Labeling Experiments Research Articles

On the Functionalization of C60 with Vinylallenes Generated in situ by Rhodium Catalysis

AbstractThe functionalization of fullerenes is important for several reasons, primarily related to enhancing their chemical reactivity, solubility, and potential of applications in optoelectronics and biomedicine. In this study, we present a novel approach to functionalize C60 through a cascade process encompassing an unprecedented Rh‐catalyzed cycloisomerization of 1,6‐allenynes to in situ generate a vinylallene that is followed by a Diels‐Alder reaction with pristine fullerene, resulting in the formation of 6,6‐fused bicyclic fullerene derivatives. The mechanism governing this process was elucidated by DFT calculations and confirmed by deuterium labelling and control experiments, demonstrating the critical role of traces of water in the reaction medium to mediate the observed reactivity.

Continuous lattice oxygen participation of NiFe stack anode for Sustainable water Splitting

Non-noble anode catalysts exhibit insufficient activity and stability for anion exchange membrane water electrolysis (AEMWE). Accordingly, we propose an electrolyte additive strategy involving NiFe-layered double hydroxide. In situ Raman spectroscopy and 18O isotope labeling experiments reveal that Fe ions in the electrolyte change the oxygen evolution reaction mechanism from adsorbate evolution to the lattice oxygen participation mechanism (LOM). These Fe ions continuously refill Fe vacancies owing to facile metal dissolution via the LOM. In a unit cell, we achieve an excellent cell voltage of 1.73 V and energy conversion efficiency (ECE) of 69.4 % at 3.0 A cm−2, meeting the target set by the U.S. Department of Energy (1.80 V and 69.0 % ECE). Our optimized membrane electrode assembly enhances the cell activity (1.567 V at 1.0 A cm−2; ECE = 76.5 %) and stability (0.125 mVcell h−1 at 0.5 A cm−2 for 500 h) with a 100 cm2 AEMWE stack.

Single nickel atoms anchored on porous N-doped nanocarbon with dual reaction sites for highly-efficient transfer hydrogenation of furfural to furfuryl alcohol

The non-precious metal single-atom catalysts (SACs) supported on carbon materials for the catalytic transfer hydrogenation (CTH) of α,β-unsaturated aldehydes (UAL) still suffer from the problems of harsh reaction conditions and low activity. In this work, nickel SACs anchored on porous N-doped nanocarbon (Ni1/NC900) with dual reaction sites were synthesized using the high internal-phase emulsion (HIPE) template method combined with impregnation. The Ni1/NC900 catalyst exhibited remarkable catalytic activity for the CTH of furfural (FF) to furfuryl alcohol (FFA), achieving >99.0 % conversion and selectivity at 100 °C for 60 min, with a turnover frequency (TOF) of 2908.1 h−1, surpassing other reported nickel-based catalysts by 1–3 orders of magnitude. The excellent catalytic performance of Ni1/NC900 was attributed to the high mass transfer efficiency (HMTE) of the support and the dual reaction sites of Ni–N4 and pyridinic N, where Ni–N4 as Lewis acidic site for adsorption of FF and isopropanol (i-PrOH), while the adjacent pyridinic N as Lewis basic site for the deprotonation of i-PrOH. The isotope labeling experiments revealed that the hydrogenation of FF was accomplished by proton transfer with i-PrOH, in agreement with the intermolecular hydride transfer mechanism. Furthermore, Ni1/NC900 demonstrated excellent stability and well general applicability, demonstrating its potential for industrial applications. This work provides a reference for the application of carbon-based non-precious metal SACs in the CTH reaction of UAL.

A GO regulated bimetallic CoFe catalyst for efficient electrochemical nitrate reduction to ammonia under acidic conditions.

Electrocatalytic nitrate reduction to ammonia (ENRA) in acidic media is currently a challenge. Herein, we presented a CoFe2O4/GO catalyst that exhibited a high faradaic efficiency (95.51%) and ammonia yield rate (1268.04 μmol h-1 cm-2) for ENRA under acidic conditions. The ENRA reaction mechanism was investigated through in situ ATR-FTIR spectroscopy and isotope labeling experiments.

