Labeling Agent Research Articles

Simultaneous 2-photon and 3-photon excitation with a red fluorescent protein-cyanine dye probe pair in the 1700-nm excitation window for deep in vivo neurovascular imaging

In vivo imaging of the neurovascular network is considered to be one of the most powerful approaches for understanding brain functionality. Nevertheless, simultaneously imaging the biological neural network and blood vessels in deep brain layers in a non-invasive manner remains to a major challenge due to the lack of appropriate labeling fluorescence probe pairs. Herein, we proposed a 2-photon and 3-photon fluorescence probe pair for neurovascular imaging. Specifically, the red fluorescence protein (RFP) with an absorption maximum of around 550 nm is used as a 3-photon excited probe to label neurons, and a cyanine derivative dye Q820@BSA has a NIR absorption maximum of 825 nm as a 2-photon excited probe to label the vasculature, enabling single wavelength excitation at 1650 nm for neurovascular imaging with high emission spectral separation (>250 nm). In particular, the 2-photon action cross-section of Q820@BSA was found to be about 2-fold larger than that of indocyanine green (ICG), a commonly used red 2-photon fluorescence labeling agent, at the same excitation wavelength. Benefiting from the long wavelength advantage in reducing scattering in both 2 and 3-photon excitation of the fluorescence pairs, we demonstrated in vivo neurovascular imaging in intact adult mouse brains through white matter and deep into the hippocampus in the somatosensory cortex.

Optimized method for fluorine-18 radiolabeling of Affibody molecules using RESCA

BackgroundIn recent years, the interest in Al[18F]F as a labeling agent for Positron Emission Tomography (PET) radiotracers has risen, as it allows for fast and efficient fluorine-18 labeling by harnessing chelation chemistry. The introduction of Restrained Complexing Agent (RESCA) as a chelator has also shown that chelator-based radiolabeling reactions can be performed in mild conditions, making the radiolabeling process attractively more facile than most conventional radiofluorination methods. The aim of the study was to establish optimized conditions for Al[18F]F labeling of Affibody molecules using RESCA as a complexing agent, using Z09591 and Z0185, two Affibody proteins targeting PDGFRβ and TNFα, respectively, as model compounds.ResultsThe Al[18F]F labeling of RESCA-conjugated Z09591 was tested at different temperatures (rt to 60 °C) and with varying reaction times (12 to 60 min), and optimal conditions were then implemented on RESCA-Z0185. The optimized synthesis method was: 1.5–2.5 GBq of cyclotron produced fluorine-18 were trapped on a QMA cartridge and eluted with saline solution to react with 12 nmol of AlCl3 and form Al[18F]F. The respective RESCA-conjugated Affibody molecule (14 nmol) in NaOAc solution was added to the Al[18F]F solution and left to react at 60 °C for 12 min. The mixture was purified on a NAP5 size exclusion column and then analyzed by HPLC. The entire process took approximately 35 min, was highly reproducible, indicating the efficiency and reliability of the method. The labeled compounds demonstrated retained biological function for their respective targets after purification.ConclusionsWe present a general and optimized method for Al[18F]F labeling of RESCA-conjugated Affibody molecules, which can be widely applied to this class of peptide-based imaging agents. Moreover, radiochemical yields were improved when the labeling was conducted at 37 °C or above. In vitro and in vivo assessment of the respective tracers was promising, showing retained binding capacity as well as moderate defluorination, which is usually regarded as a potential downside for RESCA-conjugated tracers.Graphical abstract

Determination of triterpenic acids in Ribes stenocarpum maxim by HPLC-APCI-MS with 2-(12,13-dihydro-7H-dibenzo[a,g]carbazol-7-yl)ethyl4-methylben-zenesulfonate labelling agent

