Laboratory Microcosm Experiments Research Articles

The effects of roots and earthworms on aggregate size distribution and their associated carbon under contrasting soil types and soil moisture conditions

Soil’s potential as a carbon sink is uncertain due to biotic and abiotic interactions. Soil aggregates are important carriers of organic carbon (OC), and clarifying the response of aggregates and their associated OC to plant roots and earthworms can better understand the carbon cycle in terrestrial ecosystems. Herein, we determined the regulatory role of plant roots (Lolium perenne) and earthworms (Metaphire tschiliensis) in isolation and in combination on aggregate size distribution and their associated OC and readily oxidizable OC (ROOC) under contrasting soil types (Phaeozems and Anthrosols) and soil moisture conditions (constant wetting, CW; wetting–drying cycle repeated four times, 4WD) by a laboratory microcosm experiment. Results showed that earthworm presence significantly increased plant biomass by 30 % and 221 % in Phaeozems and Anthrosols, respectively (p < 0.05). For Phaeozems, plant alone (P) and plant and earthworm in combination (PE) had lower proportion of large aggregate (5–8 and 2–5 mm) than bare soil (CK) under 4WD condition (p < 0.05). For Anthrosols, the PE treatment decreased the proportion of 5–8 and 2–5 mm aggregate by 45 % and 25 %, respectively, under CW condition, and decreased the proportion of 5–8 mm aggregate by 37 % under 4WD condition (p < 0.05). Moreover, the proportion of 5–8 and 2–5 mm aggregate in P treatment was lower under CW condition (6.92 % and 22.13 %) but was higher under 4WD condition (11.49 % and 32.55 %) than those in CK (14.69 % and 29.91 %; 8.85 % and 20.56 %) (p < 0.05). Our results further indicated that the PE treatment had relatively higher OC and ROOC contents, especially for small aggregates in Anthrosols. The study indicates that plant roots and earthworms significantly influence aggregate turnover and the carbon cycle, with soil type and moisture playing a crucial role.

Dynamic population modeling of bacterioplankton community response to gelatinous marine zooplankton bloom collapse and its impact on marine nutrient balance

The diverse microbial community in the ocean, encompassing various metabolic types, interacts with the wide array of compounds in the dissolved organic matter (DOM) pool, thereby influencing the ocean’s biogeochemical state and, consequently, the global climate. Our understanding of the interactions between specific DOM constituents and microbial consortia remains limited, necessitating further refinement to achieve a mechanistic comprehension of the relationship between the DOM field and the microbial metabolic network. Attaining this level of understanding is crucial for accurately predicting the marine ecosystem’s response to natural and anthropogenic perturbations. To address this gap, we developed a bacterial population model based on the von Foerster equation. This model aims to describe the complex microbial-mediated degradation of gelatinous zooplankton (hereinafter ‘jellyfish’) detritus, as an important, but largely overlooked source of DOM in the ocean. By considering microbial growth and decay, as well as DOM uptake, and nutrient release, the model is able to describe the microbial community’s life cycle, and the biochemical transformations of the jellyfish-derived organic matter. We fitted the model to results of laboratory microcosm experiments conducted to simulate scenarios experienced by ambient microbiomes during decay of two different jellyfish species in the northern Adriatic Sea. By interpreting the fitted parameters, we highlight the differences in the microbial response to different jellyfish species, namely how these affect the microbial community composition and the release of nutrients. This model has been specifically designed for integration with ocean circulation models to create a comprehensive physical-biogeochemical ocean model. Such an extended model can be utilized for multi-scale simulations to assess the system’s response to jellyfish and jellyfish-derived organic matter. Given that jellyfish blooms may become more prevalent under future ocean scenarios, this modeling approach is essential for understanding their potential impact on marine ecosystems.

Effect of a generalist mesopredator on modular and unitary sessile prey associated with a foundation species.

