K-edge X-ray Absorption Data Research Articles

Effect of Lewis Acids on the Structure and Reactivity of a Mononuclear Hydroxomanganese(III) Complex.

The addition of Sc(OTf)3 and Al(OTf)3 to the mononuclear MnIII-hydroxo complex [MnIII(OH)(dpaq)]+ (1) gives rise to new intermediates with spectroscopic properties and chemical reactivity distinct from those of [MnIII(OH)(dpaq)]+. The electronic absorption spectra of [MnIII(OH)(dpaq)]+ in the presence of Sc(OTf)3 (1-ScIII) and Al(OTf)3 (1-AlIII) show modest perturbations in electronic transition energies, consistent with moderate changes in the MnIII geometry. A comparison of 1H NMR data for 1 and 1-ScIII confirm this conclusion, as the 1H NMR spectrum of 1-ScIII shows the same number of hyperfine-shifted peaks as the 1H NMR spectrum of 1. These 1H NMR spectra, and that of 1-AlIII, share a similar chemical-shift pattern, providing firm evidence that these Lewis acids do not cause gross distortions to the structure of 1. Mn K-edge X-ray absorption data for 1-ScIII provide evidence of elongation of the axial Mn-OH and Mn-N(amide) bonds relative to those of 1. In contrast to these modest spectroscopic perturbations, 1-ScIII and 1-AlIII show greatly enhanced reactivity toward hydrocarbons. While 1 is unreactive toward 9,10-dihydroanthracene (DHA), 1-ScIII and 1-AlIII react rapidly with DHA (k2 = 0.16(1) and 0.25(2) M-1 s-1 at 50 °C, respectively). The 1-ScIII species is capable of attacking the much stronger C-H bond of ethylbenzene. The basis for these perturbations to the spectroscopic properties and reactivity of 1 in the presence of these Lewis acids was elucidated by comparing properties of 1-ScIII and 1-AlIII with the recently reported MnIII-aqua complex [MnIII(OH2)(dpaq)]2+ ( J. Am. Chem. Soc. 2018, 140, 12695-12699). Because 1-ScIII and 1-AlIII show 1H NMR spectra essentially identical to that of [MnIII(OH2)(dpaq)]2+, the primary effect of these Lewis acids on 1 is protonation of the hydroxo ligand caused by an increase in the Brønsted acidity of the solution.

Hole-induced electronic and optical transitions in La1−xSrxFeO3 epitaxial thin films

We have investigated the electronic and optical properties of epitaxial La1-xSrxFeO3 for x from 0 to 1 prepared by molecular beam epitaxy. Core-level and valence-band x-ray photoemission features monotonically shift to lower binding energy with increasing x, indicating downward movement of the Fermi level toward to the valence band maximum. Both Fe 2p and O 1s spectra broaden to higher binding energy with increasing x, consistent with delocalization of Sr-induced holes in the Fe 3d/O 2p hybridized valence band. Combining X-ray valence band photoemission and O K-edge x-ray absorption data, we map the evolution of the occupied and unoccupied bands and observe a narrowing of the gap, along with a transfer of state density from just below to just above the Fermi level, resulting from hole doping. In-plane transport measurements confirm that the material becomes a p-type semiconductor at lower doping levels and exhibits a insulator-to-metal transition at x equal to 1. Sub-gap optical transitions revealed by spectroscopic ellipsometry are explained based on insight from theoretical densities of states and first-principles calculations of optical absorption spectra.

X-ray Absorption and Emission Spectroscopic Studies of [L2Fe2S2](n) Model Complexes: Implications for the Experimental Evaluation of Redox States in Iron-Sulfur Clusters.