The study utilized a fluorescent labeling reagent called 2-(12,13-dihydro-7H-dibenzo[a,g]carbaz-ol-7-yl)ethyl4-methylben-zenesulfonate (DDCETS) to label of triterpenic acids and the approach was used to measure the amount of triterpenic acids in different organs of the Ribes stenocarpum Maxim. (RSM) from several areas in Qinghai Province. The analytical potential of the reagent was evaluated using six triterpene acids, namely maslinic acid, corosolic acid, betulinic acid, betulonic acid, oleanolic acid and ursolic acid. The results showed that the method successfully determined that the main components of triterpenoids in RSM from different regions of Qinghai Province were oleanolic acid and ursolic acid. The highest content of oleanolic acid and ursolic acid was 2037.59 mg/Kg in branches and 2088.97 mg/Kg in fruits. The least distributed organs of oleanolic acid and ursolic acid in the RSM in each region were seeds, with the lowest content of 460.88 mg/Kg in Dongxia Township, Datong County. And when analyzed in relation to the geographical conditions of the diverse origins, the fruits and leaves of the RSM were more abundant in both types of triterpene acids in areas with lower altitude, temperature and precipitation.

Development and evaluation of a radiolabelling agent for white blood cell scans

Radiolabelled autologous leukocytes have been used for the clinical diagnosis of inflammation and infection. To develop a stable and efficient radiopharmaceutical for labelling leukocytes, we prepared a novel radioiodinated cell-penetrating peptide, 125I-TAT, using a bi-functional linker. 125I-TAT was stable for two days under three different temperature conditions of −20 °C, 4 °C, and 40 °C, with its radiochemical purity remaining over 99%. Iodinated TAT was non-toxic to leukocytes with an IC50 value of over 100 μM. The labelling efficiency of 125I-TAT using 1ｘ107 cells ranged from 27% to 53% when the three leukocyte cell lines were pre-treated with DMSO. This is comparable to the labelling efficiency recommended by the guideline for conventional labelling agents using 2ｘ108 cells. Radioiodinated cell-penetrating peptide may be an improved radiopharmaceutical for white blood cell scans by further optimization.

Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues.

Third-harmonic generation microscopy is a powerful label-free nonlinear imaging technique, providing essential information about structural characteristics of cells and tissues without requiring external labelling agents. In this work, we integrated a recently developed compact adaptive optics module into a third-harmonic generation microscope, to measure and correct for optical aberrations in complex tissues. Taking advantage of the high sensitivity of the third-harmonic generation process to material interfaces and thin membranes, along with the 1,300-nm excitation wavelength used here, our adaptive optical third-harmonic generation microscope enabled high-resolution in vivo imaging within highly scattering biological model systems. Examples include imaging of myelinated axons and vascular structures within the mouse spinal cord and deep cortical layers of the mouse brain, along with imaging of key anatomical features in the roots of the model plant Brachypodium distachyon. In all instances, aberration correction led to enhancements in image quality.

Biocompatible and Water-Soluble Shortwave-Infrared (SWIR)-Emitting Cyanine-Based Fluorescent Probes for In Vivo Multiplexed Molecular Imaging.

Extending molecular imaging into the shortwave-infrared (SWIR, 900-1400 nm) region provides deep tissue visualization of biomolecules in the living system resulting from the low tissue autofluorescence and scattering. Looking at the Food and Drug Administration-approved and clinical trial near-infrared (NIR) probes, only indocyanine green (ICG) and its analogues have been approved for biomedical applications. Excitation wavelength less than 800 nm limits these probes from deep tissue penetration and noninvasive fluorescence imaging. Herein, we present the synthesis of ICG-based π-conjugation-extended cyanine dyes, ICG-C9 and ICG-C11 as biocompatible, and water-soluble SWIR-emitting probes with emission wavelengths of 922 and 1010 nm in water, respectively. Also, ICG-, ICG-C9-, and ICG-C11-based fluorescent labeling agents have been synthesized for the development of SWIR molecular imaging probes. Using the fluorescence of ICG, ICG-C9, and ICG-C11, we demonstrate three-color SWIR fluorescence imaging of breast tumors by visualizing surface receptors (EGFR and HER2) and tumor vasculature in living mice. Furthermore, we demonstrate two-color SWIR fluorescence imaging of breast tumor apoptosis using an ICG-conjugated anticancer drug, Kadcyla and ICG-C9 or ICG-C11-conjugated annexin V. Finally, we show long-term (38 days) SWIR fluorescence imaging of breast tumor shrinkage induced by Kadcyla. This study provides a general strategy for multiplexed fluorescence molecular imaging with biocompatible and water-soluble SWIR-emitting cyanine probes.