Unitary and modular sessile organisms both dominate in marine benthic communities, commonly preyed upon by the same generalist predators. The differences between unitary and modular defensive strategies may underlie the ways generalist predators control community structure, but this has never been empirically examined. We hypothesize that the individual size of an omnivorous mesopredatory shrimp affects the relative vulnerability of unitary and modular prey and hence translates into community structure. In a short-term laboratory microcosm experiment, we assessed the effect of the shrimp individual size on an epibiotic assemblage of red algae blades initially dominated by three species of modular bryozoans and a unitary serpulid tubeworm. We found that the individual size of a shrimp determines its effect on the prey community composition. Large shrimp stronger than small shrimp increased the proportion of unitary tubeworms among the epibionts surviving predation. While large shrimp reduced the proportions of all the three dominant bryozoan species, small shrimp, in contrast, mostly increased the proportion of a bryozoan species with the smallest modules and largest colonies. This bryozoan, like the tubeworms, demonstrated a higher survival rate with larger individual (colony) size. Yet, against large shrimp this bryozoan was outperformed by the largest tubeworms almost immune to predation. Partial predation by small shrimp modestly improved survival of the largest bryozoan colonies. Thus, relative vulnerability of unitary and modular prey is determined by the predator individual size. Our findings clarify the complex way the size structures of generalist consumers and their prey shape communities by affecting the species-specific relative performance of modular and unitary organisms. The demography of a foundation species and the competitive hierarchy can have additional effects by altering the balance of predation and competition.

Effects of biodegradable poly(butylene adipate‐co‐terephthalate) and poly(lactic acid) plastic degradation on soil ecosystems

AbstractDespite that biodegradable plastics are perceived as environmentally friendly, there is a lack of comprehensive understanding of their fate in soil. Current Environmental, Social, and Governance (ESG) frameworks, along with new UNEP regulations on plastic pollution, necessitate scientific information on plastic degradation in soils for developing sustainable biodegradable plastics. In this study, we examined the degradation rates of two biodegradable plastics, poly(butylene adipate‐co‐terephthalate) (PBAT) and poly(lactic acid) (PLA), in a laboratory microcosm experiment using uncontaminated soil, with PBAT or PLA added at 8.3% (w/w). Our aim was to further understand the impact of these plastic types on soil properties and microbial communities under different incubation temperatures. Both PBAT and PLA treatments elevated cumulative CO2 efflux compared with the control soil incubated at 25 and 58°C. After 33 weeks, 9.2% and 6.1% of the added PBAT and PLA degraded, respectively, at 58°C, while only 2.3% of PBAT and 1.7% of PLA degraded at 25°C, implying slower degradation rates of PBAT and PLA under the lower temperature. Degradation at 58°C increased total soil carbon by 0.6%, 1.9%, and 4.3% for Control, PBAT, and PLA, respectively, and soil electrical conductivity by 0.17, 0.33, and 2.38 dS m−1, respectively, but decreased soil pH. Microbial diversity and richness decreased under thermophilic conditions at 58°C compared with that at 25°C. We conclude that the degradation of PBAT and PLA varies with environmental condition, and influences soil properties.

Urea Fertilization Significantly Promotes Nitrous Oxide Emissions from Agricultural Soils and Is Attributed to the Short-Term Suppression of Nitrite-Oxidizing Bacteria during Urea Hydrolysis.

The application of urea in agricultural soil significantly boosts nitrous oxide (N2O) emissions. However, the reason for nitrite accumulation, the period of nitrite-oxidizing bacteria (NOB) suppression, and the main NOB species for nitrite removal behind urea fertilization have not been thoroughly investigated. In this study, four laboratory microcosm experiments were conducted to simulate urea fertilization in agricultural soils. We found that within 36 h of urea application, nitrite oxidation lagged behind ammonia oxidation, leading to nitrite accumulation and increased N2O emissions. However, after 36 h, NOB activity recovered and then removed nitrite, leading to reduced N2O emissions. Urea use resulted in an N2O emission rate tenfold higher than ammonium. During incubation, Nitrobacter-affiliated NOB growth decreased initially but increased later with urea use, while Nitrospira-affiliated NOB appeared unaffected. Chlorate suppression of NOB lasted longer, increasing N2O emissions. Urease inhibitors effectively reduced N2O emissions by slowing urea hydrolysis and limiting free ammonia production, preventing short-term NOB suppression. In summary, short-term NOB suppression during urea hydrolysis played a crucial role in increasing N2O emissions from agricultural soils. These findings revealed the reasons behind the surge in N2O emissions caused by extensive urea application and provided guidance for reducing N2O emissions in agricultural production processes.

Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland.

Seawater intrusion into freshwater wetlands causes changes in microbial communities and biogeochemistry, but the exact mechanisms driving these changes remain unclear. Here we use a manipulative laboratory microcosm experiment, combined with DNA sequencing and biogeochemical measurements, to tease apart the effects of sulfate from other seawater ions. We examined changes in microbial taxonomy and function as well as emissions of carbon dioxide, methane, and nitrous oxide in response to changes in ion concentrations. Greenhouse gas emissions and microbial richness and composition were altered by artificial seawater regardless of whether sulfate was present, whereas sulfate alone did not alter emissions or communities. Surprisingly, addition of sulfate alone did not lead to increases in the abundance of sulfate reducing bacteria or sulfur cycling genes. Similarly, genes involved in carbon, nitrogen, and phosphorus cycling responded more strongly to artificial seawater than to sulfate. These results suggest that other ions present in seawater, not sulfate, drive ecological and biogeochemical responses to seawater intrusion and may be drivers of increased methane emissions in soils that received artificial seawater addition. A better understanding of how the different components of salt water alter microbial community composition and function is necessary to forecast the consequences of coastal wetland salinization.

Soil health improvement by inoculation of indigenous microalgae in saline soil.

Using biological methods to improve saline soils is recognized as an eco-friendly and sustainable way. In this study, two indigenous algae YJ-1 and YJ-2 screened from salinized farmland were inoculated into saline soils with different salinization levels to investigate their potential in enhancing soil health by laboratory microcosm experiment. The results showed that individual inoculation of the two algae quickly resulted in the formation of algal crusts, and the chlorophyll content in the saline soils gradually increased with the incubation time. The soil pH decreased significantly from the initial 8.15-9.45 to 6.97-7.56 after 60-day incubation. The exopolysaccharides secretion and the activities of catalase, sucrase, and urease in saline soils also increased. Microalgal inoculation increased soil organic matter storage, while decreasing the available nutrient contents possibly due to the depletion of microalgal growth. PCA and PCC results identified that microalgal biomass as the predominant variable affecting soil quality. Overall, these data revealed the great potential of microalgae in the amelioration of saline soils, especially in pH reduction and enzyme activity enhancement. This study will provide the theoretical foundation for improving saline soils via algalization.

Efficacy of grape seed procyanidins for inhibiting denitrification varies by source, soil texture, and cropping history

Plant-derived denitrification inhibitors, such as procyanidins derived from grape seed extract (GSE), hold potential in mitigating nitrous oxide (N2O) emissions, a potent greenhouse gas and stratospheric ozone depleter. A deeper understanding of the effects of GSE – considering aspects like rate, source, application timing, storage, and interactions with soil properties and cropping histories – on denitrification inhibition remains elusive. We conducted a series of laboratory microcosm experiments to assess these effects using denitrification enzyme activity (DEA) and measurements of N2O and carbon dioxide (CO2) production rates under both anaerobic and aerobic conditions, soil inorganic nitrogen (N), and other major soil properties. Our results revealed that one commercial GSE brand (USP GSE) inhibited DEA, while another source was ineffective. Two non-procyanidin compounds in commercial GSE mixtures, tartaric acid and gallic acid, actually enhanced DEA. Inhibition efficiency of the USP GSE varied significantly across soils with differing crop histories and physical properties, exhibiting a positive dose-response in three out of the five soils examined. Greater efficiency was observed in sandy soils compared to silt loam soils and in soils with a history of continuous corn production as opposed to soybean. The GSE application timing relative to urea addition and a one-week room temperature storage had minor effects on denitrification inhibition. In corn-cultivated soil, co-application of GSE and urea reduced cumulative N2O production by 27 % compared to soils treated with urea alone. The CO2 production and nitrate levels remained largely unaffected by GSE application. These findings supported the potential of GSE as a soil amendment to reduce N2O emissions in corn-cultivated soils. However, challenges including purity of procyanidins, cost-effectiveness, and inconsistent performance under various systems warrant consideration for broader field applications.