Skeletal Rearrangements in the Enzyme-Catalysed Biosynthesis of Coral-Type Diterpenes from Chitinophaga pinensis.

Two diterpene synthases from the bacterium Chitinophaga pinensis were characterised. The first enzyme mainly produced the rearranged diterpene palmatol, a compound known from octocorals, while the second enzyme made the new coral-type eunicellane chitinol. The mechanisms of both enzymes were deeply studied through isotopic labelling experiments, DFT calculations, and with a substrate analog containing a saturated double bond, resulting in the formation of derailment products that gave additional insights into the nature of the cyclisation cascade intermediates. The formation of coral-type diterpenes poses interesting questions on the functions of these compounds in organisms as different as bacteria and corals.

Evidence for Distinct Active Sites on Oxide-Derived Cu for Electrochemical Nitrate Reduction.

Cu is a promising catalyst for electrochemical nitrate (NO3-) reduction. However, desorption of the nitrite (NO2-) intermediate can occur, leading to lowered ammonia productivity and Faradaic efficiency. Here, we discovered that this does not occur with oxide-derived Cu due to the presence of at least two distinct types of cooperative active sites: one for NO3- → NO2- and another for NO2- → NH3. As a result, oxide-derived Cu exhibits enhanced ammonia productivity with a mixed NO3-/NO2- feed relative to pure NO3- or NO2-. In contrast, this was not observed with a standard Cu sample, implying the presence of only a single type of active site. Our dual-site hypothesis was supported by attenuated total reflection surface enhanced infrared absorption spectroscopy and isotopic labeling experiments involving co-reduction of 15NO3-/14NO2-. We also successfully simulated our experimental results using a mathematical model involving two different adsorption sites. These findings motivate the need for further study and rational design of such active sites.

Variations in the root mycobiome and mycorrhizal fungi between different types of Vanilla forest farms on Réunion Island.

The mycorrhizal fungi of cultivated Vanilla spp. have mainly been studied in America, while a recent study has investigated them on Réunion Island (Indian Ocean). However, there are many different types of cultivation on Réunion, from shade-house crops to forest farms of endemic or exotic trees. Here we fill a gap in the study of the root mycobiome of Vanilla by sampling vines in forest plantations on recent lava flows in the southeast of Réunion. Specifically, we aimed to characterize the fungal communities between terrestrial and epiphytic roots, between forest farms that differ mainly in the species of trees, and between Vanilla roots and ECM-like roots of nearby trees. By sequencing fungal ITS2, we showed that the Vanilla root mycobiome is diverse and differed between the root types and forest farms. Epiphytic and terrestrial roots host endophytic fungi, while a putative rust with visible urediniospores was abundant in terrestrial roots mainly. Other pathogens were detected in epiphytic roots (Colletotrichum) with no sign of disease. Following sequencing and electron microscopy, Tulasnellaceae, characterized by imperforate parenthesomes and cell wall expansion with an amorphous matrix, were shown to be the main mycorrhizal fungi in both vanilla root types. Interestingly, the dominant Tulasnellaceae OTU was found in ECM-type roots of trees belonging to the ectomycorrhizal family Sapotaceae. Further observations are needed to confirm the ectomycorrhizal association of endemic trees with Tulasnella. Moreover, labeling experiments will be instrumental in investigating the transfer of nutrients between the trees and the Vanilla through the network of mycorrhizal associations in the soil.

Unleashing the synergistic potential of 2D-2D nanosheet based S-scheme heterojunction: Cooperative boosting of CO2 reduction to solar fuel and biomass valorization.

