Lake Dagow Research Articles

Southern Appalachian Peatlands Support High Archaeal Diversity

Mid-latitude peatlands with a temperate climate are sparsely studied and as such represent a gap in the current knowledge base regarding archaeal populations present and their roles in these environments. Phylogenetic analysis of the archaeal populations among three peatlands in the Southern Appalachians reveal not only methanogenic species but also significant populations of thaumarchaeal and crenarchaeal-related organisms of the uncultured miscellaneous crenarchaeotal group (MCG) and the terrestrial group 1.1c, as well as deep-branching Euryarchaeota primarily within the Lake Dagow sediment and rice cluster V lineages. The Thaum/Crenarchaea and deep-branching Euryarchaea represented approximately 24-83% and 2-18%, respectively, of the total SSU rRNA clones retrieved in each library, and methanogens represented approximately 14-72% of the clones retrieved. Several taxa that are either rare or novel to acidic peatlands were detected including the euryarchaeal SM1K20 cluster and thaumarchaeal/crenarchaeal-related clusters 1.1a, C3, SAGMCG-1, pSL12, and AK59. All three major groups (methanogens, Thaumarchaea/Crenarchaea, and deep-branching Euryarchaea) were detected in the RNA library, suggesting at least a minimum level of maintenance activity. Compared to their northern counterparts, Southern Appalachian peatlands appear to harbor a relatively high diversity of Archaea and exhibit a high level of intra-site heterogeneity.

Local Conditions Structure Unique Archaeal Communities in the Anoxic Sediments of Meromictic Lake Kivu

Meromictic Lake Kivu is renowned for its enormous quantity of methane dissolved in the hypolimnion. The methane is primarily of biological origin, and its concentration has been increasing in the past half-century. Insight into the origin of methane production in Lake Kivu has become relevant with the recent commercial extraction of methane from the hypolimnion. This study provides the first culture-independent approach to identifying the archaeal communities present in Lake Kivu sediments at the sediment-water interface. Terminal restriction fragment length polymorphism analysis suggests considerable heterogeneity in the archaeal community composition at varying sample locations. This diversity reflects changes in the geochemical conditions in the sediment and the overlying water, which are an effect of local groundwater inflows. A more in-depth look at the archaeal community composition by clone library analysis revealed diverse phylogenies of Euryarchaeota and Crenarachaeota. Many of the sequences in the clone libraries belonged to globally distributed archaeal clades such as the rice cluster V and Lake Dagow sediment environmental clusters. Several of the determined clades were previously thought to be rare among freshwater sediment Archaea (e.g., sequences related to the SAGMEG-1 clade). Surprisingly, there was no observed relation of clones to known hydrogentrophic methanogens and less than 2 % of clones were related to acetoclastic methanogens. The local variability, diversity, and novelty of the archaeal community structure in Lake Kivu should be considered when making assumptions on the biogeochemical functioning of its sediments.

Dissolved reactive manganese at pelagic redoxclines (part II): Hydrodynamic conditions for accumulation

Dissolved reactive Mn (dMnreact) has been determined at the redoxclines of two anoxic deeps from the Baltic Sea (Landsort Deep and Gotland Basin) and two seasonally anoxic freshwater lakes (Lake Dagow and Fuchskuhle, Germany). This dMnreact fraction is rapidly oxidised under oxygen atmosphere and is assumed to consist predominantly of Mn(III). There is a distinct increase of dMnreact from the outer regions towards the central part of the Landsort Deep. Although the presence of MnOx particles in the Gotland Basin is evidence of ongoing oxidation of reduced Mn species, almost no dMnreact was detected. Since completely different processes of Mn oxidation appear rather unlikely, we suggest oceanographic properties are responsible. Lateral currents and intrusions in the Gotland Basin seem to prevent the formation of a stable suboxic zone, a prerequisite necessary for accumulation of dMnreact. Such perturbations supply trace amounts of O2 and H2S, causing either immediate oxidation/reduction of dMnreact or deterioration of its stabilising ligands. dMnreact has also been determined in Lake Dagow with values significantly exceeding the level of the Landsort Deep due to stable stratification of this lake. In contrast, H2S appearance throughout the entire water column and a pH <5 prevent accumulation of dMnreact in Lake Fuchskuhle.

Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota

Despite its widespread distribution and high levels of phylogenetic diversity, microbes are poorly understood creatures. We applied a phylogenetic ecology approach in the Kingdom Euryarchaeota (Archaea) to gain insight into the environmental distribution and evolutionary history of one of the most ubiquitous and largely unknown microbial groups. We compiled 16S rRNA gene sequences from our own sequence libraries and public genetic databases for two of the most widespread mesophilic Euryarchaeota clades, Lake Dagow Sediment (LDS) and Rice Cluster-V (RC-V). The inferred population history indicated that both groups have undergone specific nonrandom evolution within environments, with several noteworthy habitat transition events. Remarkably, the LDS and RC-V groups had enormous levels of genetic diversity when compared with other microbial groups, and proliferation of sequences within each single clade was accompanied by significant ecological differentiation. Additionally, the freshwater Euryarchaeota counterparts unexpectedly showed high phylogenetic diversity, possibly promoted by their environmental adaptability and the heterogeneous nature of freshwater ecosystems. The temporal phylogenetic diversification pattern of these freshwater Euryarchaeota was concentrated both in early times and recently, similarly to other much less diverse but deeply sampled archaeal groups, further stressing that their genetic diversity is a function of environment plasticity. For the vast majority of living beings on Earth (i.e. the uncultured microorganisms), how they differ in the genetic or physiological traits used to exploit the environmental resources is largely unknown. Inferring population history from 16S rRNA gene-based molecular phylogenies under an ecological perspective may shed light on the intriguing relationships between lineage, environment, evolution and diversity in the microbial world.

Active Archaeal Communities at Cold Seep Sediments Populated by Siboglinidae Tubeworms from the Storegga Slide

Siboglinid tubeworms in cold seep sediments can locally modify the geochemical gradients of electron acceptors and donors, hence creating potential microhabitats for prokaryotic populations. The archaeal communities associated with sediments populated by Oligobrachia haakonmosbiensis and Sclerolinum contortum Siboglinid tubeworms in the Storegga Slide were examined in this study. Vertical distribution of archaeal communities was investigated using denaturing gradient gel electrophoresis based on 16S rRNA genes. The active fraction of the archaeal community was assessed by using reverse-transcribed rRNA. Archaeal communities associated with sediments colonized by tubeworms were affiliated with uncultivated archaeal lineages of the Crenarchaeota and Euryarchaeota. The composition of the active archaeal populations changed with depth indicating a reorganization of microbial communities. 16S rRNA gene libraries were dominated by sequences affiliated to the Rice Cluster V which are unusual in marine sediment samples. Moreover, this study provides the first evidence of living Crenarchaeota of the Rice Cluster V in cold seep sediments. Furthermore, the Storegga Slide sediments harbored a high diversity of other minor groups of uncultivated lineages including Terrestrial Miscellaneous Euryarchaeotal Group, Marine Benthic Group (MBG)-D, MBG-E, Deep-Sea Hydrothermal Vent Euryarchaeotal Group, Lake Dagow Sediment, Val Kotinen Lake clade III, and Sippenauer Moor 1. Thus, we hypothesize that the vertical geochemical imprint created by the tubeworms could support broad active archaeal populations in the Siboglinidae-populated Storegga Slide sediments.

Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditions

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 57:89-100 (2009) - DOI: https://doi.org/10.3354/ame01331 Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditions Kam W. Tang1,*, Samantha L. Bickel1, Claudia Dziallas2, Hans-Peter Grossart2 1Virginia Institute of Marine Science, 1208 Greate Road, Gloucester Point, Virginia 23062, USA 2Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, 16775 Stechlin, Germany *Email: kamtang@vims.edu ABSTRACT: Cladoceran and copepod carcasses in both marine and freshwater environments represent concentrated reservoirs of organic substrates for water column bacteria. We studied the microbial abundance, activities, and diversity associated with decomposing carcasses of different zooplankton species over short and long time scales, and in oligotrophic vs. eutrophic environments. Fresh carcasses of Daphnia cucullata, Diaphanosoma brachyurum, and Eudiaptomus gracilis were rapidly colonized by bacteria, which reached peak abundances within 1.5 d at 20°C and then decreased. Cell-specific exoenzymatic activity on protein and lipid analogs and production rate of bacteria associated with the carcasses were all higher than in the ambient water. ANOSIM analyses of DGGE banding patterns revealed that bacterial communities associated with both cladoceran and copepod carcasses rapidly diverged from the initial bacterial community in the ambient water. The high similarity of bacteria on both types of carcasses indicates that the carcasses were decomposed by similar bacterial groups. Estimated carcass decomposition rate was lower at 6°C, with an estimated Q10 of 2.4. Carcasses suspended in the eutrophic Lake Dagow had a higher average carbon loss rate than those suspended in the oligotrophic Lake Stechlin. Cladoceran carcasses were initially colonized by bacteria faster than copepod carcasses in both laboratory and field experiments, suggesting that cladoceran carcasses were more prone to exploitation by bacteria, yet copepod carcasses lost carbon at higher rates. Overall, our results suggest that pelagic zooplankton production can be directly converted to water column bacterial production via carcass decomposition, especially during the mid-summer zooplankton decline commonly observed in lakes. KEY WORDS: Decomposition · Exoenzymes · Bacterial production · Bacterial community composition · Zooplankton carcasses Full text in pdf format PreviousNextCite this article as: Tang KW, Bickel SL, Dziallas C, Grossart HP (2009) Microbial activities accompanying decomposition of cladoceran and copepod carcasses under different environmental conditions. Aquat Microb Ecol 57:89-100. https://doi.org/10.3354/ame01331 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 57, No. 1. Online publication date: September 18, 2009 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2009 Inter-Research.

Use of aniline blue to distinguish live and dead crustacean zooplankton composition in freshwaters

Summary1. Traditional zooplankton sampling methods do not account for the presence of zooplankton carcasses, which could lead to a biased understanding of the ecological role of zooplankton.2. The aniline blue staining method for the differentiation between live and dead freshwater crustacean zooplankton was adapted for field application and the accuracy of the new protocol was tested in the laboratory. Detailed descriptions of the characteristic staining patterns of individuals are provided. The adapted staining method was subsequently applied in a field study to assess the live–dead zooplankton composition in the oligotrophic Lake Stechlin and the eutrophic Lake Dagow in Germany.3. The modified aniline blue staining method accurately identified percentages of mixed live and dead crustacean zooplankton, making it suitable for quantifying live–dead compositions of copepods and cladocerans in freshwater samples.4. On average 6% and 8% of the zooplankton were identified as dead in Lake Stechlin and Lake Dagow, respectively. Within each lake there were no significant spatial variations in the horizontal or vertical distribution of zooplankton carcasses. Nor did the percentage of dead zooplankton differ between day and night.5. The aniline blue staining method provides an effective, simple and economical means for more systematic study of the occurrence and fate of crustacean zooplankton carcasses in freshwaters.

Characterization of stable isotope fractionation during methane production in the sediment of a eutrophic lake, Lake Dagow, Germany

We measured δ13C of CO2, CH4, and acetate‐methyl in profundal sediment of eutrophic Lake Dagow by incubation experiments in the presence and absence of methanogenic inhibitors chloroform, bromoethane sulfonate (BES), and methyl fluoride, which have different specificities. Methyl fluoride predominantly inhibits acetoclastic methanogenesis and affects hydrogenotrophic methanogenesis relatively little. Optimization of methyl fluoride concentrations resulted in complete inhibition of acetoclastic methanogenesis. Methane was then exclusively produced by hydrogenotrophic methanogenesis and thus allowed determination of the fractionation factors specific for this methanogenic pathway. Acetate, which was then no longer consumed, accumulated and allowed determination of the isotopic signatures of the fermentatively produced acetate. BES and chloroform also inhibited CH4 production and resulted in accumulation of acetate. The fractionation factor for hydrogenotrophic methanogenesis exhibited variability, e.g., it changed with sediment depth. The δ13C of the methyl group of the accumulated acetate was similar to the δ13C of sedimentary organic carbon, while that of the carboxyl group was by about 12% higher. However, the δ13C of the acetate was by about 5% lower in samples with uninhibited compared with inhibited acetoclastic methanogenesis, indicating unusual isotopic fractionation. The isotope data were used for calculation of the relative contribution of hydrogenotrophic vs. acetoclastic methanogenesis to total CH4 production. Contribution of hydrogenotrophic methanogenesis increased with sediment depth from about 35% to 60%, indicating that organic matter was only partially oxidized in deeper sediment layers.