MRI-Based Cell Tracking of OATP-Expressing Cell Transplants by Pre-Labeling with Gd-EOB-DTPA.

A critical step in cell-based therapies is determining the exact position of transplanted cells immediately post-transplant. Here, we devised a method to detect cell transplants immediately post-transplant, using a clinical gadolinium-based contrast agent. These cells were detected as hyperintense signals using a clinically familiar T1-weighted MRI protocol. HEK293 cells were stably transduced to express human OATP1B3, a hepatic organic anion transporting polypeptide that transports Gd-EOB-DTPA into cells that express the transporters, the intracellular accumulation of which cells causes signal enhancement on T1-weighted MRI. Cells were pre-labeled prior to injection in media containing Gd-EOB-DTPA for MRI evaluation and indocyanine green for cryofluorescence tomography validation. Labeled cells were injected into chicken hearts, in vitro, after which MRI and cryofluorescence tomography were performed in sequence. OATP1B3-expressing cells had substantially reduced T1 following labeling with Gd-EOB-DTPA in culture. Following their implantation into chicken heart, these cells were robustly identified in T1-weighted MRI, with image-derived injection volumes of cells commensurate with intended injection volumes. Cryofluorescence tomography showed that the areas of signal enhancement in MRI overlapped with areas of indocyanine green signal, indicating that MRI signal enhancement was due to the transplanted cells. OATP1B3-expressing cells can be pre-labeled with Gd-EOB-DTPA prior to injection into tissue, affording the use of clinically familiar T1-weighted MRI to robustly detect cell transplants immediately after transplant. This procedure is easily generalizable and has potential advantages over the use of iron oxide based cell labeling agents and imaging procedures.

Boronic acid inhibitors of penicillin-binding protein 1b: serine and lysine labelling agents

Penicillin-binding proteins (PBPs) contribute to bacterial cell wall biosynthesis and are targets of antibacterial agents. Here, we investigated PBP1b inhibition by boronic acid derivatives. Chemical starting points were identified by structure-based virtual screening and aliphatic boronic acids were selected for further investigations. Structure–activity relationship studies focusing on the branching of the boron-connecting carbon and quantum mechanical/molecular mechanical simulations showed that reaction barrier free energies are compatible with fast reversible covalent binding and small or missing reaction free energies limit the inhibitory activity of the investigated boronic acid derivatives. Therefore, covalent labelling of the lysine residue of the catalytic dyad was also investigated. Compounds with a carbonyl warhead and an appropriately positioned boronic acid moiety were shown to inhibit and covalently label PBP1b. Reversible covalent labelling of the catalytic lysine by imine formation and the stabilisation of the imine by dative N–B bond is a new strategy for PBP1b inhibition.

Target and Semitarget Analysis of Advanced Glycation End Products Using a New Pair of Permanently Positively Charged Stable Isotope Labeling Agents.

A pair of positively charged stable isotope labeling (SIL) agents, (4-carbonochloridoylphenyl)-trimethylazanium iodide (d0-CCPTA) and d6-CCPTA, were designed and synthesized. These agents were employed in the precolumn labeling of advanced glycation end products (AGEs) within 5 min under mild conditions. Through derivatization, the mass spectrometry response of the AGEs was enhanced by approximately 2 orders of magnitude. The detection and quantitation limits were in the ranges of 3.1-7.1 and 10.0-23.7 ng/kg, respectively. The recoveries were in the range of 90.1-94.3%, and the matrix effect ranged from -6.6 to -3.5%. CCPTA produced "CCPTA-specific production ions", and all analytes were analyzed by common multiple reaction monitoring (MRM) parameters. The common MRM parameters were applied to the semitarget analysis of 41 types of AGE candidates in the absence of standards, with 13 AGEs identified.

BODIPY-fused uracil: synthesis, photophysical properties, and applications.