Harnessing inexhaustible solar energy for CO2 valorization is substantial step toward achieving carbon-neutral energy cycle. However, CO2 conversion often exhibits slow kinetics, necessitating the utilization of sacrificial agents making the process economically unfeasible. In the ongoing quest for sustainable and economically feasible CO2 valorization, herein the photoreduction of CO2 to CO coupled with biomass-based alcohol oxidation to fine chemicals is reported via Bi2WO6/g-C3N4 (BWO/g-CN) 2D-2D nanosheet based S-scheme heterojunction. Importantly, BWO/g-CN-60 exhibits highest photocatalytic activity with CO production rate of 6.87 mmol g-1 h-1, accompanied by >98% selectivity and selective oxidation of veratryl alcohol to veratraldehyde, with notable yield of 42% in 6 h under simulated solar light. The apparent quantum yield (AQY) of 14.3% is achieved for CO production at the wavelength of 420 nm. Additionally, the formed heterostructure results in enhanced charge separation and accelerated charge transfer kinetics as validated by PL, EIS, and photocurrent studies. EPR, 13CO2 labeling, DFT studies, and various controlled experiments provided deeper insight into the mechanism of underlying photo-redox process. Thus, the current study presents a sustainable paradigm for CO2 mitigation by converting it into solar fuel, while synergistically producing the fine chemicals through effectively harnessing the full potential of charge carriers.

Building organic-inorganic heterojunction NiCo2O4/h-BN toward artificial photosynthesis—Boron as hole

To convert CO2 and water into organic chemicals via photoelectrocatalytic (PEC) reduction of CO2 under mild conditions is considered to be one of promising methods to address a series of problems like climate change and energy crisis caused by over-emission of CO2. Herein, the organic-inorganic heterojunctions were designed and fabricated by using organic h-BN and inorganic NiCo2O4 as precursors. The optimal NiCo2O4@h-BN-6 heterojunction exhibited impressive performance in CO2 reduction, yielding C2+ chemicals with 100 % selectivity in a rate of 28.5 μM cm−2 h−1. This phenomenon is attributed to the structural feature of three active sites of nitrogen in a unique hexacycle like benzene, which benefit the carbon-carbon coupling among the intermediates. The first observed *N-H species suggest that the N sites can adsorb protons and electrons and convert them into highly active hydrogen atoms. The verification experiments demonstrate that the material will oxidize intermediates to acetic acid where boron atoms are presented as holes in semiconductor. The isotopic labeling experiments of 13CO2 and H218O verified that the products were derived from CO2 and water. The key active intermediates such as *CHO, *=CO, and *COCHO in the synthetic process of C2+ products had been confirmed by operando FTIR spectra and DFT calculations.

The origin of methyl group in methanogen-mediated mercury methylation: From the Wolfe cycle

Methylmercury (MeHg) is a bioaccumulating neurotoxin mainly produced by anaerobic microorganisms, with methanogen being one of the important methylators. A critical aspect for understanding the mechanism for microbial mercury (Hg) methylation is the origin of the methyl group. However, the origin of methyl group in methanogen-mediated Hg methylation remains unclear. This study aims to identify the source of methyl group for MeHg synthesis in methanogens. Our study revealed that Hg methylation in Methanospirillum hungatei JF-1 is closely related to methanogenesis process, according to the results of proteomic study and substrate limitation study. Next, we proved that nearly all methyl group in MeHg derives from the Wolfe cycle in this species, rather than the previously demonstrated acetyl-coenzyme A pathway, based on the results of 13C labeling study. We then proposed the Wolfe cycle-dependent Hg methylation mechanism in this species. Further genome analyses and 13C labeling experiments indicated that the involvement of the Wolfe cycle in Hg methylation is probably a universal feature among Hg-methylating methanogens. These findings reveal a unique Hg methylation mechanism in methanogens. Our study broadens the carbon substrates and controlling factors for MeHg synthesis in the environment, which can inform the prediction of MeHg production potential and remediation strategies for MeHg contamination.

Oxidative Cleavage of Aromatic C-O Linkages by Oxoammonium Salts.

Oxidative cleavage of aromatic C(sp2)-O bond is important to the conversion of biomass and plastic wastes into value-added chemicals. Here we put forward the oxidative cleavage of para-C-O bonds in phenolic compounds in use of oxoammonium salts as oxidant and water as the oxygen source. The mechanism is that oxoammonium cation activates water to form hydroxy-oxoammonium adduct and thus realizes the ipso-substitution of 4-alkoxyphenol, which is proved by substituent effect, isotope labelling experiments, and kinetic analysis. Furthermore, this protocol is successfully applied into the depolymerization of both lignin model compounds with α-O-5 and 4-O-5 linkages and polyphenylene oxide (PPO).

