishing two metrics—function to composition ratio (F/C) and function to changes in composition change (ΔF/ΔC)—we tested our hypothesis and evaluated the impact of land cover change on ecosystem functions within and among the landscapes. Our results show three major themes. (1) The five land cover types have signature downscaled ET and GPP that appears to vary between the two countries as well as within each country. (2) F/C of ET and GPP of forests is statistically greater than 1 (i.e., over-contributing), whereas F/C of grasslands and croplands is close to or slightly less than 1 (i.e., under-contribution). F/C of barrens is clearly lower than 1 but greater than zero. Specifically, a unit of forest generates 1.085 unit of ET and 1.123 unit of GPP, a unit of grassland generates 0.993 unit of ET and GPP, and a unit of cropland produces 0.987 unit of ET and 0.983 unit of GPP. The divergent F/C values among the land cover classes support the hypothesis that landscape function is disproportionate to its composition. (3) ΔET/ΔC and ΔGPP/ΔC of forests and croplands showed negative values, while grasslands and barrens showed positive values, indicating that converting a unit of forest to other land cover leads to a decrease in ET and GPP, while converting units of grassland or barren to other land cover classes will result in increased ET and GPP. This linear downscaling approach for calculating F/C and ΔF/ΔC is labor-saving and cost-effective for rapid assessment on the impact of land use land cover change on ecosystem functions.