Vertical structure of archaeal communities and the distribution of ammonia monooxygenase A gene variants in two meromictic High Arctic lakes

The distribution of archaeal amoA and 16S rRNA genes was evaluated in two marine-derived, meromictic lakes in the Canadian High Arctic: Lake A and Lake C1 on the northern coast of Ellesmere Island. The amoA gene was recorded in both lakes, with highest copy numbers in the oxycline. Sequence analysis showed that amoA from the two lakes shared 94% similarity, indicating at least two phylogenetically distinct clusters. Clone libraries of archaeal 16S rRNA genes from Lake A revealed strong vertical differences in archaeal community diversity and composition down the water column. The oxic layer was dominated by one group of Euryarchaeota affiliated to the Lake Dagow Sediment (LDS) cluster. This group was absent from the oxycline, which had an extremely low archaeal diversity of two phylotypes. Both belonged to the Crenarchaeota Marine Group I (MGI), the marine group that has been linked to archaeal amoA; however, there was a low ratio of amoA to MGI copy numbers, suggesting that many MGI Archaea did not carry the amoA gene. The anoxic zone contained representatives of the RC-V (Rice Cluster-V) and LDS clusters of Euryarchaeota. These results show the strong vertical differentiation of archaeal communities in polar meromictic lakes, and they suggest archaeal nitrification within the oxycline of these highly stratified waters.

Bacterial diversity associated with freshwater zooplankton

Bacterial community compositions (BCC) associated with the cladoceran Bosmina coregoni and the cyclopoid copepod Thermocyclops oithonoides in oligotrophic Lake Stechlin versus eutrophic Lake Dagow (northeastern Germany) were compared using molecular techniques. We also transplanted the zooplankton from their native lake to the other lake, and studied changes in their associated BCC as a result of the modified ambient environment. Bacterial community composition associated with B. coregoni was quite conservative between the oligotrophic and eutrophic lakes, and most of the bacteria belonged to Alpha- and Betaproteobacteria. In contrast, BCC associated with T. oithonoides was highly variable and dependent on the environment, and Betaproteobacteria and Bacteroidetes were the most represented among the bacteria. Thermocyclops oithonoides from the oligotrophic lake was more able to retain its bacteria after being transplanted to the eutrophic lake than vice versa. This suggests that bacteria in oligotrophic water were more firmly attached to the copepod and better in resisting environmental fluctuations than those in eutrophic water.

Diffusive fluxes of CH4and CO2across the water-air interface in the eutrophic Lake Dagow, northeast Germany

(2009). Diffusive fluxes of CH4 and CO2 across the water-air interface in the eutrophic Lake Dagow, northeast Germany. SIL Proceedings, 1922-2010: Vol. 30, No. 6, pp. 874-877.