Copper–nickel–MOF/nickel foam catalysts grown in situ for efficient electrochemical nitrate reduction to ammonia

Reducing nitrate (NO3−) in an aqueous solution to ammonia under ambient conditions can provide a green and sustainable NH3‐synthesis technology and mitigate global energy and pollution issues. In this work, a CuNi0.75–1,3,5‐benzenetricarboxylic acid/nickel foam (CuNi0.75–MOF/NF) catalyst grown in situ was prepared via a one‐pot method as an efficient cathode material for electrocatalytic nitrate reduction reaction (NO3RR). The CuNi0.75–MOF/NF catalyst exhibited excellent electrocatalytic NO3RR performance at −1.0 V versus a reversible hydrogen electrode, achieving an outstanding faradaic efficiency of 95.88 % and an NH3 yield of 51.78 mg h−1 cm−2. The 15N isotope labeling experiments confirmed that the sole source of N in the electrocatalytic NO3RR was the NO3− in the electrolyte. The reaction pathway for the electrocatalytic NO3RR was derived by in situ Fourier transform infrared spectroscopy and in situ differential electrochemical mass spectrometry. Density functional theory calculations revealed that the Ni element in the CuNi0.75–MOF/NF catalyst had excellent O–H activation ability and strong *H adsorption capacity. These *H species were transferred from the Ni sites to the *NO adsorption intermediates located on the Cu sites, providing a continuous supply of *H to Cu, thereby promoting the formation of *NOH intermediates and enhancing the hydrogenation process of the electrocatalytic NO3RR.

Corrosion behavior of Laves precipitates in FeCrAl-1Nb alloy at 290 °C and 7 MPa: The size effect and critical role of pH

The corrosion behavior of Laves precipitates in FeCrAl-1Nb alloy was investigated in four different deoxygenated solutions at 290 °C and 7 MPa. The Laves precipitates exhibit potential size effect during corrosion in a weak alkaline solution: the microscale precipitates undergo oxidation with amorphization and element dissolution, and these phenomena are not observed in nanoscale precipitates. The corrosion of nanoscale precipitates is less insensitive to slight changes in pH; however, micro-galvanic corrosion was observed between some nanoscale precipitates and the ferrite phase. Deuterium isotope labeling experiments observed hydrogen enrichment in some oxidized precipitates.

Covalent Labeling Automated Data Analysis Platform for High Throughput in R (coADAPTr): A Proteome-Wide Data Analysis Platform for Covalent Labeling Experiments.

Covalent labeling methods coupled to mass spectrometry have emerged in recent years for studying the higher order structure of proteins. Quantifying the extent of modification of proteins in multiple states (i.e., ligand free vs ligand-bound) can provide information on protein interaction sites and regions of conformational change. Though there are several software platforms that are used to quantify the extent of modification, the process can still be time-consuming, particularly for proteome-wide studies. Here, we present an open-source software for quantitation called Covalent labeling Automated Data Analysis Platform for high Throughput in R (coADAPTr). coADAPTr tackles the need for more efficient data analysis in covalent labeling mass spectrometry for techniques such as hydroxyl radical protein footprinting (HRPF). Traditional methods like Excel's Power Pivot (PP) are cumbersome and time-intensive, posing challenges for large-scale analyses. coADAPTr simplifies analysis by mimicking the functions used in the previous quantitation platform using PowerPivot in Microsoft Excel but with fewer steps, offering proteome-wide insights with enhanced graphical interpretations. Several features have been added to improve the fidelity and throughput compared to those of PowerPivot. These include filters to remove any duplicate data and the use of the arithmetic mean rather than the geometric mean for quantitation of the extent of modification. Validation studies confirm coADAPTr's accuracy and efficiency while processing data up to 200 times faster than conventional methods. Its open-source design and user-friendly interface make it accessible for researchers exploring intricate biological phenomena via HRPF and other covalent labeling MS methods. coADAPTr marks a significant leap in structural proteomics, providing a versatile and efficient platform for data interpretation. Its potential to transform the field lies in its seamless handling of proteome-wide data analyses, empowering researchers with a robust tool for deciphering complex structural biology data.