Herein, a systematic study of [L2Fe2S2]n model complexes (where L = bis(benzimidazolato) and n = 2-, 3-, 4-) has been carried out using iron and sulfur K-edge X-ray absorption (XAS) and iron Kβ and valence-to-core X-ray emission spectroscopies (XES). These data are used as a test set to evaluate the relative strengths and weaknesses of X-ray core level spectroscopies in assessing redox changes in iron–sulfur clusters. The results are correlated to density functional theory (DFT) calculations of the spectra in order to further support the quantitative information that can be extracted from the experimental data. It is demonstrated that due to canceling effects of covalency and spin state, the information that can be extracted from Fe Kβ XES mainlines is limited. However, a careful analysis of the Fe K-edge XAS data shows that localized valence vs delocalized valence species may be differentiated on the basis of the pre-edge and K-edge energies. These findings are then applied to existing literature Fe K-edge XAS data on the iron protein, P-cluster, and FeMoco sites of nitrogenase. The ability to assess the extent of delocalization in the iron protein vs the P-cluster is highlighted. In addition, possible charge states for FeMoco on the basis of Fe K-edge XAS data are discussed. This study provides an important reference for future X-ray spectroscopic studies of iron–sulfur clusters.

Study of Mg<sub>X</sub>Zn<sub>1-X</sub>O Alloys (0<x<0.15) by X-Ray Absorption Spectroscopy

High-resolution K-edge x-ray absorption data are presented for Mg, Zn and O of Mg1-xZnxO films. A detailed analysis of the extended x-ray absorption fine structure by using the IFEFFIT program is given, and the Zn form chemical bonds with O are obtained. The x-ray absorption near-edge structure of Mg, Zn and O K-edge are investigated, and the electronic structures of Mg1-xZnxO with various compositions are studied.

Role of the Tyr-Cys Cross-link to the Active Site Properties of Galactose Oxidase

The catalytically relevant, oxidized state of the active site [Cu(II)-Y·-C] of galactose oxidase (GO) is composed of antiferromagnetically coupled Cu(II) and a post-translationally generated Tyr-Cys radical cofactor [Y·-C]. The thioether bond of the Tyr-Cys cross-link has been shown experimentally to affect the stability, the reduction potential, and the catalytic efficiency of the GO active site. However, the origin of these structural and energetic effects on the GO active site has not yet been investigated in detail. Here we present copper and sulfur K-edge X-ray absorption data and a systematic computational approach for evaluating the role of the Tyr-Cys cross-link in GO. The sulfur contribution of the Tyr-Cys cross-link to the redox active orbital is estimated from sulfur K-edge X-ray absorption spectra of oxidized GO to be about 24 ± 3%, compared to the values from computational models of apo-GO (15%) and holo-GO (22%). The results for the apo-GO computational models are in good agreement with the previously reported value for apo-GO (20 ± 3% from EPR). Surprisingly, the Tyr-Cys cross-link has only a minimal effect on the inner sphere, coordination geometry of the Cu site in the holo-protein. Its effect on the electronic structure is more striking as it facilitates the delocalization of the redox active orbital onto the thioether sulfur derived from Cys, thereby reducing the spin coupling between the [Y·-C] radical and the Cu(II) center (752 cm(-1)) relative to the unsubstituted [Y·] radical and the Cu(II) center (2210 cm(-1)). Energetically, the Tyr-Cys cross-link lowers the reduction potential by about 75 mV (calculated) allowing a more facile oxidation of the holo active site versus the site without the cross-link. Overall, the Tyr-Cys cross-link confers unique ground state properties on the GO active site that tunes its function in a remarkably nuanced fashion.

Sulfur K-edge X-ray absorption spectroscopy as a probe of ligand-metal bond covalency: metal vs ligand oxidation in copper and nickel dithiolene complexes.

