The isotopic composition of lithium (Li) in clinopyroxene (Cpx), determined via in situ micro‐analysis, has been employed as a potential geochemical tool for studying various geological processes such as crust‐mantle recycling, silicate weathering and fluid‐rock interaction. To obtain precise and accurate Li isotopic compositions in Cpx by LA‐MC‐ICP‐MS, synthetic Cpx matrix‐matched reference materials (RMs) were prepared in this study. Six Cpx‐matrix RMs were prepared by mixing metallic oxides with GSP‐2 (granodiorite) or pure L‐SVEC solution and melting them into glasses (GSP‐2 + oxide; L‐SVEC + oxide). Two representative synthetic glasses, CPXA01 and CPXB01, were subjected to a series of analyses to investigate the possible qualification of the RMs for in situ Li isotope measurement by LA‐MC‐ICP‐MS, including elemental homogeneity analysis (elemental mapping analysis and spot analysis), Li isotopic homogeneity analysis and accurate Li isotopic determination. The applicability of the synthetic Cpx‐matrix RMs was highlighted by comparing the δ7Li values of three natural Cpx calibrated against the synthetic Cpx‐matrix RMs and other commonly used RMs with different matrices (NIST SRM 612, BCR‐2G, GOR128‐G, StHs6/80‐G, KL2‐G and T1‐G), respectively. Additionally, CPXB01‐05 RMs with the same matrix but different Li contents were prepared to explore the Li content mismatch effect, which is significant for accurate determination of in situ Li isotopic composition by LA‐MC‐ICP‐MS. The results of the cross‐calibration of Li isotopes in CPXA01 and CPXB01 suggested no obvious Li isotopic fractionation between the two types of glasses (GSP‐2 + oxide; L‐SVEC + oxide). Thus, the two methods of producing Cpx‐matrix RMs are suitable for preparing the matrix‐matched RMs for in situ microanalysis for Li isotopes.