Microbial community diversity and heterotrophic production in a coastal Arctic ecosystem: A stamukhi lake and its source waters

Stamukhi lakes are vast but little‐explored Arctic ecosystems. They occur throughout winter, spring, and early summer near large river inflows along the Arctic coastline, and are the result of freshwater retention behind the thick barrier of rubble ice (stamukhi) that forms at the outer limit of land‐fast sea ice. We examined the molecular biodiversity within all three microbial domains (Bacteria, Archaea, and Eukaryota) and the heterotrophic productivity in Lake Mackenzie, a stamukhi lake in the western Canadian Arctic, and made comparative measurements in the freshwater (Mackenzie River) and marine (Beaufort Sea) source waters. Bacterial and eukaryotic communities in the stamukhi lake differed in composition and diversity from both marine and riverine environments, whereas the archaeal communities were similar in the lake and river. Bacteria 16S ribosomal RNA sequences from the lake were mostly within freshwater clusters of Betaproteobacteria and Bacteroidetes and the Archaea were within the Lake Dagow sediment and Rice cluster‐V clusters of Euryarchaeota. The eukaryotes were mainly ciliates from the subclass Choreotrichia, and there was a notable lack of flagellates. Heterotrophic production rates in the lake were lower than in the river and more similar to those in the sea, despite much higher bacterial concentrations than in either. The lake samples had markedly higher ratios of 3H leucine to 3H thymidine incorporation than in the river and sea, implying some physiological stress. Lake Mackenzie is an active microbial ecosystem with distinct physical and microbiological properties. This circumpolar ecosystem type, vulnerable to the ongoing effects of climate change, likely plays a key functional role in processing riverine inputs to the Arctic Ocean.

Effects of temperature on the diversity and community structure of known methanogenic groups and other archaea in high Arctic peat

Archaeal populations are abundant in cold and temperate environments, but little is known about their potential response to climate change-induced temperature changes. The effects of temperature on archaeal communities in unamended slurries of weakly acidic peat from Spitsbergen were studied using a combination of fluorescent in situ hybridization (FISH), 16S rRNA gene clone libraries and denaturing gradient gel electrophoresis (DGGE). A high relative abundance of active archaeal cells (11-12% of total count) was seen at low temperatures (1 and 5 degrees C), and this community was dominated by Group 1.3b Crenarchaeota and the euryarchaeal clusters rice cluster V (RC-V), and Lake Dagow sediment (LDS). Increasing temperature reduced the diversity and relative abundance of these clusters. The methanogenic community in the slurries was diverse and included representatives of Methanomicrobiales, Methanobacterium, Methanosarcina and Methanosaeta. The overall relative abundance and diversity of the methanogenic archaea increased with increasing temperature, in accordance with a strong stimulation of methane production rates. However, DGGE profiling showed that the structure of this community changed with temperature and time. While the relative abundance of some populations was affected directly by temperature, the relative abundance of other populations was controlled by indirect effects or did not respond to temperature.

Microbial abundance, composition and enzymatic activity during decomposition of copepod carcasses

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 45:219-227 (2006) - doi:10.3354/ame045219 Microbial abundance, composition and enzymatic activity during decomposition of copepod carcasses Kam W. Tang1,*, Kristine Michelle L. Hutalle2, Hans-Peter Grossart2 1Virginia Institute of Marine Science, 1208 Greate Road, Gloucester Point, Virginia 23062, USA 2Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, 16775 Stechlin, Germany *Email: kamtang@vims.edu ABSTRACT: Literature suggests that zooplankton carcasses are prevalent at times in both freshwater and marine environments, and could be important substrate sources for water column microbes (Dubovskaya et al. 2003, Hydrobiologia 504:223–227; Tang et al. 2006b, Estuar Coast Shelf Sci 68:499–508). We conducted laboratory experiments to investigate the decomposition of copepod carcasses by ambient microbes from Lake Dagow, Germany. Bacteria rapidly colonized and decomposed the carcasses, mainly from the inside. The ambient bacterial abundance increased 2-fold or more at the peak of decomposition, but decreased afterward, presumably due to protozoan grazing. Initial increase in ambient bacteria was faster at 20°C than at 6°C; however, this did not differ between aerobic and anaerobic conditions at 20°C, suggesting that pelagic bacteria in Lake Dagow were equally adapted to both aerobic and anaerobic conditions. When bacteria were suppressed by antibiotics, the carcasses were colonized and decomposed by a massive amount of fungi; much of the fungal mass remained attached to the outside of the carcasses. DGGE analyses showed that bacterial and fungal communities of the decomposing carcasses were very different from those of natural copepod samples, indicating a shift in the microbial community at the onset of decomposition. The bacterial composition remained relatively stable, whereas the fungal composition varied greatly over time and between treatments. The ambient protease activity increased with bacterial abundance, and was at most 4 to 18 times higher than in the control (lake water). Except for the antibiotics treatment, re-suspension of carcasses in the water increased the measured protease activity by as much as 4- to 7-fold, indicating that protease activity was highly localized within the decomposing carcasses. Our study shows that copepod carcasses support high bacterial growth and enzymatic activities. Colonization and decomposition of the carcasses by fungi point to a previously unknown ecological role for aquatic fungi that deserves further investigation. KEY WORDS: Detritus · Copepod carcasses · Decomposition · Microbial hotspots · Protease activity · Fungi Full text in pdf format PreviousNextExport citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 45, No. 3. Online publication date: December 21, 2006 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2006 Inter-Research.