A combination of Cu L-edge and S K-edge X-ray absorption data and density functional theory (DFT) calculations has been correlated with 33S electron paramagnetic resonance superhyperfine results to obtain the dipole integral (Is) for the S 1s-->3p transition for the dithiolene ligand maleonitriledithiolate (MNT) in (TBA)2[Cu(MNT)2] (TBA= tetra-n-butylammonium). The results have been combined with the Is of sulfide derived from XPS studies to experimentally obtain a relation between the S 1s-->4p transition energy (which reflects the charge on the S atom, QSmol) and the dipole integral over a large range of QSmol. The results show that, for high charges on S, Is can vary from the previously reported Is values, calculated using data over a limited range of QSmol. A combination of S K-edge and Cu K- and L-edge X-ray absorption data and DFT calculations has been used to investigate the one-electron oxidation of [Cu(MNT)2]2- and [Ni(MNT)2]2-. The conversion of [Cu(MNT)2]2- to [Cu(MNT)2]- results in a large change in the charge on the Cu atom in the molecule (QCumol) and is consistent with a metal-based oxidation. This is accompanied by extensive charge donation from the ligands to compensate the high charge on the Cu in [Cu(MNT)2]- based on the increased S K-edge and decreased Cu L-edge intensity, respectively. In contrast, the oxidation of [Ni(MNT)2]2- to [Ni(MNT)2]- results in a small change in QNimol, indicating a ligand-based oxidation consistent with oxidation of a molecular orbital, psiSOMO (singly occupied molecular orbital), with predominant ligand character.

Synthesis, Characterization, and Biomimetic Chemistry of cis-Oxosulfidomolybdenum(VI) Complexes Stabilized by an Intramolecular Mo(O)S···S Interaction

The reactions of jade-green Tp*MoIVO(S2PR2) [Tp* = hydrotris(3,5-dimethylpyrazol-1-yl)borate; R = Et, Pri, Ph] with propylene sulfide produce ochre-red Tp*MoVIOS{SP(S)R2}. The complexes have been characterized by microanalysis, mass spectrometry, cyclic voltammetry, spectroscopy (IR, NMR, UV-vis, and X-ray absorption), and X-ray crystallography. The distorted-octahedral isopropyl and phenyl derivatives feature a tridentate fac-Tp* ligand, a terminal oxo ligand, and a unique five-membered Mo(=S){SP(=S)R2 ring moiety formed by a weak, intramolecular, bonding interaction between the Mo=S1 and (uncoordinated) S3=P moieties. The Mo=S1 [2.227(2) A (R = Pri) and 2.200(2) A (R = Ph)] and S1...S3 distances [2.396(3) A (R = Pri) and 2.383(2) A (R = Ph)] are indicative of a pi-bonded Mo=S1 unit and a weak (bond order ca. 1/3) S1...S3 interaction; the solid-state structures are maintained in solution according to S K-edge X-ray absorption data. The complexes react with excess cyanide to form thiocyanate and Tp*MoO(S2PR2), under anaerobic conditions, or Tp*MoO2(S2PR2), under aerobic conditions; the latter models the production of thiocyanate and desulfo molybdenum hydroxylases upon cyanolysis of molybdenum hydroxylases. The complexes react with triphenylphosphine to give Tp*MoO(S2PR2) and SPPh3, with cobaltocene or hydrosulfide ion to produce [Tp*MoVOS(S2PR2)]-, and with ferrocenium salts to yield [Tp*MoVO(S3PR2)]+; in the last two reactions, Mo(V) is produced by direct or induced internal redox reactions, respectively. The presence of the Mo(O)=S...S interaction does not radically lengthen the Mo=S bond in the complexes or preclude them from reactions typical of unperturbed oxosulfidomolybdenum(VI) complexes.

An Hermite expansion method for EXAFS data treatment and its application to Fe K-edge spectra

A new Hermite expansion method has been developed for EXAFS data treatment. This transformation technique involves an expansion into a series of odd Hermite functions, which are eigenfunctions of the sine Fourier transform. In this communication, we report mainly the use of the method to filter iron K-edge X-ray absorption data. Unlike the other numerical Fourier techniques, the new method takes into consideration additional physical information on the experimental data, i.e. both the length of the interval of the measurements and an estimation of the length of the interval of significant structure changes in real space are parameters of the method. The method was validated with iron K-edge fluorescence spectra of magnetite and applied to iron exchanged ZSM-5 zeolite with low iron loadings (0.75 wt.%). We are able to show that, compared to the same data unfiltered or spectra Fourier filtered with a large Gaussian window, the noise level is strongly reduced and artefacts at higher distances disappear. The validity of the method was proved by applying it to magnetite (Fe3O4), where it is possible to fit the two Fe–O distances (octahedral and tetrahedral sites) known from X-ray diffraction. With the new method, these shells are statistically significant and are observed as individual contributions in the Fourier transforms. We also show that the new method, unlike conventional Fourier techniques, retains the statistical independence of the data.