Epidemics in native species influence the outcome of a species invasion.

Invasive species can have large effects on native communities. When native and invasive species share parasites, an epidemic in a native species could facilitate or inhibit the invasion. We sought to understand how the incidence and timing of epidemics in native species caused by a generalist parasite influenced the success and impact of an invasive species. We focused on North American native and invasive species of zooplankton (Daphnia dentifera and Daphnia lumholtzi, respectively), that can both become infected with a fungal parasite (Metschnikowia bicuspidata). In a laboratory microcosm experiment, we exposed the native species to varying parasite inocula (none, low, high) and two invasive species introduction times (before or during an epidemic in the native species). We found that the invasive species density in treatments with the parasite was higher compared to uninfected treatments, though only the earlyinvasion, low-parasite and uninfected treatments exhibitedsignificantpairwisedifferences.However, invasive resting eggs were only found in the uninfected treatments. The density of the native species was lowest with a combination of the parasite present, and the invasive species introduced during the epidemic. Native infection prevalence in these treatments (late invasion, parasite present) was also higher than prevalence in treatments where the invasive species was introduced before the epidemic. Therefore, the timing of an invasion relative to an epidemic can affect both the native and invasive species. Our results suggest that the occurrence and timing of epidemics in native species can influence the impacts of a species invasion.

Microdialysis fluxes of inorganic nitrogen differ from extractable nitrogen by minimising disturbance of mineral-associated sources

Measuring soil nitrogen (N) provides important information for ecosystem productivity and improving N use efficiency in agricultural systems. Conventional means of sampling N using soil extractions disturb soil structure and function, and likely distort accurate quantification. In situ microdialysis is a novel sampling method that generates differing N profiles compared to soil extractions. Here we test the hypothesis that differences observed between sampling methods are due to the minimal disturbance and sampling of a mobile N fraction when using microdialysis, with discernible patterns expected across soils with distinct clay and organic matter contents. In a short-term laboratory microcosm experiment with 21 sugarcane cropping soils, we compared salt (potassium chloride; KCl) or aqueous (H2O) extractants and microdialysis. KCl-extractable ammonium (NH4+) was highly correlated with the content of clay, total N and carbon, indicative of bound N being solubilised. In contrast, NH4+ contributed significantly less to microdialysis fluxes and was not correlated with the measured soil properties, which we attribute to minimal disturbance of bound N·H2O extracts sampled proportionally more NH4+ than microdialysis but were significantly correlated with fluxes. This suggests that while microdialysis and H2O extraction sample from a dissolved N pool, H2O extracts sample from an additional pool of loosely-bound NH4+. Nitrate (NO3−) measures were correlated between methods, but shared no relationship with the measured soil properties, indicating that NO3− sampling is less affected by the disturbance introduced by extractions. We conclude that sampling inorganic N is biased by the degree to which soil sampling methods disturb adsorbed N sources with implications for interpreting soil N measurements.