Vertical distribution of structure and function of the methanogenic archaeal community in Lake Dagow sediment

Detailed studies on the relation of structure and function of microbial communities in a sediment depth profile scarcely exist. We determined as functional aspect the vertical distribution of the acetotrophic and hydrogenotrophic CH4 production activity by measuring production rates and stable 13C/12C-isotopic signatures of CH4 in the profundal sediment of Lake Dagow. The structural aspect was determined by the composition of the methanogenic community by quantifying the abundance of different archaeal groups using 'real-time' polymerase chain reaction and analysis of terminal restriction fragment length polymorphism (T-RFLP). Methane production rates in the surface sediment (0-3 cm depth) were higher in August than in May, but strongly decreased with depth (down to 20 cm). The delta13C of the produced CH4 and CO2 indicated an increase in isotopic fractionation with sediment depth. The relative contribution of hydrogenotrophic to total methanogenesis, which was calculated from the isotopic signatures, increased with depth from about 22% to 38%. Total numbers of microorganisms were higher in August than in May, but strongly decreased with depth. The increase of microorganisms from May to August mainly resulted from Bacteria. The Archaea, on the other hand, exhibited a rather constant abundance, but also decreased with depth from about 1 x 10(8) copies of the archaeal 16S rRNA gene per gram of dry sediment at the surface to 4 x 10(7) copies per gram at 15-20 cm depth. T-RFLP analysis combined with phylogenetic analysis of cloned sequences of the archaeal 16S rRNA genes showed that the methanogenic community consisted mainly of Methanomicrobiales and Methanosaetaceae. The relative abundance of Methanosaetaceae decreased with depth, whereas that of Methanomicrobiales slightly increased. Hence, the vertical distribution of the functional characteristics (CH4 production from acetate versus H2/CO2) was reflected in the structure of the community consisting of acetotrophic (Methanosaetaceae) versus hydrogenotrophic (Methanomicrobiales) phenotypes.

Methanogenic Pathway and Archaeal Community Structure in the Sediment of Eutrophic Lake Dagow: Effect of Temperature

Methanogenic degradation of organic matter is an important microbial process in lake sediments. Temperature may affect not only the rate but also the pathway of CH4 production by changing the activity and the abundance of individual microorganisms. Therefore, we studied the function and structure of a methanogenic community in anoxic sediment of Lake Dagow, a eutrophic lake in north-eastern Germany. Incubation of sediment samples (in situ 7.5 degrees C) at increasing temperatures (4, 10, 15, 25, 30 degrees C) resulted in increasing production rates of CH4 and CO2 and in increasing steady-state concentrations of H2. Thermodynamic conditions for H2/CO2 -dependent methanogenesis were only exergonic at 25 and 30 degrees C. Inhibition of methanogenesis with chloroform resulted in the accumulation of methanogenic precursors, i.e., acetate, propionate, and isobutyrate. Mass balance calculations indicated that less CH4 was formed via H2 at 4 degrees C than at 30 degrees C. Conversion of 14CO2 to 14CH4 also showed that H2/CO2 -dependent methanogenesis contributed less to total CH4 production at 4 degrees C than at 30 degrees C. [2-14 C]Acetate turnover rates at 4 degrees C accounted for a higher percentage of total CH4 production than at 30 degrees C. Collectively, these results showed a higher contribution of H2-dependent methanogenesis and a lower contribution of acetate-dependent methanogenesis at high versus low temperature. The archaeal community was characterized by cloning, sequencing, and phylogenetic analysis of the 16S rRNA genes retrieved from the sediment. Sequences were affiliated with Methanosaetaceae, Methanomicrobiaceae, and three deeply branching euryarchaeotal clusters, i.e., group III, Rice cluster V, and a novel euryarchaeotal cluster, the LDS cluster. Terminal restriction fragment length polymorphism (T-RFLP) analysis showed that 16S rRNA genes affiliated to Methanosaetaceae (20-30%), Methanomicrobiaceae (35-55%), and group III (10-25%) contributed most to the archaeal community. Incubation of the sediment at different temperatures (4-30 degrees C) did not result in a systematic change of the archaeal community composition, indicating that change of temperature primarily affected the activity rather than the structure of the methanogenic community.