Fluorescent nucleobase and nucleic acid analogs are important tools in chemical and molecular biology as fluorescent labelling of nucleobases has applications in cellular imaging and anti-tumor activity. Boron-dipyrromethene (BODIPY) dyes exhibiting high brightness and good photostability are extensively used as fluorescent labelling agents and as type II photosensitizers for photodynamic therapy. Thus, the combination of nucleobases and BODIPY to obtain new compounds with both anti-tumor activity and fluorescent imaging functions is the focus of our research. We synthesized two new nucleobase analogs 1 and 2 by fusing the BODIPY core directly with uracil which resulted in favorable photophysical properties and high emission quantum efficiencies particularly in organic solvents. Further, we explored the newly synthesized derivatives, which possessed good singlet oxygen generation efficiencies and bio-compatibility, as potential PDT agents and our results show that they exhibit in vitro anti-tumor activities.

Imaging of Subcellular Distribution of Platinum in Single Cells Using Laser Ablation Inductively Coupled Plasma Mass Spectrometry.

Laser ablation inductively coupled plasma-mass spectrometry (LA-ICP-MS) is a well-established and sensitive analytical technique, which provides high-resolution imaging of endogenous elements, element tagged-markers, metal-containing nanoparticles, and metallodrugs within cells. Here we describe a protocol for imaging the subcellular distribution of platinum within A549 cells, following their incubation with the platinum-based anticancer agent, Oxaliplatin. We outline the essential steps in sample preparation and instrumental setup and discuss how the current generation of low-dispersion instruments facilitates new approaches to data acquisition and image processing. The protocol described herein can be easily adapted for other cell lines and metal-containing labeling agents.

Liquid crystal-based label-free low-cost sensing platform: Engineering design based on interfacial interaction and transport phenomena

Typically, the detection methods of chemical species in sensing platform involves the use of labelling agents. Even though it is selective, the process is complex and time consuming. Liquid crystals (LC) are sensitive and rapidly responsive to the presence of any foreign species. When a LC layer interacts with aqueous (ionic surfactant) solution, there is homeotropic alignment of the director orientation due to the anisotropic interactions at the interface. This leads to the dark birefringence patterns observed in polarised microscope under cross polarisation. In the presence of H+ in the aqueous layer, the LC orientation is distorted resulting in a change of the birefringence patterns in the polarised micrographs. We have prepared an optical cell where the aqueous solution can interact with the LC layer confined within micrometre sized grids. The flow arrangement and the associated mass transfer process is optimised for enhanced interaction. The elastic interactions of the LC layer with H+ at the interface distorts the director orientation, and the birefringence pattern is captured with polarised microscope (cross-polarisation). There is a correlation between the polarised micrographs and the concentration of the H+, which forms the basis of detection principle. The detection of H+ has no interference with salts. The present method can be used for recognition of (bio-) chemical reactions releasing H+. The developed optical flow cell is inexpensive, less than $1. The outcome of the present work may be useful for technological adaption and prospective use in point-of-care devices and field test kits.

Effects of Reaction Temperature and Cadmium Source on the Optical, Morphological and Cytotoxic Properties of CdSe/ZnSe Quantum Dots

AbstractThe colloidal synthesis of CdSe/ZnSe core/shell quantum dots (QDs) under nitrogen gas flow is presented in this study. The optical, morphology and structural properties of CdSe/ZnSe core/shell QDs are varied by changing the growth temperature and the cadmium source (Cd2+). The Fourier transform infra‐red studies validate that CdSe/ZnSe QDs capped with functional −COOH groups were formed. The morphological and composition studies conducted using high resolution transmission microscope, selected area electron diffraction andenergy dispersive spectroscope confirmed the formation of pure and mono‐disperse QDs while photoluminescence and ultra‐violet visible spectroscopy displayed their improved fluorescent properties. Caco‐2 cell line was cultured from colon cancer and cytotoxic studies were conducted to test for cell viability of various capped 3‐MPA CdSe/ZnSe QDs at various concentrations. The formed CdSe/ZnSe QDs prominently bear the zinc‐blende structure with their particle size lying well below the Bohr excitation radii. Their hydrophilic nature and the availability of functional groups on the CdSe/ZnSe QDs makes them excellent potential labeling and therapeutic agents for the colon cancer disease diagnosis.