X-ray absorption studies of the purple acid phosphatase from red kidney beans (native enzyme, metal exchanged form)

Purple acid phosphatase from red kidney beans (KBP) catalyzes the hydrolysis of activated phosphoric acid monoesters and contains a heterodinuclear Fe(III)Zn(II) core in its active site. Iron K-edge X-ray absorption data have been obtained for the native enzyme and for a metal exchanged derivative, where Zn(II) was substituted by Fe(III). The environment of the native enzyme consists of 2.5 O/N at 1.91 Å, 3 O/N at 2.09 Å, and 1 Zn at 4.05 Å. For the metal exchanged form we obtained 2.5 O/N at 1.94 Å, 2.5 O/N at 2.09 Å, and 1 Fe at 3.79 Å.

EXAFS studies of uteroferrin and its anion complexes

Iron K-edge X-ray absorption data on the purple acid phosphatase from porcine uterus (uteroferrin, Uf) have been obtained for the native reduced enzyme and for the oxidized enzyme in its phosphate- and arsenate-bound forms. In all three complexes, the first sphere consists of 1.5 N/O at ∼1.94 A, 4 N/O at ∼2.1 A, and 0.5-1 N/O at ∼2.4 A; in no complex is found an Fe-O bond of ∼1.8 A which would derive from a μ-oxo bond. The ∼1.94-A shell corresponds to Fe-OAr and Fe-μ-OH(or R) bonds. The ∼2.1-A shell arises from histidine, carboxylate, oxoanion, and solvent ligation. The scatterer at ∼2.4 A is associated with a chelated carboxylate residue

Axial Oxygen-Centered Lattice Instabilities and High-Temperature Superconductivity

Copper K-edge x-ray absorption data indicate that an axial oxygen-centered lattice instability accompanying the 93 K superconducting transition in YBa(2)Cu(3)O(7) is of a pseudo-(anti)ferroelectric type, in that it appears to involve the softening of a double potential well into a structure in which the difference between the two copper-oxygen distances and the barrier height have both decreased. This softer structure is present only at temperatures within a fluctuation region around the transition. A similar process involving the analogous axial oxygen atom also accompanies the superconducting transition in T1Ba(2)Ca(3)Cu(4)O(11), where the superconducting transition temperature T(c) is ~120 K. The mean square relative displacement of this oxygen atom in YBa(2)Cu(3)O(7) is also specifically affected by a reduction in the oxygen content and by the substitution of cobalt for copper, providing further evidence for the sensitivity of the displacement to additional factors that also influence the superconductivity. On the basis of the implied coupling of this ionic motion to the superconductivity, a scenario for high-temperature superconductivity is presented in which both phonon and electronic (charge transfer) channels are synergistically involved.

Iron K-edge X-ray absorption spectroscopy of the iron-molybdenum cofactor of nitrogenase from Klebsiella pneumoniae.

Iron K-edge X-ray absorption data for the iron-molybdenum cofactor ('FeMoco') from Klebsiella pneumoniae reported here provide the first evidence for long-range structural order in the cofactor [Fe...Fe(Mo) = 0.368 nm in addition to Fe...S = 0.22 nm and Fe...Fe(Mo) = 0.27 nm] and, in contrast with previously published data [Antonio, Teo, Orme-Johnson, Nelson, Groh, Lindahl, Kauzlarich & Averill (1982) J. Am. Chem. Soc. 104, 4703-4705], indicate that most of the iron centres are not co-ordinated to light (oxygen, nitrogen) atoms. This demonstrates that presently available chemical models for FeMoco are inadequate.