Characterization and in situ carbon metabolism of phototrophic consortia.

A dense population of the phototrophic consortium "Pelochromatium roseum" was investigated in the chemocline of a temperate holomictic lake (Lake Dagow, Brandenburg, Germany). Fluorescence in situ hybridization revealed that the brown epibionts of "P. roseum" constituted up to 37% of the total bacterial cell number and up to 88% of all green sulfur bacteria present in the chemocline. Specific amplification of 16S rRNA gene fragments of green sulfur bacteria and denaturing gradient gel electrophoresis fingerprinting yielded a maximum of four different DNA bands depending on the year of study, indicating that the diversity of green sulfur bacteria was low. The 465-bp 16S rRNA gene sequence of the epibiont of "P. roseum" was obtained after sorting of individual consortia by micromanipulation, followed by a highly sensitive PCR. The sequence obtained represents a new phylotype within the radiation of green sulfur bacteria. Maximum light-dependent H(14)CO(3)(-) fixation in the chemocline in the presence of 3-(3,4-dichlorophenyl)-1,1-dimethylurea suggested that there was anaerobic autotrophic growth of the green sulfur bacteria. The metabolism of the epibionts was further studied by determining stable carbon isotope ratios (delta(13)C) of their specific biomarkers. Analysis of photosynthetic pigments by high-performance liquid chromatography revealed the presence of high concentrations of bacteriochlorophyll (BChl) e and smaller amounts of BChl a and d and chlorophyll a in the chemocline. Unexpectedly, isorenieratene and beta-isorenieratene, carotenoids typical of other brown members of the green sulfur bacteria, were absent. Instead, four different esterifying alcohols of BChl e were isolated as biomarkers of green sulfur bacterial epibionts, and their delta(13)C values were determined. Farnesol, tetradecanol, hexadecanol, and hexadecenol all were significantly enriched in (13)C compared to bulk dissolved and particulate organic carbon and compared to the biomarkers of purple sulfur bacteria. The difference between the delta(13)C values of farnesol, the major esterifying alcohol of BChl e, and CO(2) was -7.1%, which provides clear evidence that the mode of growth of the green sulfur bacterial epibionts of "P. roseum" in situ is photoautotrophic.

Seasonal Development and Morphological Variability of Cyclotella ocellata (Bacillariophyceae) in the Eutrophic Lake Dagow (Germany)

AbstractThe development of Cyclotella ocellata Pantocsek was studied systematically in the eutrophic, dimictic hardwater Lake Dagow from March to October, 1994. Cyclotella ocellata was the most important centric diatom in the lake with a maximum cell density of 6 × 106 cells 1−1. The seasonal development, characterized by a spring and a summer maximum, is considered in relation to environmental factors and the succession of the phytoplankton community. The amount of Cyclotella ocellata biomass as a proportion of the total phytoplankton biomass varied from 0.5 to 35%. In addition, seasonal changes in cell size and feature associated with sexual reproduction of Cyclotella ocellata were documented. Light and electron microscopic investigations demonstrate an extremely wide range of morphological variability of this natural population.