Lysozyme binding with amikacin and levofloxacin studied by tritium probe, fluorescence spectroscopy and molecular docking

Lysozyme complexes with amikacin and levofloxacin were studied by spectroscopy approaches as well as using a tritium probe. Tritium was used as a labeling agent to trace labeled compound concentration in a system of two immiscible liquids and in the atomic form to determine the possible position of the binding site. Co-adsorption of protein and drug at the liquid-liquid interface was analyzed by scintillation phase method that allowed us to directly determine the amount of protein and drug in the mixed adsorption layer. Also, tensiometric measuring of the interfacial tension was used for calculation of binding parameters accordingly to Fainerman model. The treatment of complexes with atomic tritium followed by trypsinolysis and analysis of tritium distribution in the lysozyme peptides reveals the binding sites, binding energies in which were analyzed using molecular docking. Formation of complexes with amikacin and levofloxacin preserves secondar structure of protein. However, the formation of complex with amikacin leads to the almost total loss of the enzymatic activity of lysozyme and the redshift of the maximum on the lysozyme fluorescence band. A slight decrease in the distribution coefficient of lysozyme in the presence of amikacin assumes that the complex has higher hydrophilicity in comparison to lysozyme without additives. The most favorable for binding were the positions of the active centers that included amino acids Asp52 and Glu35, as well as in the vicinity of peptide His15-Arg21, with the participation of amino acids Tyr20, Arg14. In the case of levofloxacin, the formation of lysozyme-ligand complex in aqueous solution is possible without changing the microenvironment of the active center of the protein. Binding of levofloxacin to the active center of the enzyme was the most favorable, but Asp52 and Glu35 that are responsible for the enzymatic activity of lysozyme, were not affected.

Nanoarchitectonics of WLC-H3PO4–MnFe2O3 nanocomposite for latent fingerprint detection

Carbon-based material powders have been applied in fingerprints development. However, sustaining fluorescence in solid substances remains difficult due to the severe emission suppression of carbon-based compounds in solid-state materials. This study is the first to report on the use of activated wool char coated on manganese-doped iron oxide nanoparticle (WLC-H3PO4–MnFe2O3) as a novel nanocomposite (nCOM) for latent fingerprint (LAFPs) detection via the powder dusting approach. Fourier-transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), Scanning Electron Microscope (SEM), Energy-Dispersive X-ray Spectrometry (EDS), and Transmission Electron Microscopy (TEM), XPS (X-ray photoelectron spectroscopy) were used to analyze this nanocomposite. The nanocomposite produced good LAFP pictures on non-porous substrates such as aluminium foil and aluminium sheets. Moreover, this nanocomposite could be utilized as a labeling agent and could aid in the detection of LFP under visible light by providing distinct readability ridges and high-contrast fingerprint pictures.

CQTDs/SiO2NPs nanocomposite for Pb2+ and Cd2+ remediation and reuse applications in LFP detection and photocatalysis

Due to their propensity to bioaccumulate, lead and cadmium, two hazardous heavy metals, can seriously disrupt the ecosystem. These metals have the potential to cause major environmental and human health problems. Herein, carbon quantum dots were used to coat silica nanoparticles to create a brand-new nanocomposite called CQTDs/SiO2NPs. Cd2+ and Pb2+ ions were effectively removed from water and preconcentrated using the produced nanocomposite. The novel nanocomposite was characterized using SEM, TEM, FT-IR, XRD, and XRF. The bending vibration of Si–O–Si/Si–O–C and Si–OH are responsible for the FT-IR bands that were detected in the nanocomposite at 1041 and 954 cm−1, respectively. XRD demonstrated that the silica nanoparticles were amorphous. Additionally, SEM and TEM analysis revealed the nanocomposite's shape, which was determined to be spherical with minimal agglomeration.While XPS demonstrated the binding energy of the functional group present in the composite and further confirmed the metal loaded onto the adsorbent. On CQTDs/SiO2NPs nanocomposite, the optimum pH and dosage were 8 and 0.2 g respectively. The highest Cd2+ and Pb2+ ion adsorption capabilities are 14.87 and 38.49 mg g −1, respectively. The use of the nanocomposite resulted in an exothermic, physical and non-spontaneous adsorption that closely resembled the Langmuir equilibrium isotherm and the second-order kinetics. The metal loaded adsorbent used as a fingerprint labelling agent displayed clear fingerprint ridges and degraded the sulfamethoxazole (SMX) for up to 90 %. The prepared composite has proven to be coherent in heavy metal removal and can thus be reused in Latent fingerprint and photocatalysis applications. The reuse of the nanocomposite in the above-mentioned applications is an alternative solution to avoid secondary pollution.