Attenuation of acid rock drainage by stimulating sulfur-reducing bacteria

Iron-sulfide minerals found in shale formations are stable under anaerobic conditions. However, in the presence of oxygen and water, acid-loving chemolithotrophic bacteria can transform the iron-sulfide minerals into a toxic solution of sulfuric acid and dissolved iron and minerals known as acid rock drainage (ARD). The objective of this study was to disrupt chemolithotrophic bacteria responsible for ARD using chemical treatments and to foster an environment favorable for competing microorganisms to attenuate the biologically induced ARD. Chemical treatments were injected into flow-through microcosms consisting of 501 g of pyrite-rich shale pieces inoculated with ARD bacteria. Three treatments were tested in the microcosms: (1) a sodium hydroxide-bleach mix, (2) a sodium lactate solution, and (3) a sodium lactate-soy infant formula mix. The effectiveness of the treatments was assessed by monitoring pH, dissolved iron, and other geochemical constituents in the discharge waters. The optimal treatment was a sequential injection of 1.5 g sodium hydroxide, followed by 0.75 g lactate and 1.5 g soy formula dissolved in 20 mL water. The pH of the discharge water rose to 6.0 within 10 days, dissolved iron concentrations dropped below 1 mg/L, the median alkalinity increased to 98 mg/L CaCO3, and sulfur-reducing and slime-producing bacteria populations were stimulated. The ARD attenuating benefits of this treatment were still evident after 231 days. Other treatments provided a number of ARD attenuating effects but were tempered by problems such as high phosphate concentrations, short longevity, or other shortcomings. The results of these laboratory microcosm experiments were promising for the attenuation of ARD. Additional investigations and careful selection of treatment methods will be needed for field application.

Soil microbial legacies influence freeze–thaw responses of soil

Abstract Warmer winters with less snowfall are increasing the frequency of soil freeze–thaw cycles across temperate regions. Soil microbial responses to freeze–thaw cycles vary and some of this variation may be explained by microbial conditioning to prior winter conditions, yet such linkages remain largely unexplored. We investigated how differences in temperature history influenced microbial community composition and activity in response to freeze–thaw cycles. We collected soil microbial communities that developed under colder (high elevation) and warmer (low elevation) temperature regimes in spruce‐fir forests, then added each of these soil microbial communities to a sterile bulk‐soil in a laboratory microcosm experiment. The inoculated high‐elevation cold and low‐elevation warm microcosms were subjected to diurnal freeze–thaw cycles or constant above‐freezing temperature for 9 days. Then, all microcosms were subjected to a 7‐day above‐freezing recovery period. Overall, we found that the high‐elevation cold community had, relative to the low‐elevation warm community, a smaller reduction in microbial respiration (CO2 flux) during freeze–thaw cycles. Further, the high‐elevation cold community, on average, experienced lower freeze–thaw‐induced bacterial mortality than the warm community and may have partly acclimated to freeze–thaw cycles via increased lipid membrane fluidity. Respiration of both microbial communities quickly recovered following the end of the freeze–thaw treatment period and there were no changes in soil extractable carbon or nitrogen. Our results provide evidence that past soil temperature conditions may influence the responses of soil microbial communities to freeze–thaw cycles. The microbial community that developed under a colder temperature regime was more tolerant of freeze–thaw cycles than the community that developed under a warmer temperature regime, although both communities displayed some level of resilience. Taken together, our data suggest that microbial communities conditioned to less extreme winter soil temperatures may be most vulnerable to rapid changes in freeze–thaw regimes as winters warm, but they also may be able to quickly recover if mortality is low. Read the free Plain Language Summary for this article on the Journal blog.

Removal of ammonia nitrogen from black and odorous water by macrophytes based on laboratory microcosm experiments.

In recent years, the removal mechanism of ammonia nitrogen in black and odorous water (BOW), especially in the process of phytoremediation, has been a research "hotspot". Here, the migration process of ammonia nitrogen in macrophytes (Acorus calamus, Canna indica and Eichhornia crassipes) was detected by Fourier transform infrared (FT-IR) spectroscopy. Experiments revealed that the concentration of ammonia nitrogen (NH4 +-N) was reduced significantly. Maximum reduction in the NH4 +-N concentration was obtained in 75% BOW: the absorption of NH4 +-N was >90% in A. calamus and C. indica, and >80% in E. crassipes. After two 10 days cultivations, in the culture dishes of A. calamus and C. indica, absorption of NH4 +-N was >90% whereas, in the culture dishes of E. crassipes, absorption of NH4 +-N was ∼50% and ∼60%. FT-IR spectroscopy showed that NH4 +-N, NO2 --N and NO3 --N could be absorbed by the root and migrate to the stem and leaf of macrophytes. NH4 +-N and NO2 --N were transformed, and the direction was NH4 +-N → NO2 --N → NO3 --N. The migration rate of NH4 +-N in C. indica was faster because of its regular and smooth capillaries according to scanning electron microscopy. Our study on the removal and transformation mechanism of ammonia nitrogen in BOW could be an important reference for other bodies of water.

