A hybrid process of anaerobic digestion (AD), aerobic degradation, and electrochemical separation was evaluated for treating real swine wastewater that is rich in organic and nutrient to achieve methane and nutrient recovery and industry standard discharge quality. Fe anode electrocoagulation and Mg anode struvite electrochemical precipitation (SEP) were evaluated as AD pretreatments. Both removed partial chemical oxygen demand (COD) from raw swine wastewater, but only SEP slightly enhanced the methane yield of pretreated swine wastewater. The SEP efficiency of the AD effluent was significantly better than raw swine wastewater. A further coupled micro/ultra-filtration produced high-purity (96%) struvite. SEP and struvite chemical precipitation (SCP) were evaluated for AD effluent treatment. This showed that compared with SCP following first-order reaction kinetics (reaction rate constant of 0.791 and 0.854 h−1 for NH4+-N and PO43--P), SEP not only achieved better removal of COD, NH4+-N and PO43--P, but was also shown to follow zero-order reaction kinetics (reaction rate constant of 5.72 and 5.78 mmol L−1 h−1 for NH4+-N and PO43--P). The SEP and SCP treated AD effluent was evaluated by conventional activated sludge (CAS), showing faster COD removal (first-order reaction rate constant of 0. 213 and 0.163 h−1) and lower residual COD (150 and 248 mg L−1) from SEP than SCP treated AD effluent, making the final effluent well below Chinese livestock wastewater discharge standards. Therefore, an emerging hybrid anaerobic membrane bioreactor (AnMBR)-SEP-CAS is proposed for swine wastewater treatment and proved to be more economically viable than the conventional hybrid AD-SCP-CAS process via cost-benefit analysis.