BCMA-Directed Low Dose Alpha-Emitter Therapy Eliminates Minimal Residual Disease in a Multiple Myeloma Mouse Xenograft Model

BACKGROUND: Unprecedented reductions in multiple myeloma (MM) tumor burden after treatment with B cell maturation antigen (BCMA) directed bispecific T-cell engagers, or chimeric antigen receptor modified T-cells, have translated into improved progression free and overall survival; however, virtually all patients are predicted to ultimately relapse. The mechanisms of resistance to BCMA targeting agents are currently being explored, but presumably reflect persistence of MM cell subpopulations that either lack target antigen or otherwise evade immune-mediated tumor cell killing. Antigen targeted delivery of radiation to tumor cells leverages a unique effector mechanism that capitalizes on the exquisite sensitivity of malignant plasma cells to radiation. The α-emitter astatine-211 ( 211At) has particular promise as it deposits a very large amount of energy (~100 keV/μm) within a few cell diameters (50-90 μm) resulting in irreparable double-stranded DNA breaks. The high energy cell killing mediated by 211At is agnostic to MM cell heterogeneity, facilitates bystander delivery of radiation to target antigen negative clones, and limits radiation exposure to normal cells. We hypothesized that 211At targeting BCMA may be uniquely suited to eliminate residual MM cells. METHODS: We conjugated a human IgG1 anti-BCMA mAb and an isotype matched nonbinding control mAb (ofatumumab), with the amine-reactive labeling agent B10-NCS to enable 211At radiolabeling. In biodistribution studies of 211At-BCMA-B10 and 211At-ofatumumab-B10 using NOD.Cg-Rag1 tm1MomIl2rg tm1Wjl/SzJ (NRG) mice bearing flank MM tumor cell xenografts (MM1R or NCI-H929; n=5 mice/group), we demonstrated tumor-specific uptake of BCMA-B10 relative to control mAb and identified the optimal dose of 211At-mAb-B10 (210μg) for assessing therapeutic efficacy. In subsequent therapy studies, NRG mice (n=7-10/group) received 0.3-0.4e6 NCI-H929 luc tumor cells by tail vein injection 6-7 days prior to administration of 210 µg of 211At-BCMA-B10 or 211At-ofatumumab-B10 or no therapy (non-treatment control). Animal body weight was monitored serially, and disease was tracked using in vivo bioluminescence imaging (IVIS Spectrum) performed at 8 or more timepoints over 150 days. RESULTS: Disease elimination was defined as survival with no measurable disease by IVIS at 150 days following treatment. All mice receiving 6 or 8 µCi of 211At-BCMA-B10 (n=36) were cured (100%) after a single infusion of 211At-BCMA-B10. Mice in the untreated control groups uniformly experienced exponential tumor growth. At the lowest 211At dose (6 µCi), all BCMA targeted mice survived for more than 150 days while no untreated control mice survived beyond day 60 (median duration of survival 49 days [range 42-60 days]). Mice receiving 211At-ofatumumab had expected attenuation in tumor growth relative to untreated controls (presumably a consequence of non-specific radiation exposure); with a median duration of survival of 85 days; no mice survived beyond 108 days (range 65-108 days) [Figure 1, Figure 2]. No significant toxicity was observed in the 211At-BCMA-B10 treated groups. Among mice receiving 8 μCi of 211At-BCMA-B10 median animal body weight on day 14 post-treatment was 106% of baseline (range 97%-109%). Among mice receiving 6 μCi of 211At-BCMA-B10 the median body weight on day 14 was 107% of baseline (range 100% to 111%) and on day 150 the median weight was 123% of baseline (range 116% to 126%). CONCLUSIONS: Tumor responses are encouraging with 100% of mice cured of MM after receiving low doses of BCMA targeted 211At. While we have previously demonstrated that 211At-CD38 could eliminate MM in a similar model system, in that setting fewer than 50% of mice bearing the same NCI-H929 Luc tumors, and treated with 8 μCi of 211At, survived to day 150 [O'Steen S. Blood, 2019]. In contrast, here we show that 100% of mice are cured after receiving 6 μCi of 211At-BCMA-B10. These findings support further evaluation of BCMA targeted 211At in other tumor model systems and in clinical trials aimed at eliminating minimal residual disease.