Phosphorus adsorption on iron-coated sand under reducing conditions.

Mitigation measures are needed to prevent large loads of phosphate originating in agriculture from reaching surface waters. Iron-coated sand (ICS) is a residual product from drinking water production. It has a high phosphate adsorption capacity and can be placed around tile drains, taking no extra space, which increases the farmers' acceptance. The main concern regarding the use of ICS filters below groundwater level is that limited oxygen supply and high organic matter concentrations may lead to the reduction and dissolution of iron (hydr)oxides present and the release of previously adsorbed phosphate. This study aimed to investigate phosphate adsorption on ICS at the onset of iron reduction. First, we investigated whether simultaneous metal reduction and phosphate adsorption were relevant at two field sites in the Netherlands that use ICS filters around tile drains. Second, the onset of microbially mediated reduction of ICS in drainage water was mimicked in complementary laboratory microcosm experiments by varying the intensity of reduction through controlling the oxygen availability and the concentration of degradable organic matter. After 3 yr, ICS filters in the field removed phosphorus under low redox conditions. Over 45 d, the microbial reduction of manganese and iron oxides did not lead to phosphate release, confirming field observations. Electron microscopy and X-ray absorption spectroscopy did not evince systematic structural or compositional changes; only under strongly reducing conditions did iron sulfides form in small percentages in the outer layer of the iron coating. Our results suggest that detrimental effects only become relevant after long periods of operation.

Mixed-litter effects of fresh leaf semi-decomposed litter and fine root on soil enzyme activity and microbial community in an evergreen broadleaf karst forest in southwest China.

Litter decomposition is the main process that affects nutrient cycling and carbon budgets in mixed forests. However, knowledge of the response of the soil microbial processes to the mixed-litter decomposition of fresh leaf, semi-decomposed leaf and fine root is limited. Thus, a laboratory microcosm experiment was performed to explore the mixed-litter effects of fresh leaf, semi-decomposed leaf and fine root on the soil enzyme activity and microbial community in an evergreen broadleaf karst forest in Southwest China. Fresh leaf litter, semi-decomposed litter and fine root in the Parakmeria nitida and Dayaoshania cotinifolia forests, which are unique protective species and dominant species in the evergreen broadleaf forest, were decomposed alone and in all possible combinations, respectively. Our results showed that the mass loss of fresh leaf litter in three mixed-litter treatment was significantly higher than that in two mixed-litter treatment in the P. nitida and D. cotinifolia forests. Mass loss of fine root in the single litter treatment was significantly lower in the P. nitida forest and higher in the D. cotinifolia forest compared to that in the other litter treatments. There were insignificant differences in the activities of β-glucosidase (BG) and leucine aminopeptidase (LAP) between control and mixed-litter treatment in the P. nitida forest and between control and single litter treatment in the D. cotinifolia forest. The N-acetyl-β-D-glucosaminidase (NAG) activity was significantly increased by the single litter decomposition of fresh leaf and fine root and three mixed-litter decomposition in the P. nitida and D. cotinifolia forests. The activity of acid phospomonoesterase (AP) in the decomposition of fresh leaf litter was lower in the P. nitida forest and higher in the D. cotinifolia forest compared to that in control. The most dominant soil bacteria were Proteobacteria in the P. nitida forest and were Actinobacteria and Proteobacteria in the D. cotinifolia forest. Shannon, Chao1, ACE and PD indexes in the mixed-litter decomposition of fresh leaf and semi-decomposition litter were higher than that in control in P. nitida forest. There were insignificant differences in observed species and indexes of Chao1, ACE and PD between litter treatments in the D. cotinifolia forest. Richness of mixed-litter significantly affected mass loss, soil enzyme activity and microbial diversity in the P. nitida forest. Litter N concentration and the presence of fresh leaf litter were significantly correlated with the mass loss and soil enzyme activity in the P. nitida and D. cotinifolia forests. These results indicated that the presence of fresh leaf litter showed a non-negligible influence on mixed-litter decomposition and soil enzyme activity, which might be partly explained by litter initial quality in the P. nitida and D. cotinifolia forests.