High-efficiency expression of alginate lyase in Pichia pastoris facilitated by Vitreoscilla hemoglobin

Vitreoscilla hemoglobin (VHb) can enhance the ability of recombinant strains to express heterologous proteins under low-oxygen conditions. However, its mechanism of action in the Pichia pastoris expression system remains unclear. In this study, three VHb construction strategies were designed to elucidate the mechanisms by which VHb promotes heterologous protein expression in P. pastoris. Notably, the co-expression pattern involving the sequential expression of the 102C300C gene followed by the Vgb gene significantly improved enzyme activity in the recombinant strain X33-102C300C-Vgb. The enzyme activity was 203.4 ± 0.57 U/mL at 180 h of fermentation in the 5-L system, which was 20.7 % higher than that of the starting strain X33-102C300C. Fluorescent labeling experiments revealed for the first time that a dual-transcription unit approach achieved superior VHb expression, indicating its potential for further development. Furthermore, transcriptomic and metabolomic analyses demonstrated that VHb enhances the growth of recombinant yeast colonies by improving respiration-related metabolism under low-oxygen conditions. This, in turn, alleviated the repression of the expression alcohol oxidase (AOX) at high methanol concentrations, resulting in increased alginate lyase activity. This study provides a theoretical foundation for improving the target protein expression in recombinant P. pastoris during high-density fermentation.

Tropical Leaf Wax n‐Alkane and n‐Alkanoic Acid Reflect δD of Precipitation During Early Stages of Leaf Growth: Insights From an Isotope Labeling Experiment

AbstractThe hydrogen isotopic compositions of leaf‐wax n‐alkanes (δDalk) and n‐alkanoic acids (δDacid) reflect ambient climatic conditions (including precipitation δD values, δDprecip). However, the understanding of climatic conditions of exactly which period (i.e., early or entire period of the leaf's lifespan) these biomarkers preserve is still evolving. Previous studies on the δDalk and δDacid values, done only in extra‐tropical regions, mostly indicate that δDalk values are biased toward the early growing season whereas δDacid values are not biased toward any season. To decipher the seasonal bias in δDalk and δDacid records from tropics, we conducted a long‐duration experiment wherein deciduous and evergreen species were grown using normal water (δD = −2‰) during early stages of the leaf growth and later using isotopically labeled water (δD = 1,000‰). Our experiment revealed (a) in deciduous and evergreen species, δDalk and δDacid values reflect δDprecip during early stages of the leaf growth, (b) synchronous synthesis of n‐alkanes and n‐alkanoic acids, and (c) in deciduous species, minor incorporation of the previous year's photosynthates in leaf wax pool of the current year's mature leaves. Our study suggests that δDalk and δDacid records in the tropics are biased toward the climatic conditions prevailing during early stages of leaf growth. This bias should be considered while comparing the δDprecip values generated from leaf wax proxy records and isotope‐enabled atmospheric circulation models.

LuCl3/B(C6F5)3 Cocatalyzed Reductive Deoxygenation of Ketones, Aldehydes, Alcohols, and Ethers to Alkanes with Pinacolborane.

This report describes the LuCl3/B(C6F5)3 cocatalyzed reductive deoxygenation of 67 ketones, aldehydes, alcohols, and ethers to alkanes under mild conditions. The strategy tolerates reactive amino, hydroxyl, nitro, halogen, vinyl, and ester functional groups, and the results demonstrate rare chemoselective deoxygenation of α,β-unsaturated ketones. Isotopic labeling experiments, control experiments, and derivatization studies are used to elucidate the reaction mechanism.

Topological Synthesis of 2D High-Entropy Multimetallic (Oxy)hydroxide for Enhanced Lattice Oxygen Oxidation Mechanism.

