This research article provides a comprehensive analysis of migration processes within Kazakhstan, focusing on the challenges in internal migration. The current trends in internal migration are leading to substantial differences in the distribution of the workforce, negatively affecting both the economy of the country and regional inequalities. The authors present an economic and mathematical model that demonstrates a connection between a decrease in the appeal of migration to certain locations and a fall in the gross regional product. Furthermore, a thorough examination of the legal framework, program execution, and policy documents reveals problems in the effective use of regulatory mechanisms, particularly in relation to rural migration issues. The study presents a systematic approach and an organizational regulatory scheme to improve the scientific methodology. This scheme takes into account numerous aspects and conditions that affect internal population migration dynamics. Received: 11 July 2024 / Accepted: 31 October 2024 / Published: 05 November 2024