Behaviour drives contemporary evolution in a failing insect-parasitoid importation biological control programme

Biological control of pests continues to become more important in agriculture as pesticides are being withdrawn. However, successful control can be compromised by contemporary evolution. Recent work in New Zealand has shown that the once-successful biological control programme of the sexually reproducing grassland weevil pest Listronotus bonariensis by the asexual parasitoid Microctonus hyperodae has now failed. To explain the mechanisms associated with this, weevil parasitism rates were intensively monitored between 1994 and 2019. Frequent sampling took place at widely dispersed New Zealand sites spanning the warmer northern regions to the cooler south. Based on elapsed heat accumulation above the parasitoid’s development temperature threshold of 10.2°C degree-day (DD), the results over c. 25 years indicated that the extent of parasitism decline at a given location was directly related to the accumulated DD. The latter, in turn, was taken to be indicative of parasitoid activity and selection pressure. Accordingly, laboratory microcosm experiments measuring the response of weevils collected from the North–South distribution to a common population of parasitoids showed that the weevils from the warmer northern region showed higher rates of avoidance of the searching parasitoids than those from the cooler south. This strongly supported the hypothesis that the weevil resistance mechanism is related to levels of parasitoid avoidance behaviour arising from long-term parasitoid selection pressure. This study of the behaviourally based acquisition of resistance to a biological control agent illustrates a general need to consider the potential capability of an exotic target host to develop resistance to imported biological control agents. This includes identifying existing host adaptations that selection pressure could potentially act upon that may compromise otherwise successful biological control programmes. Such a requirement points to the need for long-term monitoring of biological control systems and understanding of parasitoid/host dynamics.

Detangling ecosystem services: Open-field manipulation of soil-dwelling microarthropods provides new opportunities to investigate their effects on nitrogen cycling.

Soil microarthropods have a pivotal role in soil nitrogen cycling in that they affect microbial decomposers. A high abundance of microarthropods may increase the mobility of inorganic nitrogen ions in the soil, mainly in nitrogen‐limited habitats. However, it is difficult to study ecological processes with small‐sized, soil‐dwelling arthropods. The effects of soil microarthropods on nitrogen cycling have mainly been studied in laboratory microcosm experiments. Therefore, we face many practical issues in investigating these effects under field conditions that remain to be resolved.We developed an open‐field mesocosm setup with growing plants. In a two‐part experiment, spring wheat and grass species were grown in chernozem and sandy soils. Leached ammonium and nitrate ions were measured with percolation lysimeters. Half of the mesocosms included natural assemblages, and the other half included less abundant Acari and Collembola assemblages. The application of nitrogen fertilization assured differences in nitrogen sources.We found a large difference in ammonium and nitrate leaching between the two soil types. In chernozem soil, the leached ion concentrations were higher in mesocosms with more abundant mite and springtail assemblages. The expected patterns were less pronounced in sandy soil. Adding nitrogen fertilizer did not modify the effects of soil microarthropods.Open‐field mesocosms are promising for studying the role of soil‐dwelling mesofauna in ecological processes. We solved the problem of keeping mesofauna abundance lower in treated plots than that in control plots. Plants successfully grew in our semi‐closed systems with functioning percolation lysimeters. The use of the equipment in the experiments in this study helped reveal that the role of soil‐dwelling microarthropods in nitrogen cycling depends on the soil type and not on the application of nitrogen fertilizer.

Environmental RNA degrades more rapidly than environmental DNA across a broad range of pH conditions.