Owing to sluggish reaction kinetics and high potential, oxygen evolution reaction (OER) electrocatalysts face a trade-off between activity and stability. Herein, an innovative topological strategy is presented for preparing 2D multimetallic (oxy)hydroxide, including ternary CoFeZn, quaternary CoFeMnZn, and high-entropy CoFeMnCuZn. The key to the synthesis lies in using Ca-rich brownmillerite oxide as a precursor, which possesses inherent structural flexibility enabling tailored elemental adjustments and topologically transforms from a point-shared structure of metal-oxygen octahedrons into an edge-shared structure under alkaline conditions. The presence of Zn in the catalysts causes a shift in the center of the O2p band toward the Fermi level, resulting in more Co4+ species, which drive holes into oxygen ligands to promote intramolecular oxygen coupling. The triggered lattice oxidation mechanism is identified by detecting peroxo-like (O2 2-) negative species using tetramethylammonium chemical probe, along with 18O isotope labeling experiments. As a result, the catalyst demonstrates an overpotential of 267mV at 10 mA cm-2, ranking it among the top-performing non-Ni-based catalysts. Importantly, the catalysts also show high Fe-leaching resistance during OER compared to conventional NiFe and CoFe hydroxides/(oxy)hydroxides. The assembled zinc-air battery enables stable operation for over 225 h at a low charging voltage of 1.93V.

Enhanced Extracellular Electron Transfer in Magnetite-Mediated Anaerobic Oxidation of Methane Coupled to Humic Substances Reduction: The Pivotal Role of Membrane-Bound Electron Transfer Proteins.

Humic substances are organic substances prevalent in various natural environments, such as wetlands, which are globally important sources of methane (CH4) emissions. Extracellular electron transfer (EET)-mediated anaerobic oxidation of methane (AOM)-coupled with humic substances reduction plays an important role in the reduction of methane emissions from wetlands, where magnetite is prevalent. However, little is known about the magnetite-mediated EET mechanisms in AOM-coupled humic substances reduction. This study shows that magnetite promotes the reduction of the AOM-coupled humic substances model compound, anthraquinone-2,6-disulfonate (AQDS). 13CH4 labeling experiments further indicated that AOM-coupled AQDS reduction occurred, and acetate was an intermediate product of AOM. Moreover, 13CH313COONa labeling experiments showed that AOM-generated acetate can be continuously reduced to methane in a state of dynamic equilibrium. In the presence of magnetite, the EET capacity of the microbial community increased, and Methanosarcina played a key role in the AOM-coupled AQDS reduction. Pure culture experiments showed that Methanosarcina barkeri can independently perform AOM-coupled AQDS reduction and that magnetite increased its surface protein redox activity. The metatranscriptomic results indicated that magnetite increased the expression of membrane-bound proteins involved in energy metabolism and electron transfer in M. barkeri, thereby increasing the EET capacity. This phenomenon potentially elucidates the rationale as to why magnetite promoted AOM-coupled AQDS reduction.

Single-step conversion of methane-steam to methanol on single-atom Cu1/γ-Al2O3 catalyst prepared via electrostatic anchoring

Direct conversion of methane to methanol in heterogeneous catalysis is of paramount importance but remains a challenging issue in improving catalytic activity and selectivity. Here, we report that Cu single-atom sites anchored on γ-Al2O3 oxides (Cu1/γ-Al2O3) using surface electrostatic adsorption, are highly active (methanol yield of ∼47 mmol/molCu/h) and stable in continuous conversion of methane-steam to methanol at 200 °C, comparable to most of the state-of-the-art Cu-zeolite catalysts. The combined DFT calculation and isotope labeling experiments reveal the methane-to-methanol reaction pathway on Cu single-atom sites and methanol formation is the rate limiting step. The further theoretical study indicates that single Cu atom as active site can preferentially activate methane C-H bond instead of methanol and has larger advantage for highly-selective methanol yield compared with [Cu(II)-OH]+ and [CuOCu]2+ active sites. Our molecular-level findings on Cu1/γ-Al2O3 single-atom catalyst pave the way to prepare better non-zeolite catalysts for methane to methanol.