Hybrid machine-learning framework for volumetric segmentation and quantification of vacuoles in individual yeast cells using holotomography.

The precise, quantitative evaluation of intracellular organelles in three-dimensional (3D) imaging data poses a significant challenge due to the inherent constraints of traditional microscopy techniques, the requirements of the use of exogenous labeling agents, and existing computational methods. To counter these challenges, we present a hybrid machine-learning framework exploiting correlative imaging of 3D quantitative phase imaging with 3D fluorescence imaging of labeled cells. The algorithm, which synergistically integrates a random-forest classifier with a deep neural network, is trained using the correlative imaging data set, and the trained network is then applied to 3D quantitative phase imaging of cell data. We applied this method to live budding yeast cells. The results revealed precise segmentation of vacuoles inside individual yeast cells, and also provided quantitative evaluations of biophysical parameters, including volumes, concentration, and dry masses of automatically segmented vacuoles.

Ammonia Mediated Silver Nanoparticles Based Detection of Bisphenol A, an Endocrine Disruptor, in Water Samples after Vortex-Assisted Liquid–Liquid Microextraction

Bisphenol A (BPA), an alkylphenolic compound, is one of the most polluting and hazardous organic chemicals. Its routine detection is, however, still rather expensive due to high-cost equipment. In this context, we applied the effect caused by BPA to the optical properties of surfactant-stabilized silver nanoparticles further modified with the use of ammonia (AgNP-NH3) to develop a simple and quantitative approach for BPA determination. The experimental conditions of the AgNP-NH3 probe were adjusted to establish a stable and sensitive response toward BPA in aqueous media. The use of probe dispersion measured at a wavelength of 403 nm enabled a limit of detection of 2.0 nmol L−1 (0.5 ng mL−1), with a linear response as a function of a concentration of BPA ranging from 10 to 120 nmol L−1 (from 2.2 to 27 ng mL−1). The use of vortex-assisted liquid–liquid microextraction ensured the application of selective determination to real tap and stream water samples, with recoveries ranging from 85.0 to 111%. The protocol developed herein is simple, sensitive, and selective, does not require the use of toxic labeling agents, and can be easily adapted for the routine analysis of BPA in different real samples.

Studying the structural organization of non-membranous protein hemoglobin in a lipid environment after reconstitution

In our current work we have developed a supported 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) bilayer with embedded hemoglobin, reconstituted via detergent-mediated method. Microscopic studies revealed that the hemoglobin molecules could be visualized without any labelling agents. The reconstituted proteins assemble themselves as supramolecular structures to adapt to lipid bilayer environment. The nonionic detergent, n-octyl-β-d-glucoside (NOG) used for insertion of hemoglobin played an important role in formation of these structures. When concentrations of lipid, protein and detergent were raised by four folds, we observed phase separation by protein molecules within bilayer via protein-protein assembly. This phase separation process exhibited extremely slow kinetics to form large stable domains with correlation times in the order of minutes. Confocal Z-scanning images showed that these supramolecular structures generated membrane deformities. UV–Vis, Fluorescence and Circular Dichroism (CD) measurement indicated minor structural change to expose the hydrophobic regions of the protein to adjust the hydrophobic stress of the lipid environment whilst Small Angle Neutron Scattering (SANS) results indicated that the hemoglobin molecules retained their overall tetrameric form in the system. In conclusion, we state that this investigation allowed us to closely inspect some rare but noteworthy phenomena like the formation of supramolecular structures, large domain formation and membrane deformation etc.