Although the use and development of molecular biomonitoring tools based on environmental nucleic acids (eDNA and eRNA; collectively known as eNAs) have gained broad interest for the quantification of biodiversity in natural ecosystems, studies investigating the impact of site-specific physicochemical parameters on eNA-based detection methods (particularly eRNA) remain scarce. Here, we used a controlled laboratory microcosm experiment to comparatively assess the environmental degradation of eDNA and eRNA across an acid-base gradient following complete removal of the progenitor organism (Daphnia pulex). Using water samples collected over a 30-day period, eDNA and eRNA copy numbers were quantified using a droplet digital PCR (ddPCR) assay targeting the mitochondrial cytochrome c oxidase subunit I (COI) gene of D. pulex. We found that eRNA decayed more rapidly than eDNA at all pH conditions tested, with detectability-predicted by an exponential decay model-for up to 57 h (eRNA; neutral pH) and 143 days (eDNA; acidic pH) post organismal removal. Decay rates for eDNA were significantly higher in neutral and alkaline conditions than in acidic conditions, while decay rates for eRNA did not differ significantly among pH levels. Collectively, our findings provide the basis for a predictive framework assessing the persistence and degradation dynamics of eRNA and eDNA across a range of ecologically relevant pH conditions, establish the potential for eRNA to be used in spatially and temporally sensitive biomonitoring studies (as it is detectable across a range of pH levels), and may be used to inform future sampling strategies in aquatic habitats.

Trait relationships of fungal decomposers in response to drought using a dual field and laboratory approach

AbstractDecomposer fungi play a fundamental role in terrestrial ecosystem dynamics. In the southwestern United States, climate change is causing more frequent and severe droughts, which may alter fungal community composition and activity. Investigating relationships between fungal traits may improve the prediction of fungal responses to drought. In this dual field and laboratory experiment, we examine whether trade‐offs occur between traits associated with drought. Specifically, we test the hypothesis that fungi sort into lifestyles specializing in growthyield, resourceacquisition, and droughtstress tolerance (“YAS” framework). For the field experiment, we constructed microbial “cages” containing sterilized litter and 1 of 10 fungal isolates. These cages were placed in long‐term drought and control plots in a southern Californian grassland for 6 and 12 months. We measured fungal hyphal length per unit litter mass loss for growth yield, the potential activities of four extracellular enzymes for resource acquisition, and the ability to grow in the drought versus control plots for drought stress tolerance. We compared these results with a laboratory microcosm experiment constructed with the same fungal isolates and that measured the same fungal traits. The field experiment corroborated our laboratory results, in that no trade‐offs were observed between growth yield and resource acquisition traits. However, in contrast to the laboratory experiment, drought tolerance was negatively related to extracellular enzyme activity and growth yield in the field, implying a trade‐off. Despite this observed trade‐off in the field, growth yield was not hindered by drought. We propose a modification to the YAS framework, by combining the growth yield and resource acquisition lifestyles, which may be more appropriate for this arid system. This joint laboratory and field approach contextualizes a theoretical framework in microbial ecology and improves understanding of fungal community response to climate change.

Effect of Bacillus subtilis Zeolite Used for Sediment Remediation on Sulfide, Phosphate, and Nitrogen Control in a Microcosm

Eutrophication is an emerging worldwide issue concerning the excessive accumulation of various pollutants in sediments, owing to the release of industrial or household wastewaters to coastal areas. The coastal sediment of Goseong Bay in the Republic of Korea is organically enriched with pollutants, including heavy metals, sulfide, phosphate, and ammonia. Microbial remediation and capping techniques have been suggested as effective routes for sediment remediation. In this study, Bacillus subtilis zeolite (BZ) was used as a sediment capping material, and effective remediation of coastal sediment was observed in a 40-day laboratory microcosm experiment. A significant decrease in the sediment water content and reduced concentration of acid volatile sulfide were observed in the BZ-capped sediment. In the overlying water and pore water, significant decreases in phosphate and dissolved inorganic nitrogen (DIN; NO2-N + NO3-N and NH4-N) concentrations were observed in the BZ-treated experiment. Based on our findings, we conclude that BZ could be an effective capping material for coastal sediment remediation.